4CDKA

Structure of znrf3-rspo1
Total Genus 40
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
152
structure length
152
Chain Sequence
ETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (129-131)EMPTYS2 (74-86)TIV1 (69-72)TIV2 (87-90)S3 (94-100)TI2 (102-105)TII1 (107-110)TI3 (103-106)TI4 (104-107)TIV3 (108-111)TIV4 (109-112)TI5 (110-113)AH1 (139-149)TIV5 (132-135)TI1 (86-89)TVIII1 (135-138)S4 (120-125)S1 (58-68)Updating...
connected with : NaN
molecule tags Ligase
source organism Mus musculus
publication title Structures of Wnt-Antagonist Znrf3 and its Complex with R-Spondin 1 and Implications for Signaling.
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
total genus 40
structure length 152
sequence length 152
chains with identical sequence B, C, D
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4cdkA00
4X3RA 4NGQA 4C9UA 4C8PA 4LQGA 3BI1A 3BXMA 4C8CA 3VTAA 2C6GA 2EK8A 4P4DA 1Z8LA 4P44A 4C8TA 1Y9ZA 3SJGA 4C9RA 3SJXA 4MCSA 5IB9A 4C8FA 3BI0A 4OC2A 4MCPA 2XEFA 2JBJA 4C86A 3EIFA 3S9LA 4TWEA 3BHXA 4C9AA 3S9MA 2C6CA 4OC5A 1WVMA 3D7DA 5F09A 4NGNA 3D7FA 4P4BA 3D7GA 2PVVA 4NGPA 4C8AA 2EK9A 2JBKA 3IIBA 3I74A 2OR4A 4OC3A 4MCQA 4OC0A 4TJVA 3FEEA 2C6PA 4NGTA 3FECA 3RBUA 3ICUA 1V6CA 2OOTA 2PVWA 3SJFA 2XEGA 1DE4C 4YN3A 4CDKA 4P4JA 3SJEA 2CIJA 4C85A 4NGMA 2XEJA 4JYWA 3FF3A 4C8UA 3KASA 4JZ0A 3S9NA 4NGSA 4W9YA 3D7HA 3IWWA 5D29A 3FEDA 3I6SA 4C99A 4TJXA 4C9VA 4P4IA 4NGRA 4P4FA 4OC1A 4KNGE 4CDJA 4P4EA 4MCRA 1CX8A 4OC4A 4C9EA 4P45A 4C84A 2XEIA 1XF1A 4OMEA 5ELYA
chains in the Genus database with same CATH superfamily
4X3RA 4NGQA 4C9UA 4COGA 1NBWA 4C8PA 4LQGA 3BI1A 1VI4A 2EZAA 2YJVA 3BXMA 4C8CA 5JYBA 3T5MA 1KBLA 1JDBC 3VTAA 2C6GA 2EK8A 2HWGA 4P4DA 4COBA 1Z8LA 1A9XB 3GJZA 4J0NA 4P44A 4EYSA 4C8TA 1Y9ZA 3SJGA 2AUNA 3EZEA 3SJXA 4MCSA 4C9RA 4C8FA 5IB9A 3BI0A 4OC2A 5K99A 1Q5XA 4MCPA 2EZCA 4CO9A 2XEFA 1BXRB 2JBJA 2EZBA 5F9MA 2R82A 3EZAA 5FD8A 4C86A 3EIFA 3S9LA 4TWEA 3U1BA 3BHXA 4C9AA 3S9MA 1NXJA 2C6CA 4OC5A 1KEEB 1JDEA 4IIYA 4INJA 1GGOA 2D0PA 1WVMA 1KC7A 3D7DA 2YJTA 3TLCA 1ZRSA 5F1YA 3T0TA 5F09A 4NGNA 3D7FA 4P4BA 3D7GA 3TLAA 1M6VB 1J3LA 2PVVA 4MI1A 4NGPA 2EK9A 2JBKA 4C8AA 3IIBA 2MP0A 3NOJA 3I74A 3EZBA 2HI6A 2OR4A 4OC3A 3C8OA 4MCQA 4OC0A 2FM4A 2DIKA 4TJVA 1CS0B 2AUMA 2HROA 3FEEA 2C6PA 1DIKA 4NGTA 1VBGA 3FECA 3RBUA 4IIXA 3ICUA 2GP4A 1V6CA 4JVOA 2OOTA 2PVWA 3SJFA 4E94A 2XEGA 3TLYA 1DE4C 4YN3A 1CE8B 4CDKA 1T36B 3TLBA 4P4JA 3SJEA 2CIJA 4C85A 4NGMA 2OLSA 2XEJA 4JYWA 3FF3A 4C8UA 3KASA 1ZYMA 1EZAA 5JVLA 4JZ0A 4CZ1A 3S9NA 3T07A 4NGSA 4W9YA 1ZL0A 4M8DA 3D7HA 3IWWA 5D29A 2X0SA 3K4IA 3TLGB 3FEDA 3I6SA 4C99A 2D0OA 4MJXA 4TJXA 3SR3A 4C9VA 5IR2A 4E5SA 4P4IA 2C5QA 4NGRA 4P4FA 4OC1A 2PCNA 3KRVA 1C30B 4KNGE 3TLGA 4CDJA 4H1HA 3G23A 4P4EA 1VBHA 5F5XA 4MCRA 1CX8A 4OC4A 2B0AA 4C9EA 1C3OB 3TLEA 3T05A 3TLZA 2E28A 4P45A 1EZBA 4C84A 2XEIA 3K9TA 3TYXA 1XF1A 4OMEA 1R61A 5ELYA
chains in the Genus database with same CATH topology
4X3RA 4NGQA 4C9UA 4C8PA 4LQGA 3BI1A 3BXMA 4C8CA 3VTAA 2C6GA 2EK8A 4P4DA 1Z8LA 4P44A 4C8TA 1Y9ZA 3SJGA 4C9RA 3SJXA 4MCSA 5IB9A 4C8FA 3BI0A 4OC2A 4MCPA 2XEFA 2JBJA 4C86A 3EIFA 3S9LA 4TWEA 3BHXA 4C9AA 3S9MA 2C6CA 4OC5A 1WVMA 3D7DA 5F09A 4NGNA 3D7FA 4P4BA 3D7GA 2PVVA 4NGPA 4C8AA 2EK9A 2JBKA 3IIBA 3I74A 2OR4A 4OC3A 4MCQA 4OC0A 4TJVA 3FEEA 2C6PA 4NGTA 3FECA 3RBUA 3ICUA 2GP4A 1V6CA 2OOTA 2PVWA 3SJFA 2XEGA 1DE4C 4YN3A 4CDKA 4P4JA 3SJEA 2CIJA 4C85A 4NGMA 2XEJA 4JYWA 3FF3A 4C8UA 3KASA 4JZ0A 3S9NA 4NGSA 4W9YA 3D7HA 3IWWA 5D29A 3FEDA 3I6SA 4C99A 4TJXA 4C9VA 5IR2A 4P4IA 2C5QA 4NGRA 4P4FA 4OC1A 4KNGE 4CDJA 4P4EA 4MCRA 1CX8A 4OC4A 4C9EA 4P45A 4C84A 2XEIA 3K9TA 1XF1A 4OMEA 5ELYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X3R A;  4NGQ A;  4C9U A;  4C8P A;  4LQG A;  3BI1 A;  3BXM A;  4C8C A;  3VTA A;  2C6G A;  2EK8 A;  4P4D A;  1Z8L A;  4P44 A;  4C8T A;  1Y9Z A;  3SJG A;  4C9R A;  3SJX A;  4MCS A;  5IB9 A;  4C8F A;  3BI0 A;  4OC2 A;  4MCP A;  2XEF A;  2JBJ A;  4C86 A;  3EIF A;  3S9L A;  4TWE A;  3BHX A;  4C9A A;  3S9M A;  2C6C A;  4OC5 A;  1WVM A;  3D7D A;  5F09 A;  4NGN A;  3D7F A;  4P4B A;  3D7G A;  2PVV A;  4NGP A;  4C8A A;  2EK9 A;  2JBK A;  3IIB A;  3I74 A;  2OR4 A;  4OC3 A;  4MCQ A;  4OC0 A;  4TJV A;  3FEE A;  2C6P A;  4NGT A;  3FEC A;  3RBU A;  3ICU A;  1V6C A;  2OOT A;  2PVW A;  3SJF A;  2XEG A;  1DE4 C;  4YN3 A;  4CDK A;  4P4J A;  3SJE A;  2CIJ A;  4C85 A;  4NGM A;  2XEJ A;  4JYW A;  3FF3 A;  4C8U A;  3KAS A;  4JZ0 A;  3S9N A;  4NGS A;  4W9Y A;  3D7H A;  3IWW A;  5D29 A;  3FED A;  3I6S A;  4C99 A;  4TJX A;  4C9V A;  4P4I A;  4NGR A;  4P4F A;  4OC1 A;  4KNG E;  4CDJ A;  4P4E A;  4MCR A;  1CX8 A;  4OC4 A;  4C9E A;  4P45 A;  4C84 A;  2XEI A;  1XF1 A;  4OME A;  5ELY A; 
#chains in the Genus database with same CATH topology
 4X3R A;  4NGQ A;  4C9U A;  4COG A;  1NBW A;  4C8P A;  4LQG A;  3BI1 A;  1VI4 A;  2EZA A;  2YJV A;  3BXM A;  4C8C A;  5JYB A;  3T5M A;  1KBL A;  1JDB C;  3VTA A;  2C6G A;  2EK8 A;  2HWG A;  4P4D A;  4COB A;  1Z8L A;  1A9X B;  3GJZ A;  4J0N A;  4P44 A;  4EYS A;  4C8T A;  1Y9Z A;  3SJG A;  2AUN A;  3EZE A;  3SJX A;  4MCS A;  4C9R A;  4C8F A;  5IB9 A;  3BI0 A;  4OC2 A;  5K99 A;  1Q5X A;  4MCP A;  2EZC A;  4CO9 A;  2XEF A;  1BXR B;  2JBJ A;  2EZB A;  5F9M A;  2R82 A;  3EZA A;  5FD8 A;  4C86 A;  3EIF A;  3S9L A;  4TWE A;  3U1B A;  3BHX A;  4C9A A;  3S9M A;  1NXJ A;  2C6C A;  4OC5 A;  1KEE B;  1JDE A;  4IIY A;  4INJ A;  1GGO A;  2D0P A;  1WVM A;  1KC7 A;  3D7D A;  2YJT A;  3TLC A;  1ZRS A;  5F1Y A;  3T0T A;  5F09 A;  4NGN A;  3D7F A;  4P4B A;  3D7G A;  3TLA A;  1M6V B;  1J3L A;  2PVV A;  4MI1 A;  4NGP A;  2EK9 A;  2JBK A;  4C8A A;  3IIB A;  2MP0 A;  3NOJ A;  3I74 A;  3EZB A;  2HI6 A;  2OR4 A;  4OC3 A;  3C8O A;  4MCQ A;  4OC0 A;  2FM4 A;  2DIK A;  4TJV A;  1CS0 B;  2AUM A;  2HRO A;  3FEE A;  2C6P A;  1DIK A;  4NGT A;  1VBG A;  3FEC A;  3RBU A;  4IIX A;  3ICU A;  2GP4 A;  1V6C A;  4JVO A;  2OOT A;  2PVW A;  3SJF A;  4E94 A;  2XEG A;  3TLY A;  1DE4 C;  4YN3 A;  1CE8 B;  4CDK A;  1T36 B;  3TLB A;  4P4J A;  3SJE A;  2CIJ A;  4C85 A;  4NGM A;  2OLS A;  2XEJ A;  4JYW A;  3FF3 A;  4C8U A;  3KAS A;  1ZYM A;  1EZA A;  5JVL A;  4JZ0 A;  4CZ1 A;  3S9N A;  3T07 A;  4NGS A;  4W9Y A;  1ZL0 A;  4M8D A;  3D7H A;  3IWW A;  5D29 A;  2X0S A;  3K4I A;  3TLG B;  3FED A;  3I6S A;  4C99 A;  2D0O A;  4MJX A;  4TJX A;  3SR3 A;  4C9V A;  5IR2 A;  4E5S A;  4P4I A;  2C5Q A;  4NGR A;  4P4F A;  4OC1 A;  2PCN A;  3KRV A;  1C30 B;  4KNG E;  3TLG A;  4CDJ A;  4H1H A;  3G23 A;  4P4E A;  1VBH A;  5F5X A;  4MCR A;  1CX8 A;  4OC4 A;  2B0A A;  4C9E A;  1C3O B;  3TLE A;  3T05 A;  3TLZ A;  2E28 A;  4P45 A;  1EZB A;  4C84 A;  2XEI A;  3K9T A;  3TYX A;  1XF1 A;  4OME A;  1R61 A;  5ELY A; 
#chains in the Genus database with same CATH homology
 4X3R A;  4NGQ A;  4C9U A;  4C8P A;  4LQG A;  3BI1 A;  3BXM A;  4C8C A;  3VTA A;  2C6G A;  2EK8 A;  4P4D A;  1Z8L A;  4P44 A;  4C8T A;  1Y9Z A;  3SJG A;  4C9R A;  3SJX A;  4MCS A;  5IB9 A;  4C8F A;  3BI0 A;  4OC2 A;  4MCP A;  2XEF A;  2JBJ A;  4C86 A;  3EIF A;  3S9L A;  4TWE A;  3BHX A;  4C9A A;  3S9M A;  2C6C A;  4OC5 A;  1WVM A;  3D7D A;  5F09 A;  4NGN A;  3D7F A;  4P4B A;  3D7G A;  2PVV A;  4NGP A;  4C8A A;  2EK9 A;  2JBK A;  3IIB A;  3I74 A;  2OR4 A;  4OC3 A;  4MCQ A;  4OC0 A;  4TJV A;  3FEE A;  2C6P A;  4NGT A;  3FEC A;  3RBU A;  3ICU A;  2GP4 A;  1V6C A;  2OOT A;  2PVW A;  3SJF A;  2XEG A;  1DE4 C;  4YN3 A;  4CDK A;  4P4J A;  3SJE A;  2CIJ A;  4C85 A;  4NGM A;  2XEJ A;  4JYW A;  3FF3 A;  4C8U A;  3KAS A;  4JZ0 A;  3S9N A;  4NGS A;  4W9Y A;  3D7H A;  3IWW A;  5D29 A;  3FED A;  3I6S A;  4C99 A;  4TJX A;  4C9V A;  5IR2 A;  4P4I A;  2C5Q A;  4NGR A;  4P4F A;  4OC1 A;  4KNG E;  4CDJ A;  4P4E A;  4MCR A;  1CX8 A;  4OC4 A;  4C9E A;  4P45 A;  4C84 A;  2XEI A;  3K9T A;  1XF1 A;  4OME A;  5ELY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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