4COG | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	207
structure length	207
Chain Sequence	TLWDISPPVSPATPVWPGDTPVAVERVWRMEAGSPVNVARLTLSPHTGAHCDAPLHYDADGAPIGAVPLDTYLGPCRVIHCIGAAPVVRPADVEAALDGVPPRVLLRTYARAAVEQWDSNFCAVAPDTVDLLAAHGVKLIGIDTPSLDPQESKTMDAHRRVRAHRMAILEGIVLDDVPPGDYELIALPLKFATLDASPVRAVLRALP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 207 atoms

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207 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Burkholderia cenocepacia
publication title	Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile. pubmed doi rcsb
molecule keywords	KYNURENINE FORMAMIDASE
total genus	54
structure length	207
sequence length	207
chains with identical sequence	B, C, D
ec nomenclature	ec 3.5.1.9: Arylformamidase.
pdb deposition date	2014-01-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04199	Cyclase	Putative cyclase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.30.50	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase; domain 1	Putative cyclase	4cogA00

1R61A 4CZ1A 4CO9A 4COBA 4J0NA 4COGA 2B0AA 4M8DA 3KRVA
chains in the Genus database with same CATH superfamily

4C8AA 2R82A 4MCRA 1ZYMA 1C30B 3BI0A 3D7HA 4JVOA 5D29A 3SJGA 5ELYA 4CDKA 4W9YA 3S9MA 4EYSA 3EIFA 3KRVA 3T05A 1EZAA 2E28A 2PVWA 3D7GA 4TWEA 4OC3A 4P4BA 3I6SA 4P4IA 1ZL0A 5F9MA 4MI1A 1KEEB 2PCNA 4X3RA 3S9NA 1BXRB 2YJTA 2EK9A 2PVVA 4IIXA 3SJFA 1C3OB 3TLYA 5F5XA 2X0SA 3TLZA 4C8FA 4C9EA 2EZCA 1NXJA 1DIKA 2C5QA 4H1HA 4CDJA 4P4FA 4C85A 1CX8A 1WVMA 3S9LA 1A9XB 1R61A 3FF3A 3D7FA 2GP4A 4CO9A 1KC7A 4NGTA 2C6GA 4COBA 2C6CA 4INJA 1CS0B 4C99A 1Z8LA 5JYBA 4NGRA 3EZBA 2HI6A 3IIBA 1GGOA 2XEFA 4M8DA 4E94A 3KASA 3K9TA 3VTAA 4OC0A 2EZAA 2AUNA 4E5SA 3C8OA 3T0TA 3FEEA 2DIKA 3TLCA 1JDBC 1Q5XA 4OC1A 3GJZA 5F1YA 3TYXA 2OOTA 4C8PA 1JDEA 3RBUA 4TJXA 3BXMA 4P44A 1M6VB 3T5MA 2OR4A 1VBHA 2XEGA 4C8UA 3TLGB 4NGMA 1EZBA 4C84A 4NGSA 5F09A 3EZEA 4NGPA 3TLGA 3IWWA 5FD8A 2EZBA 4IIYA 2D0OA 3BHXA 4TJVA 5JVLA 4NGNA 2JBJA 1NBWA 2MP0A 4J0NA 4COGA 3U1BA 2FM4A 1XF1A 4LQGA 4P4DA 4KNGE 4OC4A 1CE8B 4C8TA 1ZRSA 4JYWA 3ICUA 4P4JA 2HWGA 2OLSA 2XEIA 2B0AA 4CZ1A 4JZ0A 3EZAA 3TLBA 2CIJA 4MCSA 4NGQA 1Y9ZA 3BI1A 3I74A 4C9RA 1DE4C 4P45A 3SR3A 5IB9A 4MCPA 2C6PA 2D0PA 4OC2A 4P4EA 4C8CA 4OC5A 4OMEA 3FEDA 1VI4A 3SJEA 3G23A 3FECA 3SJXA 3D7DA 4C9AA 4YN3A 4C86A 5K99A 3T07A 2AUMA 2JBKA 1VBGA 3NOJA 1J3LA 4C9UA 2YJVA 2HROA 1T36B 1KBLA 2XEJA 3K4IA 4C9VA 1V6CA 4MCQA 3TLEA 2EK8A 5IR2A 3TLAA 4MJXA
chains in the Genus database with same CATH topology

1R61A 4CZ1A 4CO9A 4COBA 4J0NA 4COGA 2B0AA 4M8DA 3KRVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1R61 A;  4CZ1 A;  4CO9 A;  4COB A;  4J0N A;  4COG A;  2B0A A;  4M8D A;  3KRV A; 
#chains in the Genus database with same CATH topology
 4C8A A;  2R82 A;  4MCR A;  1ZYM A;  1C30 B;  3BI0 A;  3D7H A;  4JVO A;  5D29 A;  3SJG A;  5ELY A;  4CDK A;  4W9Y A;  3S9M A;  4EYS A;  3EIF A;  3KRV A;  3T05 A;  1EZA A;  2E28 A;  2PVW A;  3D7G A;  4TWE A;  4OC3 A;  4P4B A;  3I6S A;  4P4I A;  1ZL0 A;  5F9M A;  4MI1 A;  1KEE B;  2PCN A;  4X3R A;  3S9N A;  1BXR B;  2YJT A;  2EK9 A;  2PVV A;  4IIX A;  3SJF A;  1C3O B;  3TLY A;  5F5X A;  2X0S A;  3TLZ A;  4C8F A;  4C9E A;  2EZC A;  1NXJ A;  1DIK A;  2C5Q A;  4H1H A;  4CDJ A;  4P4F A;  4C85 A;  1CX8 A;  1WVM A;  3S9L A;  1A9X B;  1R61 A;  3FF3 A;  3D7F A;  2GP4 A;  4CO9 A;  1KC7 A;  4NGT A;  2C6G A;  4COB A;  2C6C A;  4INJ A;  1CS0 B;  4C99 A;  1Z8L A;  5JYB A;  4NGR A;  3EZB A;  2HI6 A;  3IIB A;  1GGO A;  2XEF A;  4M8D A;  4E94 A;  3KAS A;  3K9T A;  3VTA A;  4OC0 A;  2EZA A;  2AUN A;  4E5S A;  3C8O A;  3T0T A;  3FEE A;  2DIK A;  3TLC A;  1JDB C;  1Q5X A;  4OC1 A;  3GJZ A;  5F1Y A;  3TYX A;  2OOT A;  4C8P A;  1JDE A;  3RBU A;  4TJX A;  3BXM A;  4P44 A;  1M6V B;  3T5M A;  2OR4 A;  1VBH A;  2XEG A;  4C8U A;  3TLG B;  4NGM A;  1EZB A;  4C84 A;  4NGS A;  5F09 A;  3EZE A;  4NGP A;  3TLG A;  3IWW A;  5FD8 A;  2EZB A;  4IIY A;  2D0O A;  3BHX A;  4TJV A;  5JVL A;  4NGN A;  2JBJ A;  1NBW A;  2MP0 A;  4J0N A;  4COG A;  3U1B A;  2FM4 A;  1XF1 A;  4LQG A;  4P4D A;  4KNG E;  4OC4 A;  1CE8 B;  4C8T A;  1ZRS A;  4JYW A;  3ICU A;  4P4J A;  2HWG A;  2OLS A;  2XEI A;  2B0A A;  4CZ1 A;  4JZ0 A;  3EZA A;  3TLB A;  2CIJ A;  4MCS A;  4NGQ A;  1Y9Z A;  3BI1 A;  3I74 A;  4C9R A;  1DE4 C;  4P45 A;  3SR3 A;  5IB9 A;  4MCP A;  2C6P A;  2D0P A;  4OC2 A;  4P4E A;  4C8C A;  4OC5 A;  4OME A;  3FED A;  1VI4 A;  3SJE A;  3G23 A;  3FEC A;  3SJX A;  3D7D A;  4C9A A;  4YN3 A;  4C86 A;  5K99 A;  3T07 A;  2AUM A;  2JBK A;  1VBG A;  3NOJ A;  1J3L A;  4C9U A;  2YJV A;  2HRO A;  1T36 B;  1KBL A;  2XEJ A;  3K4I A;  4C9V A;  1V6C A;  4MCQ A;  3TLE A;  2EK8 A;  5IR2 A;  3TLA A;  4MJX A; 
#chains in the Genus database with same CATH homology
 1R61 A;  4CZ1 A;  4CO9 A;  4COB A;  4J0N A;  4COG A;  2B0A A;  4M8D A;  3KRV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4COGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations