The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
167
|
structure length |
164
|
Chain Sequence |
GGAVVTVAFTNARDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the N-terminal Domain of PEX1 AAA-ATPase: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
pubmed doi rcsb |
| molecule keywords |
Peroxisome biogenesis factor 1
|
| molecule tags |
Protein transport
|
| source organism |
Mus musculus
|
| total genus |
42
|
| structure length |
164
|
| sequence length |
167
|
| ec nomenclature | |
| pdb deposition date | 2004-06-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09262 | PEX-1N | Peroxisome biogenesis factor 1, N-terminal |
| A | PF09263 | PEX-2N | Peroxisome biogenesis factor 1, N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | Barwin-like endoglucanases | ||
| Alpha Beta | Roll | Vcp-like ATPase; Chain A, domain 2 | Vcp-like ATPase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 1SIW A; 1WLF A; 4KDI A; 5FTM A; 5DYI A; 2VUM A; 1UHE A; 3ML1 A; 1CZ4 A; 1YLE A; 3O5A A; 5C18 A; 3GTP A; 3HKZ A; 2JA7 A; 2JIR A; 3GTK A; 4AYB A; 2E2H A; 2JIP A; 4AAY A; 1PYU B; 2C45 A; 4D7Z B; 2V45 A; 4AOK B; 1G8J A; 2VPX A; 3DMR A; 2NVY A; 3QC8 A; 3TM7 B; 1TWA A; 2VPZ A; 1E32 A; 1E5V A; 2JA5 A; 1FDI A; 2E2I A; 1PPY A; 2NVX A; 3H0G A; 3IR6 A; 1IW7 D; 4KO8 A; 1FDO A; 1WCM A; 3OUG A; 1AW8 B; 2PJH B; 4KLN A; 1PQE A; 2JIQ A; 2R92 A; 1PQF A; 1AA6 A; 2JV2 A; 3IR7 A; 1PT0 A; 1TWF A; 2NAP A; 1H0H A; 1Y4Z A; 4KDL A; 3GTL A; 3QQ7 A; 1K83 A; 1ZC1 A; 3IR5 A; 4KOD A; 4CRZ A; 3GTM A; 4CRY G; 4CS0 A; 1Y5I A; 3HU2 A; 2Y0S A; 2DMR A; 1G8K A; 1QDN A; 1Q16 A; 1DMR A; 1PQH A; 1TWG A; 2JIM A; 4GA6 A; 1Y1V A; 1H5N A; 1EU1 A; 1R27 A; 2EEO B; 1I50 A; 2R7Z A; 3PLX B; 4AON B; 3GTQ A; 1PT1 A; 2NYA A; 1CZ5 A; 1OGY A; 4GA5 A; 2YUJ A; 4QIW A; 2KI8 A; 5T5M D; 1R9T A; 5FTJ A; 4DMR A; 1S3S A; 2WAQ A; 2YU9 A; 3CF2 A; 5B6C A; 3GTG A; 1E18 A; 1UHD A; 2VPY A; 5C1B A; 2JA6 A; 1R7R A; 4AZD A; 1QCS A; 3HU1 A; 1I3Q A; 2V3V A; 2E7Z A; 5FTK A; 2R93 A; 3FKI A; 5FTL A; 2WB1 A; 1E61 A; 1Y1W A; 2PMZ A; 3QQ8 A; 3CQZ A; 5DYG A; 2B63 A; 3TIW A; 1VC3 B; 1E60 A; 1DMS A; 3HU3 A; 5EPP A; 5T5I D; 2IV2 X; 4C2M A; 1SFO A; 5GLF A; 1TWC A; 3QWZ A; 1KQG A; 2JIO A; 2VPW A; 4RV0 A; 1CR5 A; 5FTN A; 1PYQ A; 1TMO A; 1TWH A; 3GTJ A; 1KQF A; 3GTO A; #chains in the Genus database with same CATH topology 5GM9 A; 1SIW A; 3SUJ A; 1WLF A; 4JP6 A; 4KDI A; 2PJJ A; 5FTM A; 4CQN A; 5DYI A; 2VUM A; 1UHE A; 3ML1 A; 1CZ4 A; 2Q1A X; 1YLE A; 3O5A A; 5EQJ B; 5C18 A; 3X2K A; 3GTP A; 2QQS A; 3HKZ A; 2JA7 A; 2JIR A; 3X2N A; 4JJO A; 4AYB A; 3GTK A; 2JIP A; 4AVR A; 2E2H A; 2BH0 A; 3X2O A; 4AAY A; 3BQB A; 3FPR A; 4ARC A; 1PYU B; 2C45 A; 2ENG A; 4D7Z B; 3X2I A; 2HCZ X; 2V45 A; 4AOK B; 3ZJU A; 1G8J A; 2VPX A; 3DMR A; 2NVY A; 3QC8 A; 2BE5 D; 3TM7 B; 1TWA A; 2A69 D; 2VPZ A; 2Q18 X; 1E32 A; 1E5V A; 2JA5 A; 1FDI A; 4L48 A; 2E2I A; 5GLY A; 4ARI A; 4UC4 A; 1PPY A; 2NVX A; 2Q19 X; 1L8F A; 3H0G A; 3IR6 A; 1N10 A; 1IW7 D; 4KO8 A; 1FDO A; 1WCM A; 5CCB A; 3OUG A; 3SUL A; 1AW8 B; 2XDP A; 2G6G A; 2PJH B; 4JP7 A; 4KLN A; 3D30 A; 1PQE A; 2JIQ A; 2R92 A; 1PQF A; 1AA6 A; 2JV2 A; 2KQA A; 3IR7 A; 1PT0 A; 5GLX A; 1OA9 A; 1TWF A; 2NAP A; 2Q1C X; 3FPT A; 1H0H A; 1Y4Z A; 2A6H D; 3ZJV A; 2G5D A; 4KDL A; 2CW0 D; 3GTL A; 3QQ7 A; 1K83 A; 1ZC1 A; 3IR5 A; 1HD5 A; 3FPU A; 4KOD A; 4CRZ A; 2GFA A; 1O54 A; 3SUM A; 3GTM A; 5D6Y A; 4CRY G; 4CS0 A; 3M3G A; 1Y5I A; 4JS7 A; 5D6W A; 1YNN D; 1BW3 A; 3HU2 A; 2O5J D; 2Y0S A; 4ENG A; 2DMR A; 1G8K A; 1QDN A; 1Q16 A; 3X2L A; 5ERG B; 3X2H A; 1DMR A; 1PQH A; 1TWG A; 2JIM A; 5H4U A; 2PNW A; 4GA6 A; 1Y1V A; 1H5N A; 1EU1 A; 2EEO B; 1R27 A; 3X2G A; 1I50 A; 2R7Z A; 1YNJ D; 3PLX B; 4AON B; 2QQR A; 3GTQ A; 2YVL A; 1PT1 A; 2NYA A; 1CZ5 A; 1OGY A; 2YUJ A; 2PIC A; 4GA5 A; 4QIW A; 3ZGZ A; 2KI8 A; 5T5M D; 4ZM7 A; 1R9T A; 2PWY A; 5FTJ A; 4DMR A; 1S3S A; 2WAQ A; 2YU9 A; 5CD1 A; 3ENG A; 3CF2 A; 5B6C A; 3CZB A; 3SUK A; 3GTG A; 1E18 A; 2Q1D X; 3MB5 A; 1UHD A; 2VPY A; 5C1B A; 2JA6 A; 2MM2 A; 1R7R A; 4AZD A; 1QCS A; 3HU1 A; 1I3Q A; 2V3V A; 2E7Z A; 5FTK A; 5CCX A; 1WC2 A; 2R93 A; 3FKI A; 5FTL A; 2WB1 A; 4FG2 A; 1E61 A; 4FER A; 1OA7 A; 2PMZ A; 3X2M A; 1Y1W A; 1BW4 A; 3ZJT A; 3QQ8 A; 2AE0 X; 2PI8 A; 3CQZ A; 4FFT A; 4JCW A; 2B25 A; 5DYG A; 2B63 A; 2A6E D; 4NOH A; 1VC3 B; 1E60 A; 1DMS A; 1ZYR D; 3TIW A; 3HU3 A; 5EPP A; 5T5I D; 1I9G A; 2KY9 A; 1SMY D; 2IV2 X; 4C2M A; 2GF7 A; 4FIB A; 1SFO A; 3X2J A; 5GLF A; 2LW6 A; 4AS1 A; 2A68 D; 4AQ7 A; 1TWC A; 3QWZ A; 3LGA A; 1KQG A; 3LHD A; 4FG4 A; 2JIO A; 2VPW A; 4RV0 A; 1CR5 A; 5FTN A; 1PYQ A; 1TMO A; 1TWH A; 3X2P A; 3GTJ A; 2MM0 A; 5D6X A; 1KQF A; 2GAE A; 3GTO A; #chains in the Genus database with same CATH homology 1SIW A; 1WLF A; 4KDI A; 2PJJ A; 5FTM A; 4CQN A; 5DYI A; 2VUM A; 1UHE A; 3ML1 A; 1CZ4 A; 2Q1A X; 1YLE A; 3O5A A; 5EQJ B; 5C18 A; 3GTP A; 2QQS A; 3HKZ A; 2JA7 A; 2JIR A; 3GTK A; 4AYB A; 2E2H A; 2JIP A; 4AAY A; 3FPR A; 4ARC A; 1PYU B; 2C45 A; 4D7Z B; 2V45 A; 4AOK B; 3ZJU A; 1G8J A; 2VPX A; 3DMR A; 2NVY A; 3QC8 A; 2BE5 D; 3TM7 B; 1TWA A; 2A69 D; 2VPZ A; 2Q18 X; 1E32 A; 1E5V A; 2JA5 A; 1FDI A; 2E2I A; 4ARI A; 4UC4 A; 1PPY A; 2NVX A; 2Q19 X; 3H0G A; 5CCB A; 3IR6 A; 1IW7 D; 4KO8 A; 1FDO A; 1WCM A; 3OUG A; 1AW8 B; 2XDP A; 2G6G A; 2PJH B; 4KLN A; 1PQE A; 2JIQ A; 2R92 A; 1PQF A; 1AA6 A; 2JV2 A; 3IR7 A; 1PT0 A; 1TWF A; 2NAP A; 2Q1C X; 3FPT A; 1H0H A; 1Y4Z A; 2A6H D; 3ZJV A; 2G5D A; 4KDL A; 2CW0 D; 3GTL A; 3QQ7 A; 1K83 A; 1ZC1 A; 3IR5 A; 3FPU A; 4KOD A; 4CRZ A; 2GFA A; 1O54 A; 5D6Y A; 3GTM A; 4CRY G; 4CS0 A; 1Y5I A; 5D6W A; 1YNN D; 3HU2 A; 2O5J D; 2Y0S A; 2DMR A; 1G8K A; 1QDN A; 1Q16 A; 5ERG B; 1DMR A; 1PQH A; 1TWG A; 2JIM A; 2PNW A; 4GA6 A; 1Y1V A; 1H5N A; 1EU1 A; 1R27 A; 2EEO B; 1I50 A; 2R7Z A; 2YVL A; 1YNJ D; 3PLX B; 4AON B; 2QQR A; 3GTQ A; 3BQB A; 1PT1 A; 2NYA A; 1CZ5 A; 1OGY A; 2YUJ A; 2PIC A; 4GA5 A; 4QIW A; 3ZGZ A; 2KI8 A; 5T5M D; 1R9T A; 2PWY A; 5FTJ A; 4DMR A; 1S3S A; 2WAQ A; 2YU9 A; 5CD1 A; 3CF2 A; 5B6C A; 3CZB A; 2Q1D X; 3GTG A; 1E18 A; 3MB5 A; 1UHD A; 2VPY A; 5C1B A; 2JA6 A; 2MM2 A; 1R7R A; 4AZD A; 1QCS A; 3HU1 A; 1I3Q A; 2V3V A; 2E7Z A; 5FTK A; 5CCX A; 2R93 A; 3FKI A; 5FTL A; 2WB1 A; 1E61 A; 1Y1W A; 3ZJT A; 2PMZ A; 3QQ8 A; 2AE0 X; 2PI8 A; 3CQZ A; 2B25 A; 5DYG A; 2B63 A; 2A6E D; 4NOH A; 1VC3 B; 1E60 A; 1DMS A; 1ZYR D; 3TIW A; 3HU3 A; 5EPP A; 5T5I D; 1I9G A; 2KY9 A; 1SMY D; 2IV2 X; 4C2M A; 2GF7 A; 4FIB A; 1SFO A; 5GLF A; 2LW6 A; 4AS1 A; 2A68 D; 4AQ7 A; 1TWC A; 3QWZ A; 3LGA A; 1KQG A; 3LHD A; 2JIO A; 2VPW A; 4RV0 A; 1CR5 A; 5FTN A; 1PYQ A; 1TMO A; 1TWH A; 3GTJ A; 2MM0 A; 5D6X A; 1KQF A; 2GAE A; 3GTO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
