1WLFA

Structure of the n-terminal domain of pex1 aaa-atpase: characterization of a putative adaptor-binding domain
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
167
structure length
164
Chain Sequence
GGAVVTVAFTNARDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the N-terminal Domain of PEX1 AAA-ATPase: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
pubmed doi rcsb
molecule tags Protein transport
source organism Mus musculus
molecule keywords Peroxisome biogenesis factor 1
total genus 42
structure length 164
sequence length 167
ec nomenclature
pdb deposition date 2004-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal
A PF09263 PEX-2N Peroxisome biogenesis factor 1, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1wlfA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 1wlfA02
1H5NA 1AW8B 1VC3B 4AYBA 1PYUB 1K83A 1Y5IA 1PQFA 2Y0SA 4AAYA 1TWAA 1Y1VA 2R93A 1WCMA 4KO8A 2JIPA 1R9TA 1H0HA 2EEOB 5FTLA 3GTJA 3GTPA 1ZC1A 1PYQA 1SFOA 2VPYA 1E61A 2DMRA 4AOKB 1TWFA 1QCSA 1TWCA 1Y4ZA 3H0GA 1R7RA 2V45A 3GTGA 1E18A 1KQFA 3TIWA 2NYAA 2JA7A 3HU1A 1SIWA 3GTLA 5FTJA 2VPWA 1DMSA 1G8JA 1IW7D 3HKZA 1EU1A 3GTMA 2PJHB 2KI8A 2JA6A 4GA6A 1AA6A 3CQZA 1TMOA 1TWHA 1Q16A 4RV0A 2NAPA 4GA5A 3IR7A 2E2IA 4DMRA 3GTOA 3QC8A 3FKIA 5FTNA 3QWZA 5C1BA 2NVXA 3ML1A 2VUMA 2JIMA 4C2MA 1CZ5A 2YUJA 1S3SA 1UHEA 2WAQA 3DMRA 3IR6A 3TM7B 3CF2A 2V3VA 1KQGA 2E7ZA 2JIQA 3PLXB 2IV2X 4CRYG 5DYIA 1DMRA 1E60A 2YU9A 1FDOA 4KLNA 3GTQA 4AONB 2NVYA 1Y1WA 1PQEA 1UHDA 5T5ID 1PPYA 2JA5A 1FDIA 5FTMA 1I50A 4CS0A 2B63A 1PQHA 1E32A 2R92A 1QDNA 1R27A 4KDLA 5DYGA 2E2HA 3HU2A 2JIRA 2JIOA 3QQ8A 3HU3A 4CRZA 4D7ZB 3OUGA 5B6CA 2C45A 1PT1A 1WLFA 1CZ4A 1YLEA 4KDIA 1G8KA 2R7ZA 4KODA 2JV2A 5C18A 5T5MD 3IR5A 3QQ7A 2VPXA 1OGYA 2PMZA 4QIWA 1E5VA 1PT0A 1TWGA 5EPPA 1I3QA 5GLFA 5FTKA 2WB1A 2VPZA 3O5AA 3GTKA 1CR5A 4AZDA
chains in the Genus database with same CATH superfamily
2Q1DX 1H5NA 1AW8B 1VC3B 3X2IA 4AYBA 1PYUB 1K83A 1Y5IA 1PQFA 2Y0SA 4AAYA 1TWAA 2HCZX 4FIBA 3ZJTA 3FPTA 1Y1VA 1O54A 2R93A 1WCMA 2QQRA 4UC4A 4KO8A 2Q18X 3LGAA 2A69D 2JIPA 3X2NA 2XDPA 1R9TA 1H0HA 2EEOB 5FTLA 3GTJA 3GTPA 3SULA 2Q19X 1ZC1A 5D6YA 5GM9A 3X2GA 1PYQA 1SFOA 1ZYRD 2VPYA 3X2HA 1E61A 2DMRA 4AOKB 2LW6A 4FG4A 4ARCA 2QQSA 1TWFA 1QCSA 3ENGA 5D6XA 1TWCA 1Y4ZA 3H0GA 1R7RA 2V45A 3GTGA 3ZJVA 1OA9A 5H4UA 1E18A 1KQFA 3MB5A 5CCXA 3CZBA 3TIWA 5GLXA 1BW4A 2NYAA 2JA7A 1WC2A 2A6HD 3HU1A 4L48A 1SIWA 4JP6A 3GTLA 2GFAA 5FTJA 2VPWA 2PWYA 5D6WA 1DMSA 1G8JA 2YVLA 5EQJB 1IW7D 3X2OA 3HKZA 1EU1A 2CW0D 3GTMA 2KY9A 2PJHB 2KI8A 1BW3A 2JA6A 3X2JA 3D30A 4GA6A 3X2KA 1AA6A 3CQZA 1YNND 1SMYD 1TMOA 4JP7A 3SUMA 1OA7A 1TWHA 1Q16A 4RV0A 2NAPA 4GA5A 3IR7A 4AVRA 2A6ED 2E2IA 4DMRA 3X2MA 2PNWA 3GTOA 3QC8A 3FKIA 5FTNA 2ENGA 4AS1A 5CCBA 3QWZA 5C1BA 2NVXA 3ML1A 2AE0X 2PJJA 5GLYA 2VUMA 2JIMA 4NOHA 4ENGA 4ZM7A 4C2MA 2PI8A 1CZ5A 2Q1AX 3LHDA 2YUJA 1S3SA 1UHEA 2WAQA 3DMRA 3IR6A 2O5JD 3TM7B 2MM2A 1HD5A 2V3VA 3CF2A 4JCWA 1KQGA 2E7ZA 2JIQA 3PLXB 2IV2X 4CRYG 5DYIA 5ERGB 1DMRA 1E60A 4FG2A 2YU9A 2Q1CX 5CD1A 3ZJUA 1N10A 1FDOA 2BE5D 4KLNA 3GTQA 2PICA 4AONB 2NVYA 4AQ7A 1Y1WA 1YNJD 1PQEA 1UHDA 5T5ID 1PPYA 2JA5A 1FDIA 3FPUA 2B25A 3M3GA 5FTMA 1I50A 4CS0A 2B63A 1PQHA 1E32A 4FFTA 2R92A 1QDNA 1R27A 4KDLA 5DYGA 2E2HA 3HU2A 2JIRA 2JIOA 3QQ8A 2G5DA 3HU3A 4AZDA 4CRZA 3OUGA 4D7ZB 3FPRA 4ARIA 1I9GA 5B6CA 2C45A 4CQNA 2KQAA 1PT1A 1WLFA 1CZ4A 1YLEA 4KDIA 1G8KA 2R7ZA 2A68D 4KODA 5C18A 5T5MD 2JV2A 2GF7A 3BQBA 3IR5A 3X2LA 3QQ7A 4FERA 2VPXA 1L8FA 1OGYA 2PMZA 3SUJA 4QIWA 3SUKA 1E5VA 1PT0A 2BH0A 4JJOA 1TWGA 2GAEA 5EPPA 3X2PA 1I3QA 5GLFA 5FTKA 3ZGZA 2WB1A 2VPZA 3O5AA 3GTKA 1CR5A 2MM0A 4JS7A 2G6GA
chains in the Genus database with same CATH topology
2Q1DX 1H5NA 1AW8B 1VC3B 4AYBA 1PYUB 1K83A 1Y5IA 1PQFA 2Y0SA 4AAYA 1TWAA 4FIBA 3ZJTA 3FPTA 1Y1VA 1O54A 2R93A 1WCMA 2QQRA 4UC4A 4KO8A 2Q18X 3LGAA 2A69D 2JIPA 2XDPA 1R9TA 1H0HA 2EEOB 5FTLA 3GTJA 3GTPA 2Q19X 1ZC1A 5D6YA 1PYQA 1SFOA 1ZYRD 2VPYA 1E61A 2DMRA 4AOKB 2LW6A 4ARCA 2QQSA 1TWFA 1QCSA 5D6XA 1TWCA 1Y4ZA 3H0GA 1R7RA 2V45A 3GTGA 3ZJVA 1E18A 1KQFA 3MB5A 5CCXA 3CZBA 3TIWA 2NYAA 2JA7A 2A6HD 3HU1A 1SIWA 3GTLA 2GFAA 5FTJA 2VPWA 2PWYA 5D6WA 1DMSA 1G8JA 2YVLA 5EQJB 1IW7D 3HKZA 1EU1A 2CW0D 3GTMA 2KY9A 2PJHB 2KI8A 2JA6A 4GA6A 1AA6A 3CQZA 1YNND 1SMYD 1TMOA 1TWHA 1Q16A 4RV0A 2NAPA 4GA5A 3IR7A 2A6ED 2E2IA 4DMRA 2PNWA 3GTOA 3QC8A 3FKIA 5FTNA 4AS1A 5CCBA 3QWZA 5C1BA 2NVXA 3ML1A 2AE0X 2PJJA 2VUMA 2JIMA 4NOHA 4C2MA 2PI8A 1CZ5A 2Q1AX 3LHDA 2YUJA 1S3SA 1UHEA 2WAQA 3DMRA 3IR6A 2O5JD 3TM7B 2MM2A 3CF2A 2V3VA 1KQGA 2E7ZA 2JIQA 3PLXB 2IV2X 4CRYG 5DYIA 5ERGB 1DMRA 1E60A 2Q1CX 2YU9A 5CD1A 3ZJUA 1FDOA 2BE5D 4KLNA 3GTQA 2PICA 4AONB 2NVYA 4AQ7A 1Y1WA 1YNJD 1PQEA 1UHDA 5T5ID 1PPYA 2JA5A 1FDIA 3FPUA 2B25A 5FTMA 1I50A 4CS0A 2B63A 1PQHA 1E32A 2R92A 1QDNA 1R27A 4KDLA 5DYGA 2E2HA 3HU2A 2JIRA 2JIOA 3QQ8A 2G5DA 3HU3A 4AZDA 4CRZA 3OUGA 4D7ZB 3FPRA 4ARIA 1I9GA 5B6CA 2C45A 4CQNA 1PT1A 1WLFA 1CZ4A 1YLEA 4KDIA 1G8KA 2R7ZA 2A68D 4KODA 5C18A 5T5MD 2JV2A 2GF7A 3BQBA 3IR5A 3QQ7A 2VPXA 1OGYA 2PMZA 4QIWA 1E5VA 1PT0A 1TWGA 2GAEA 5EPPA 1I3QA 5GLFA 5FTKA 3ZGZA 2WB1A 2VPZA 3O5AA 3GTKA 1CR5A 2MM0A 2G6GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H5N A;  1AW8 B;  1VC3 B;  4AYB A;  1PYU B;  1K83 A;  1Y5I A;  1PQF A;  2Y0S A;  4AAY A;  1TWA A;  1Y1V A;  2R93 A;  1WCM A;  4KO8 A;  2JIP A;  1R9T A;  1H0H A;  2EEO B;  5FTL A;  3GTJ A;  3GTP A;  1ZC1 A;  1PYQ A;  1SFO A;  2VPY A;  1E61 A;  2DMR A;  4AOK B;  1TWF A;  1QCS A;  1TWC A;  1Y4Z A;  3H0G A;  1R7R A;  2V45 A;  3GTG A;  1E18 A;  1KQF A;  3TIW A;  2NYA A;  2JA7 A;  3HU1 A;  1SIW A;  3GTL A;  5FTJ A;  2VPW A;  1DMS A;  1G8J A;  1IW7 D;  3HKZ A;  1EU1 A;  3GTM A;  2PJH B;  2KI8 A;  2JA6 A;  4GA6 A;  1AA6 A;  3CQZ A;  1TMO A;  1TWH A;  1Q16 A;  4RV0 A;  2NAP A;  4GA5 A;  3IR7 A;  2E2I A;  4DMR A;  3GTO A;  3QC8 A;  3FKI A;  5FTN A;  3QWZ A;  5C1B A;  2NVX A;  3ML1 A;  2VUM A;  2JIM A;  4C2M A;  1CZ5 A;  2YUJ A;  1S3S A;  1UHE A;  2WAQ A;  3DMR A;  3IR6 A;  3TM7 B;  3CF2 A;  2V3V A;  1KQG A;  2E7Z A;  2JIQ A;  3PLX B;  2IV2 X;  4CRY G;  5DYI A;  1DMR A;  1E60 A;  2YU9 A;  1FDO A;  4KLN A;  3GTQ A;  4AON B;  2NVY A;  1Y1W A;  1PQE A;  1UHD A;  5T5I D;  1PPY A;  2JA5 A;  1FDI A;  5FTM A;  1I50 A;  4CS0 A;  2B63 A;  1PQH A;  1E32 A;  2R92 A;  1QDN A;  1R27 A;  4KDL A;  5DYG A;  2E2H A;  3HU2 A;  2JIR A;  2JIO A;  3QQ8 A;  3HU3 A;  4CRZ A;  4D7Z B;  3OUG A;  5B6C A;  2C45 A;  1PT1 A;  1WLF A;  1CZ4 A;  1YLE A;  4KDI A;  1G8K A;  2R7Z A;  4KOD A;  2JV2 A;  5C18 A;  5T5M D;  3IR5 A;  3QQ7 A;  2VPX A;  1OGY A;  2PMZ A;  4QIW A;  1E5V A;  1PT0 A;  1TWG A;  5EPP A;  1I3Q A;  5GLF A;  5FTK A;  2WB1 A;  2VPZ A;  3O5A A;  3GTK A;  1CR5 A;  4AZD A; 
#chains in the Genus database with same CATH topology
 2Q1D X;  1H5N A;  1AW8 B;  1VC3 B;  3X2I A;  4AYB A;  1PYU B;  1K83 A;  1Y5I A;  1PQF A;  2Y0S A;  4AAY A;  1TWA A;  2HCZ X;  4FIB A;  3ZJT A;  3FPT A;  1Y1V A;  1O54 A;  2R93 A;  1WCM A;  2QQR A;  4UC4 A;  4KO8 A;  2Q18 X;  3LGA A;  2A69 D;  2JIP A;  3X2N A;  2XDP A;  1R9T A;  1H0H A;  2EEO B;  5FTL A;  3GTJ A;  3GTP A;  3SUL A;  2Q19 X;  1ZC1 A;  5D6Y A;  5GM9 A;  3X2G A;  1PYQ A;  1SFO A;  1ZYR D;  2VPY A;  3X2H A;  1E61 A;  2DMR A;  4AOK B;  2LW6 A;  4FG4 A;  4ARC A;  2QQS A;  1TWF A;  1QCS A;  3ENG A;  5D6X A;  1TWC A;  1Y4Z A;  3H0G A;  1R7R A;  2V45 A;  3GTG A;  3ZJV A;  1OA9 A;  5H4U A;  1E18 A;  1KQF A;  3MB5 A;  5CCX A;  3CZB A;  3TIW A;  5GLX A;  1BW4 A;  2NYA A;  2JA7 A;  1WC2 A;  2A6H D;  3HU1 A;  4L48 A;  1SIW A;  4JP6 A;  3GTL A;  2GFA A;  5FTJ A;  2VPW A;  2PWY A;  5D6W A;  1DMS A;  1G8J A;  2YVL A;  5EQJ B;  1IW7 D;  3X2O A;  3HKZ A;  1EU1 A;  2CW0 D;  3GTM A;  2KY9 A;  2PJH B;  2KI8 A;  1BW3 A;  2JA6 A;  3X2J A;  3D30 A;  4GA6 A;  3X2K A;  1AA6 A;  3CQZ A;  1YNN D;  1SMY D;  1TMO A;  4JP7 A;  3SUM A;  1OA7 A;  1TWH A;  1Q16 A;  4RV0 A;  2NAP A;  4GA5 A;  3IR7 A;  4AVR A;  2A6E D;  2E2I A;  4DMR A;  3X2M A;  2PNW A;  3GTO A;  3QC8 A;  3FKI A;  5FTN A;  2ENG A;  4AS1 A;  5CCB A;  3QWZ A;  5C1B A;  2NVX A;  3ML1 A;  2AE0 X;  2PJJ A;  5GLY A;  2VUM A;  2JIM A;  4NOH A;  4ENG A;  4ZM7 A;  4C2M A;  2PI8 A;  1CZ5 A;  2Q1A X;  3LHD A;  2YUJ A;  1S3S A;  1UHE A;  2WAQ A;  3DMR A;  3IR6 A;  2O5J D;  3TM7 B;  2MM2 A;  1HD5 A;  2V3V A;  3CF2 A;  4JCW A;  1KQG A;  2E7Z A;  2JIQ A;  3PLX B;  2IV2 X;  4CRY G;  5DYI A;  5ERG B;  1DMR A;  1E60 A;  4FG2 A;  2YU9 A;  2Q1C X;  5CD1 A;  3ZJU A;  1N10 A;  1FDO A;  2BE5 D;  4KLN A;  3GTQ A;  2PIC A;  4AON B;  2NVY A;  4AQ7 A;  1Y1W A;  1YNJ D;  1PQE A;  1UHD A;  5T5I D;  1PPY A;  2JA5 A;  1FDI A;  3FPU A;  2B25 A;  3M3G A;  5FTM A;  1I50 A;  4CS0 A;  2B63 A;  1PQH A;  1E32 A;  4FFT A;  2R92 A;  1QDN A;  1R27 A;  4KDL A;  5DYG A;  2E2H A;  3HU2 A;  2JIR A;  2JIO A;  3QQ8 A;  2G5D A;  3HU3 A;  4AZD A;  4CRZ A;  3OUG A;  4D7Z B;  3FPR A;  4ARI A;  1I9G A;  5B6C A;  2C45 A;  4CQN A;  2KQA A;  1PT1 A;  1WLF A;  1CZ4 A;  1YLE A;  4KDI A;  1G8K A;  2R7Z A;  2A68 D;  4KOD A;  5C18 A;  5T5M D;  2JV2 A;  2GF7 A;  3BQB A;  3IR5 A;  3X2L A;  3QQ7 A;  4FER A;  2VPX A;  1L8F A;  1OGY A;  2PMZ A;  3SUJ A;  4QIW A;  3SUK A;  1E5V A;  1PT0 A;  2BH0 A;  4JJO A;  1TWG A;  2GAE A;  5EPP A;  3X2P A;  1I3Q A;  5GLF A;  5FTK A;  3ZGZ A;  2WB1 A;  2VPZ A;  3O5A A;  3GTK A;  1CR5 A;  2MM0 A;  4JS7 A;  2G6G A; 
#chains in the Genus database with same CATH homology
 2Q1D X;  1H5N A;  1AW8 B;  1VC3 B;  4AYB A;  1PYU B;  1K83 A;  1Y5I A;  1PQF A;  2Y0S A;  4AAY A;  1TWA A;  4FIB A;  3ZJT A;  3FPT A;  1Y1V A;  1O54 A;  2R93 A;  1WCM A;  2QQR A;  4UC4 A;  4KO8 A;  2Q18 X;  3LGA A;  2A69 D;  2JIP A;  2XDP A;  1R9T A;  1H0H A;  2EEO B;  5FTL A;  3GTJ A;  3GTP A;  2Q19 X;  1ZC1 A;  5D6Y A;  1PYQ A;  1SFO A;  1ZYR D;  2VPY A;  1E61 A;  2DMR A;  4AOK B;  2LW6 A;  4ARC A;  2QQS A;  1TWF A;  1QCS A;  5D6X A;  1TWC A;  1Y4Z A;  3H0G A;  1R7R A;  2V45 A;  3GTG A;  3ZJV A;  1E18 A;  1KQF A;  3MB5 A;  5CCX A;  3CZB A;  3TIW A;  2NYA A;  2JA7 A;  2A6H D;  3HU1 A;  1SIW A;  3GTL A;  2GFA A;  5FTJ A;  2VPW A;  2PWY A;  5D6W A;  1DMS A;  1G8J A;  2YVL A;  5EQJ B;  1IW7 D;  3HKZ A;  1EU1 A;  2CW0 D;  3GTM A;  2KY9 A;  2PJH B;  2KI8 A;  2JA6 A;  4GA6 A;  1AA6 A;  3CQZ A;  1YNN D;  1SMY D;  1TMO A;  1TWH A;  1Q16 A;  4RV0 A;  2NAP A;  4GA5 A;  3IR7 A;  2A6E D;  2E2I A;  4DMR A;  2PNW A;  3GTO A;  3QC8 A;  3FKI A;  5FTN A;  4AS1 A;  5CCB A;  3QWZ A;  5C1B A;  2NVX A;  3ML1 A;  2AE0 X;  2PJJ A;  2VUM A;  2JIM A;  4NOH A;  4C2M A;  2PI8 A;  1CZ5 A;  2Q1A X;  3LHD A;  2YUJ A;  1S3S A;  1UHE A;  2WAQ A;  3DMR A;  3IR6 A;  2O5J D;  3TM7 B;  2MM2 A;  3CF2 A;  2V3V A;  1KQG A;  2E7Z A;  2JIQ A;  3PLX B;  2IV2 X;  4CRY G;  5DYI A;  5ERG B;  1DMR A;  1E60 A;  2Q1C X;  2YU9 A;  5CD1 A;  3ZJU A;  1FDO A;  2BE5 D;  4KLN A;  3GTQ A;  2PIC A;  4AON B;  2NVY A;  4AQ7 A;  1Y1W A;  1YNJ D;  1PQE A;  1UHD A;  5T5I D;  1PPY A;  2JA5 A;  1FDI A;  3FPU A;  2B25 A;  5FTM A;  1I50 A;  4CS0 A;  2B63 A;  1PQH A;  1E32 A;  2R92 A;  1QDN A;  1R27 A;  4KDL A;  5DYG A;  2E2H A;  3HU2 A;  2JIR A;  2JIO A;  3QQ8 A;  2G5D A;  3HU3 A;  4AZD A;  4CRZ A;  3OUG A;  4D7Z B;  3FPR A;  4ARI A;  1I9G A;  5B6C A;  2C45 A;  4CQN A;  1PT1 A;  1WLF A;  1CZ4 A;  1YLE A;  4KDI A;  1G8K A;  2R7Z A;  2A68 D;  4KOD A;  5C18 A;  5T5M D;  2JV2 A;  2GF7 A;  3BQB A;  3IR5 A;  3QQ7 A;  2VPX A;  1OGY A;  2PMZ A;  4QIW A;  1E5V A;  1PT0 A;  1TWG A;  2GAE A;  5EPP A;  1I3Q A;  5GLF A;  5FTK A;  3ZGZ A;  2WB1 A;  2VPZ A;  3O5A A;  3GTK A;  1CR5 A;  2MM0 A;  2G6G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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