1WLFA

Structure of the n-terminal domain of pex1 aaa-atpase: characterization of a putative adaptor-binding domain
Total Genus 42
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
167
structure length
164
Chain Sequence
GGAVVTVAFTNARDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (78-84)EMPTYAH3 (113-121)S1 (15-22)AH4 (126-132)S5 (60-62)TIV1 (51-54)S4 (56-58)S2 (29-31)AH1 (33-39)TII1 (42-45)S6 (73-77)S12 (151-161)S11 (141-148)TII2 (87-90)S7 (90-96)TII3 (138-141)TVIII1 (97-100)S9 (105-110)TIV3 (123-126)S10 (136-137)TIV4 (160-163)S8 (101-102)TVIII2 (103-106)S3 (47-50)TIV2 (63-66)Updating...
connected with : NaN
molecule tags Protein transport
source organism Mus musculus
publication title Structure of the N-terminal Domain of PEX1 AAA-ATPase: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
pubmed doi rcsb
molecule keywords Peroxisome biogenesis factor 1
total genus 42
structure length 164
sequence length 167
ec nomenclature
pdb deposition date 2004-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal
A PF09263 PEX-2N Peroxisome biogenesis factor 1, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1wlfA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 1wlfA02
1S3SA 1TWFA 2R7ZA 1PQEA 5DYIA 1SFOA 1I3QA 3OUGA 1AW8B 1E5VA 1CZ5A 4KDIA 3HU2A 2NVXA 1QCSA 4CRZA 3O5AA 2E7ZA 1PYUB 1CZ4A 3ML1A 1PYQA 2DMRA 2NAPA 2NVYA 3FKIA 4CS0A 1WCMA 2JIOA 4AYBA 5B6CA 5FTNA 3GTQA 3HKZA 3GTOA 2C45A 2VUMA 1G8KA 1R9TA 2WAQA 4D7ZB 1UHDA 5FTKA 2NYAA 1AA6A 4GA5A 4AZDA 1K83A 2V45A 1KQGA 1R7RA 1H5NA 1Y1WA 4CRYG 2JIRA 1E61A 5C1BA 2JIPA 1Y1VA 2E2IA 2WB1A 2VPYA 2JIMA 1FDIA 3CF2A 2KI8A 3TIWA 3GTGA 1Q16A 2V3VA 2JA6A 1DMRA 3IR7A 1FDOA 2PJHB 1E18A 3DMRA 3CQZA 3GTMA 2B63A 1I50A 2YU9A 5FTLA 3QQ8A 2VPXA 1WLFA 1PT0A 1TWAA 5DYGA 2VPZA 2R93A 3HU1A 2Y0SA 1PQHA 4DMRA 1EU1A 1QDNA 3IR6A 1ZC1A 2PMZA 3IR5A 1CR5A 4RV0A 2EEOB 4QIWA 4C2MA 1Y4ZA 4KODA 5FTJA 3TM7B 4KO8A 3PLXB 5C18A 3HU3A 1OGYA 3H0GA 3GTLA 1E32A 4KDLA 4KLNA 1PPYA 5T5MD 1TWGA 5EPPA 1YLEA 2JA7A 2YUJA 3QQ7A 1Y5IA 1KQFA 3GTPA 5T5ID 1H0HA 1DMSA 2JA5A 1G8JA 1TWCA 2IV2X 1PT1A 1UHEA 3QC8A 2VPWA 5GLFA 4GA6A 1SIWA 1IW7D 5FTMA 1VC3B 2JIQA 4AONB 4AAYA 3GTJA 3QWZA 2JV2A 2E2HA 1PQFA 2R92A 1E60A 1TMOA 3GTKA 1R27A 1TWHA 4AOKB
chains in the Genus database with same CATH superfamily
1S3SA 1TWFA 5GM9A 2R7ZA 1PQEA 2A69D 5DYIA 3ZJVA 3FPUA 2O5JD 1SFOA 3X2MA 2PWYA 1I3QA 3OUGA 2PI8A 4FG2A 1ZYRD 1AW8B 2CW0D 1E5VA 2AE0X 2KQAA 5GLYA 1CZ5A 4KDIA 3HU2A 2MM2A 5D6YA 2YVLA 1OA9A 2NVXA 1QCSA 4CRZA 3ZJTA 3X2OA 3X2GA 3SUMA 4NOHA 3O5AA 2E7ZA 1O54A 1PYUB 1CZ4A 3X2KA 3ML1A 1PYQA 3D30A 4CQNA 3X2IA 3CZBA 2B25A 1N10A 2DMRA 4FERA 4L48A 2NAPA 2NVYA 3FKIA 4CS0A 1WCMA 2JIOA 4JP6A 4FIBA 4AYBA 3SULA 5B6CA 5FTNA 3GTQA 3HKZA 3GTOA 2C45A 2A6HD 2A68D 2VUMA 1G8KA 1R9TA 5H4UA 2WAQA 4D7ZB 3LHDA 1UHDA 1HD5A 2NYAA 4JJOA 4GA5A 5FTKA 3SUKA 1AA6A 2QQSA 4AZDA 3LGAA 2PNWA 1K83A 2V45A 1KQGA 1R7RA 5GLXA 1H5NA 1Y1WA 2QQRA 4CRYG 4JP7A 3X2NA 2JIRA 1E61A 5C1BA 2JIPA 1Y1VA 2E2IA 2WB1A 2VPYA 2JIMA 1FDIA 1WC2A 2Q18X 2G5DA 3CF2A 2KI8A 3X2LA 3TIWA 3MB5A 3GTGA 1Q16A 2V3VA 4JS7A 2JA6A 3FPRA 4FFTA 1DMRA 3IR7A 1FDOA 4JCWA 2PJHB 1E18A 2ENGA 2XDPA 2Q19X 3DMRA 3CQZA 2LW6A 3GTMA 2B63A 1I50A 2YU9A 5FTLA 3QQ8A 2Q1CX 2VPXA 1WLFA 2Q1DX 1PT0A 1TWAA 5DYGA 2VPZA 2R93A 3FPTA 3HU1A 2Y0SA 1BW3A 5D6XA 1YNND 1PQHA 4DMRA 1EU1A 4ZM7A 1QDNA 3IR6A 5CCBA 1ZC1A 3M3GA 2PMZA 1I9GA 5ERGB 3IR5A 4AS1A 4ARIA 1CR5A 4RV0A 4AOKB 2EEOB 4QIWA 4C2MA 2A6ED 1Y4ZA 4KODA 2MM0A 5FTJA 1OA7A 5CCXA 3TM7B 4KO8A 4AQ7A 3PLXB 5C18A 3HU3A 1OGYA 3H0GA 3X2HA 3X2JA 3GTLA 1E32A 3X2PA 2GFAA 4KDLA 4KLNA 1PPYA 5T5MD 2PICA 2BE5D 1TWGA 5EPPA 1YLEA 2JA7A 2YUJA 3QQ7A 1Y5IA 5CD1A 1KQFA 2KY9A 3GTPA 5T5ID 1H0HA 1DMSA 2JA5A 1G8JA 1TWCA 2IV2X 2GAEA 2GF7A 3SUJA 1PT1A 1UHEA 2G6GA 2HCZX 2VPWA 3QC8A 5GLFA 4GA6A 1SIWA 3BQBA 5D6WA 1IW7D 4ENGA 3ENGA 3ZJUA 5EQJB 4ARCA 3ZGZA 5FTMA 1L8FA 1VC3B 2JIQA 4AONB 4AAYA 3QWZA 3GTJA 2JV2A 2E2HA 1PQFA 4AVRA 2R92A 1E60A 1TMOA 2Q1AX 2BH0A 1R27A 1TWHA 3GTKA 1SMYD 1BW4A 4FG4A 1YNJD 2PJJA 4UC4A
chains in the Genus database with same CATH topology
1S3SA 1TWFA 2R7ZA 1PQEA 2A69D 5DYIA 3ZJVA 3FPUA 2O5JD 1SFOA 2PWYA 1I3QA 3OUGA 2PI8A 1ZYRD 1AW8B 2CW0D 1E5VA 2AE0X 1CZ5A 4KDIA 3HU2A 2MM2A 5D6YA 2YVLA 2NVXA 1QCSA 4CRZA 4NOHA 3O5AA 2E7ZA 1O54A 1PYUB 1CZ4A 3ML1A 1PYQA 4CQNA 3CZBA 2B25A 2DMRA 2NAPA 2NVYA 3FKIA 4CS0A 1WCMA 2JIOA 4FIBA 4AYBA 5B6CA 5FTNA 3GTQA 3HKZA 3GTOA 2C45A 2A6HD 2A68D 2VUMA 1G8KA 1R9TA 2WAQA 4D7ZB 3LHDA 1UHDA 5FTKA 2NYAA 1AA6A 4GA5A 2QQSA 3ZJTA 4AZDA 3LGAA 2PNWA 1K83A 2V45A 1KQGA 1R7RA 1H5NA 1Y1WA 2QQRA 4CRYG 2JIRA 1E61A 5C1BA 2JIPA 1Y1VA 2E2IA 2WB1A 2VPYA 2JIMA 1FDIA 2Q18X 2G5DA 3CF2A 2KI8A 3TIWA 3MB5A 3GTGA 1Q16A 2V3VA 2JA6A 3FPRA 1DMRA 3IR7A 1FDOA 2PJHB 1E18A 2XDPA 2Q19X 3DMRA 3CQZA 2LW6A 3GTMA 2B63A 1I50A 2YU9A 5FTLA 3QQ8A 2Q1CX 2VPXA 1WLFA 2Q1DX 1PT0A 1TWAA 5DYGA 2VPZA 2R93A 3FPTA 3HU1A 2Y0SA 5D6XA 1YNND 1PQHA 4DMRA 1EU1A 1QDNA 3IR6A 5CCBA 1ZC1A 5ERGB 2PMZA 1I9GA 4AS1A 3IR5A 4ARIA 1CR5A 4RV0A 2EEOB 4QIWA 4C2MA 2A6ED 1Y4ZA 4KODA 2MM0A 5FTJA 5CCXA 3TM7B 4KO8A 4AQ7A 3PLXB 5C18A 3HU3A 1OGYA 3H0GA 3GTLA 1E32A 2GFAA 4KDLA 4KLNA 1PPYA 5T5MD 2PICA 2BE5D 1TWGA 5EPPA 1YLEA 2JA7A 2YUJA 3QQ7A 1Y5IA 5CD1A 1KQFA 2KY9A 3GTPA 5T5ID 1H0HA 1DMSA 2JA5A 1G8JA 1TWCA 2IV2X 2GAEA 2GF7A 1PT1A 1UHEA 2G6GA 3QC8A 2VPWA 5GLFA 4GA6A 1SIWA 3BQBA 5D6WA 1IW7D 3ZJUA 3ZGZA 5EQJB 4ARCA 5FTMA 1VC3B 2JIQA 4AONB 4AAYA 3GTJA 3QWZA 2JV2A 2E2HA 1PQFA 2R92A 1E60A 1TMOA 2Q1AX 3GTKA 1R27A 1TWHA 1SMYD 4AOKB 1YNJD 2PJJA 4UC4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S3S A;  1TWF A;  2R7Z A;  1PQE A;  5DYI A;  1SFO A;  1I3Q A;  3OUG A;  1AW8 B;  1E5V A;  1CZ5 A;  4KDI A;  3HU2 A;  2NVX A;  1QCS A;  4CRZ A;  3O5A A;  2E7Z A;  1PYU B;  1CZ4 A;  3ML1 A;  1PYQ A;  2DMR A;  2NAP A;  2NVY A;  3FKI A;  4CS0 A;  1WCM A;  2JIO A;  4AYB A;  5B6C A;  5FTN A;  3GTQ A;  3HKZ A;  3GTO A;  2C45 A;  2VUM A;  1G8K A;  1R9T A;  2WAQ A;  4D7Z B;  1UHD A;  5FTK A;  2NYA A;  1AA6 A;  4GA5 A;  4AZD A;  1K83 A;  2V45 A;  1KQG A;  1R7R A;  1H5N A;  1Y1W A;  4CRY G;  2JIR A;  1E61 A;  5C1B A;  2JIP A;  1Y1V A;  2E2I A;  2WB1 A;  2VPY A;  2JIM A;  1FDI A;  3CF2 A;  2KI8 A;  3TIW A;  3GTG A;  1Q16 A;  2V3V A;  2JA6 A;  1DMR A;  3IR7 A;  1FDO A;  2PJH B;  1E18 A;  3DMR A;  3CQZ A;  3GTM A;  2B63 A;  1I50 A;  2YU9 A;  5FTL A;  3QQ8 A;  2VPX A;  1WLF A;  1PT0 A;  1TWA A;  5DYG A;  2VPZ A;  2R93 A;  3HU1 A;  2Y0S A;  1PQH A;  4DMR A;  1EU1 A;  1QDN A;  3IR6 A;  1ZC1 A;  2PMZ A;  3IR5 A;  1CR5 A;  4RV0 A;  2EEO B;  4QIW A;  4C2M A;  1Y4Z A;  4KOD A;  5FTJ A;  3TM7 B;  4KO8 A;  3PLX B;  5C18 A;  3HU3 A;  1OGY A;  3H0G A;  3GTL A;  1E32 A;  4KDL A;  4KLN A;  1PPY A;  5T5M D;  1TWG A;  5EPP A;  1YLE A;  2JA7 A;  2YUJ A;  3QQ7 A;  1Y5I A;  1KQF A;  3GTP A;  5T5I D;  1H0H A;  1DMS A;  2JA5 A;  1G8J A;  1TWC A;  2IV2 X;  1PT1 A;  1UHE A;  3QC8 A;  2VPW A;  5GLF A;  4GA6 A;  1SIW A;  1IW7 D;  5FTM A;  1VC3 B;  2JIQ A;  4AON B;  4AAY A;  3GTJ A;  3QWZ A;  2JV2 A;  2E2H A;  1PQF A;  2R92 A;  1E60 A;  1TMO A;  3GTK A;  1R27 A;  1TWH A;  4AOK B; 
#chains in the Genus database with same CATH topology
 1S3S A;  1TWF A;  5GM9 A;  2R7Z A;  1PQE A;  2A69 D;  5DYI A;  3ZJV A;  3FPU A;  2O5J D;  1SFO A;  3X2M A;  2PWY A;  1I3Q A;  3OUG A;  2PI8 A;  4FG2 A;  1ZYR D;  1AW8 B;  2CW0 D;  1E5V A;  2AE0 X;  2KQA A;  5GLY A;  1CZ5 A;  4KDI A;  3HU2 A;  2MM2 A;  5D6Y A;  2YVL A;  1OA9 A;  2NVX A;  1QCS A;  4CRZ A;  3ZJT A;  3X2O A;  3X2G A;  3SUM A;  4NOH A;  3O5A A;  2E7Z A;  1O54 A;  1PYU B;  1CZ4 A;  3X2K A;  3ML1 A;  1PYQ A;  3D30 A;  4CQN A;  3X2I A;  3CZB A;  2B25 A;  1N10 A;  2DMR A;  4FER A;  4L48 A;  2NAP A;  2NVY A;  3FKI A;  4CS0 A;  1WCM A;  2JIO A;  4JP6 A;  4FIB A;  4AYB A;  3SUL A;  5B6C A;  5FTN A;  3GTQ A;  3HKZ A;  3GTO A;  2C45 A;  2A6H D;  2A68 D;  2VUM A;  1G8K A;  1R9T A;  5H4U A;  2WAQ A;  4D7Z B;  3LHD A;  1UHD A;  1HD5 A;  2NYA A;  4JJO A;  4GA5 A;  5FTK A;  3SUK A;  1AA6 A;  2QQS A;  4AZD A;  3LGA A;  2PNW A;  1K83 A;  2V45 A;  1KQG A;  1R7R A;  5GLX A;  1H5N A;  1Y1W A;  2QQR A;  4CRY G;  4JP7 A;  3X2N A;  2JIR A;  1E61 A;  5C1B A;  2JIP A;  1Y1V A;  2E2I A;  2WB1 A;  2VPY A;  2JIM A;  1FDI A;  1WC2 A;  2Q18 X;  2G5D A;  3CF2 A;  2KI8 A;  3X2L A;  3TIW A;  3MB5 A;  3GTG A;  1Q16 A;  2V3V A;  4JS7 A;  2JA6 A;  3FPR A;  4FFT A;  1DMR A;  3IR7 A;  1FDO A;  4JCW A;  2PJH B;  1E18 A;  2ENG A;  2XDP A;  2Q19 X;  3DMR A;  3CQZ A;  2LW6 A;  3GTM A;  2B63 A;  1I50 A;  2YU9 A;  5FTL A;  3QQ8 A;  2Q1C X;  2VPX A;  1WLF A;  2Q1D X;  1PT0 A;  1TWA A;  5DYG A;  2VPZ A;  2R93 A;  3FPT A;  3HU1 A;  2Y0S A;  1BW3 A;  5D6X A;  1YNN D;  1PQH A;  4DMR A;  1EU1 A;  4ZM7 A;  1QDN A;  3IR6 A;  5CCB A;  1ZC1 A;  3M3G A;  2PMZ A;  1I9G A;  5ERG B;  3IR5 A;  4AS1 A;  4ARI A;  1CR5 A;  4RV0 A;  4AOK B;  2EEO B;  4QIW A;  4C2M A;  2A6E D;  1Y4Z A;  4KOD A;  2MM0 A;  5FTJ A;  1OA7 A;  5CCX A;  3TM7 B;  4KO8 A;  4AQ7 A;  3PLX B;  5C18 A;  3HU3 A;  1OGY A;  3H0G A;  3X2H A;  3X2J A;  3GTL A;  1E32 A;  3X2P A;  2GFA A;  4KDL A;  4KLN A;  1PPY A;  5T5M D;  2PIC A;  2BE5 D;  1TWG A;  5EPP A;  1YLE A;  2JA7 A;  2YUJ A;  3QQ7 A;  1Y5I A;  5CD1 A;  1KQF A;  2KY9 A;  3GTP A;  5T5I D;  1H0H A;  1DMS A;  2JA5 A;  1G8J A;  1TWC A;  2IV2 X;  2GAE A;  2GF7 A;  3SUJ A;  1PT1 A;  1UHE A;  2G6G A;  2HCZ X;  2VPW A;  3QC8 A;  5GLF A;  4GA6 A;  1SIW A;  3BQB A;  5D6W A;  1IW7 D;  4ENG A;  3ENG A;  3ZJU A;  5EQJ B;  4ARC A;  3ZGZ A;  5FTM A;  1L8F A;  1VC3 B;  2JIQ A;  4AON B;  4AAY A;  3QWZ A;  3GTJ A;  2JV2 A;  2E2H A;  1PQF A;  4AVR A;  2R92 A;  1E60 A;  1TMO A;  2Q1A X;  2BH0 A;  1R27 A;  1TWH A;  3GTK A;  1SMY D;  1BW4 A;  4FG4 A;  1YNJ D;  2PJJ A;  4UC4 A; 
#chains in the Genus database with same CATH homology
 1S3S A;  1TWF A;  2R7Z A;  1PQE A;  2A69 D;  5DYI A;  3ZJV A;  3FPU A;  2O5J D;  1SFO A;  2PWY A;  1I3Q A;  3OUG A;  2PI8 A;  1ZYR D;  1AW8 B;  2CW0 D;  1E5V A;  2AE0 X;  1CZ5 A;  4KDI A;  3HU2 A;  2MM2 A;  5D6Y A;  2YVL A;  2NVX A;  1QCS A;  4CRZ A;  4NOH A;  3O5A A;  2E7Z A;  1O54 A;  1PYU B;  1CZ4 A;  3ML1 A;  1PYQ A;  4CQN A;  3CZB A;  2B25 A;  2DMR A;  2NAP A;  2NVY A;  3FKI A;  4CS0 A;  1WCM A;  2JIO A;  4FIB A;  4AYB A;  5B6C A;  5FTN A;  3GTQ A;  3HKZ A;  3GTO A;  2C45 A;  2A6H D;  2A68 D;  2VUM A;  1G8K A;  1R9T A;  2WAQ A;  4D7Z B;  3LHD A;  1UHD A;  5FTK A;  2NYA A;  1AA6 A;  4GA5 A;  2QQS A;  3ZJT A;  4AZD A;  3LGA A;  2PNW A;  1K83 A;  2V45 A;  1KQG A;  1R7R A;  1H5N A;  1Y1W A;  2QQR A;  4CRY G;  2JIR A;  1E61 A;  5C1B A;  2JIP A;  1Y1V A;  2E2I A;  2WB1 A;  2VPY A;  2JIM A;  1FDI A;  2Q18 X;  2G5D A;  3CF2 A;  2KI8 A;  3TIW A;  3MB5 A;  3GTG A;  1Q16 A;  2V3V A;  2JA6 A;  3FPR A;  1DMR A;  3IR7 A;  1FDO A;  2PJH B;  1E18 A;  2XDP A;  2Q19 X;  3DMR A;  3CQZ A;  2LW6 A;  3GTM A;  2B63 A;  1I50 A;  2YU9 A;  5FTL A;  3QQ8 A;  2Q1C X;  2VPX A;  1WLF A;  2Q1D X;  1PT0 A;  1TWA A;  5DYG A;  2VPZ A;  2R93 A;  3FPT A;  3HU1 A;  2Y0S A;  5D6X A;  1YNN D;  1PQH A;  4DMR A;  1EU1 A;  1QDN A;  3IR6 A;  5CCB A;  1ZC1 A;  5ERG B;  2PMZ A;  1I9G A;  4AS1 A;  3IR5 A;  4ARI A;  1CR5 A;  4RV0 A;  2EEO B;  4QIW A;  4C2M A;  2A6E D;  1Y4Z A;  4KOD A;  2MM0 A;  5FTJ A;  5CCX A;  3TM7 B;  4KO8 A;  4AQ7 A;  3PLX B;  5C18 A;  3HU3 A;  1OGY A;  3H0G A;  3GTL A;  1E32 A;  2GFA A;  4KDL A;  4KLN A;  1PPY A;  5T5M D;  2PIC A;  2BE5 D;  1TWG A;  5EPP A;  1YLE A;  2JA7 A;  2YUJ A;  3QQ7 A;  1Y5I A;  5CD1 A;  1KQF A;  2KY9 A;  3GTP A;  5T5I D;  1H0H A;  1DMS A;  2JA5 A;  1G8J A;  1TWC A;  2IV2 X;  2GAE A;  2GF7 A;  1PT1 A;  1UHE A;  2G6G A;  3QC8 A;  2VPW A;  5GLF A;  4GA6 A;  1SIW A;  3BQB A;  5D6W A;  1IW7 D;  3ZJU A;  3ZGZ A;  5EQJ B;  4ARC A;  5FTM A;  1VC3 B;  2JIQ A;  4AON B;  4AAY A;  3GTJ A;  3QWZ A;  2JV2 A;  2E2H A;  1PQF A;  2R92 A;  1E60 A;  1TMO A;  2Q1A X;  3GTK A;  1R27 A;  1TWH A;  1SMY D;  4AOK B;  1YNJ D;  2PJJ A;  4UC4 A; 
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