The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
26
|
sequence length |
208
|
structure length |
208
|
Chain Sequence |
MFSGFSSFGGGNGFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Ufd1 Exhibits the AAA-ATPase Fold with Two Distinct Ubiquitin Interaction Sites
pubmed doi rcsb |
| molecule keywords |
Ubiquitin fusion degradation protein 1
|
| molecule tags |
Protein turnover
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
26
|
| structure length |
208
|
| sequence length |
208
|
| ec nomenclature | |
| pdb deposition date | 2005-04-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03152 | UFD1 | Ubiquitin fusion degradation protein UFD1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | Barwin-like endoglucanases | ||
| Alpha Beta | Roll | Vcp-like ATPase; Chain A, domain 2 | Vcp-like ATPase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 1E32 A; 3QC8 A; 3HU2 A; 1WLF A; 4KLN A; 3CF2 A; 4KO8 A; 5FTL A; 3QQ7 A; 1CZ5 A; 5DYI A; 4KDL A; 5FTN A; 5GLF A; 1ZC1 A; 1QDN A; 1R7R A; 5EPP A; 1CZ4 A; 5FTM A; 4KDI A; 5DYG A; 2JV2 A; 5C1B A; 5B6C A; 5FTJ A; 1CR5 A; 4RV0 A; 1QCS A; 3HU1 A; 3HU3 A; 5C18 A; 2PJH B; 5FTK A; 1S3S A; 3QQ8 A; 2YUJ A; 3TIW A; 4KOD A; 3QWZ A; #chains in the Genus database with same CATH topology 3QC8 A; 3GTJ A; 2PNW A; 2NYA A; 3X2H A; 4ZM7 A; 4KLN A; 2PMZ A; 1Y1W A; 4AS1 A; 5GLX A; 4DMR A; 4JP6 A; 2WAQ A; 1CZ5 A; 4C2M A; 3SUJ A; 1I9G A; 2KY9 A; 1PYU B; 2PJJ A; 4AOK B; 3FPR A; 1QDN A; 1OA7 A; 1R7R A; 1SMY D; 1R27 A; 4ENG A; 1E60 A; 1KQG A; 4JS7 A; 4KDI A; 4JJO A; 3PLX B; 1H5N A; 2AE0 X; 3OUG A; 3BQB A; 3ZJV A; 2NVY A; 4CRZ A; 2GF7 A; 1CR5 A; 2Q19 X; 4FG2 A; 1TWG A; 2PI8 A; 2Y0S A; 2B25 A; 1I50 A; 3GTK A; 3HU3 A; 2YU9 A; 5EQJ B; 1K83 A; 2JA7 A; 1S3S A; 2A69 D; 3GTO A; 1VC3 B; 3IR6 A; 2WB1 A; 1PQH A; 1E18 A; 2JIQ A; 5GM9 A; 3TIW A; 3X2K A; 2MM0 A; 3TM7 B; 3HU2 A; 2E2I A; 1ZYR D; 2VPY A; 4ARC A; 3CF2 A; 4KO8 A; 3QQ7 A; 2E2H A; 5DYI A; 1L8F A; 4KDL A; 3X2P A; 1BW4 A; 3X2J A; 4FER A; 2XDP A; 3GTM A; 5EPP A; 2KQA A; 1N10 A; 1H0H A; 2MM2 A; 5DYG A; 2A6E D; 4AQ7 A; 4GA6 A; 5C1B A; 5B6C A; 3GTL A; 1G8K A; 2DMR A; 2IV2 X; 1YNN D; 5CCB A; 1YLE A; 4RV0 A; 3FPT A; 4CQN A; 4D7Z B; 1HD5 A; 2JA5 A; 3X2L A; 5GLY A; 4AON B; 1G8J A; 1UHE A; 2JIO A; 3CQZ A; 1YNJ D; 4NOH A; 4UC4 A; 3X2M A; 4FIB A; 4JCW A; 3ZJU A; 3QQ8 A; 3X2G A; 3ZJT A; 2Q18 X; 2BH0 A; 4KOD A; 2QQS A; 2B63 A; 1E32 A; 2JIR A; 1WLF A; 1SIW A; 1TWF A; 1PQE A; 3M3G A; 3X2N A; 4AVR A; 2JA6 A; 5FTL A; 4ARI A; 2Q1C X; 3FPU A; 3GTQ A; 1ZC1 A; 2C45 A; 1WC2 A; 2VPX A; 5CCX A; 1TWC A; 3MB5 A; 1EU1 A; 5FTM A; 2GAE A; 2CW0 D; 3H0G A; 4L48 A; 2JV2 A; 2E7Z A; 1PPY A; 1PYQ A; 2R92 A; 2O5J D; 3FKI A; 3CZB A; 1BW3 A; 5T5M D; 2PWY A; 1TWA A; 2A6H D; 1TWH A; 1Y1V A; 2A68 D; 1WCM A; 2VPW A; 4AAY A; 2G6G A; 1FDI A; 1QCS A; 1Y5I A; 2KI8 A; 3HU1 A; 4FFT A; 2PJH B; 2R93 A; 3LGA A; 1DMR A; 5CD1 A; 2Q1A X; 2Q1D X; 4AZD A; 1E5V A; 4QIW A; 3X2O A; 1AA6 A; 2YVL A; 1AW8 B; 5ERG B; 2V45 A; 2V3V A; 3ML1 A; 4AYB A; 1FDO A; 3QWZ A; 3HKZ A; 3O5A A; 4GA5 A; 2JIM A; 4FG4 A; 1OA9 A; 3ENG A; 5FTN A; 5GLF A; 5D6W A; 1OGY A; 3IR7 A; 1KQF A; 2VPZ A; 3LHD A; 3DMR A; 5D6Y A; 1CZ4 A; 2G5D A; 1SFO A; 2NAP A; 3D30 A; 4CS0 A; 3ZGZ A; 4CRY G; 5D6X A; 2NVX A; 1PT1 A; 2PIC A; 2BE5 D; 5FTJ A; 1PQF A; 3IR5 A; 3X2I A; 3GTG A; 1Q16 A; 5H4U A; 3SUK A; 1TMO A; 5T5I D; 2HCZ X; 3SUM A; 1E61 A; 1DMS A; 1O54 A; 5C18 A; 2JIP A; 3GTP A; 1I3Q A; 5FTK A; 2LW6 A; 2EEO B; 2VUM A; 1PT0 A; 2GFA A; 1Y4Z A; 2YUJ A; 2ENG A; 3SUL A; 1R9T A; 2R7Z A; 1UHD A; 1IW7 D; 4JP7 A; 2QQR A; #chains in the Genus database with same CATH homology 3QC8 A; 3GTJ A; 2PNW A; 2NYA A; 4AS1 A; 4KLN A; 2PMZ A; 1Y1W A; 4DMR A; 2KY9 A; 2WAQ A; 1CZ5 A; 4C2M A; 1I9G A; 1PYU B; 2PJJ A; 4AOK B; 3FPR A; 1QDN A; 1R7R A; 1R27 A; 1SMY D; 1E60 A; 1KQG A; 4KDI A; 3PLX B; 1H5N A; 2AE0 X; 3OUG A; 3BQB A; 3ZJV A; 2NVY A; 4CRZ A; 2GF7 A; 1CR5 A; 2Q19 X; 1TWG A; 2PI8 A; 2Y0S A; 2B25 A; 1I50 A; 3GTK A; 3HU3 A; 2YU9 A; 5EQJ B; 1K83 A; 2JA7 A; 1S3S A; 2A69 D; 3GTO A; 1VC3 B; 3IR6 A; 2WB1 A; 2JIQ A; 1PQH A; 1E18 A; 3TIW A; 2MM0 A; 3TM7 B; 3HU2 A; 2E2I A; 1ZYR D; 2VPY A; 4ARC A; 3CF2 A; 4KO8 A; 3QQ7 A; 2E2H A; 5DYI A; 4KDL A; 2XDP A; 3GTM A; 5EPP A; 1H0H A; 2MM2 A; 5DYG A; 2A6E D; 4AQ7 A; 4GA6 A; 5C1B A; 5B6C A; 3GTL A; 1G8K A; 2DMR A; 2IV2 X; 1YNN D; 5CCB A; 1YLE A; 4RV0 A; 3FPT A; 4CQN A; 4D7Z B; 2JA5 A; 4AON B; 1G8J A; 1UHE A; 2JIO A; 3CQZ A; 1YNJ D; 4NOH A; 4UC4 A; 4FIB A; 3ZJU A; 3ZJT A; 3QQ8 A; 2Q18 X; 4KOD A; 2QQS A; 2B63 A; 1E32 A; 2JIR A; 1WLF A; 1SIW A; 1TWF A; 1PQE A; 2JA6 A; 5FTL A; 4ARI A; 2Q1C X; 3FPU A; 3GTQ A; 1ZC1 A; 2C45 A; 2VPX A; 5CCX A; 1TWC A; 3MB5 A; 1EU1 A; 5FTM A; 2GAE A; 2CW0 D; 3H0G A; 2JV2 A; 2E7Z A; 1PPY A; 1PYQ A; 2R92 A; 2O5J D; 3FKI A; 3CZB A; 5T5M D; 2PWY A; 1TWA A; 2A68 D; 1TWH A; 1Y1V A; 2A6H D; 1WCM A; 2VPW A; 4AAY A; 2G6G A; 1FDI A; 1QCS A; 1Y5I A; 2KI8 A; 3HU1 A; 2R93 A; 2PJH B; 3LGA A; 1DMR A; 5CD1 A; 2Q1A X; 2Q1D X; 1E5V A; 4QIW A; 1AA6 A; 2YVL A; 1AW8 B; 5ERG B; 2V45 A; 2V3V A; 3ML1 A; 4AYB A; 1FDO A; 3QWZ A; 3HKZ A; 3O5A A; 4GA5 A; 2JIM A; 5FTN A; 5GLF A; 5D6W A; 1OGY A; 3IR7 A; 1KQF A; 2VPZ A; 3LHD A; 3DMR A; 5D6Y A; 1CZ4 A; 2G5D A; 1SFO A; 2NAP A; 3ZGZ A; 4CS0 A; 4CRY G; 5D6X A; 2NVX A; 1PT1 A; 2PIC A; 2BE5 D; 5FTJ A; 1PQF A; 3IR5 A; 3GTG A; 1Q16 A; 1TMO A; 5T5I D; 1E61 A; 1DMS A; 1O54 A; 5C18 A; 2JIP A; 3GTP A; 1I3Q A; 5FTK A; 2LW6 A; 2EEO B; 2VUM A; 1PT0 A; 2GFA A; 1Y4Z A; 2YUJ A; 2R7Z A; 1R9T A; 1UHD A; 1IW7 D; 4AZD A; 2QQR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
