2J5TA

Glutamate 5-kinase from escherichia coli complexed with glutamate
Total Genus 115
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
365
structure length
355
Chain Sequence
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (162-165)S1 (6-11)AH1 (13-17)TI'1 (17-20)AH3 (52-60)AH2 (25-41)S7 (230-235)S2 (44-49)AH4 (69-94)O1 (66-68)S3 (97-103)TIV3 (141-144)AH5 (111-126)AH6 (149-160)S4 (129-135)TI2 (142-145)TI1 (136-139)TIV2 (137-140)S5 (164-169)TI5 (182-185)TIV5 (175-178)TI3 (178-181)TI4 (179-182)3H2 (194-196)TIV7 (196-199)AH7 (214-227)AH11 (344-350)S8 (253-255)TVIII1 (258-261)S10 (300-304)S9 (276-280)3H4 (297-299)TII2 (308-311)S11 (311-317)TI7 (317-320)AH10 (332-338)S12 (321-328)TII3 (338-341)3H1 (105-108)S6 (190-191)TIV6 (191-194)TI6 (235-238)AH9 (282-291)AH8 (241-247)3H3 (264-271)Updating...
connected with : NaN
molecule tags Transferase
source organism Escherichia coli
publication title A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
pubmed doi rcsb
molecule keywords GLUTAMATE 5-KINASE
total genus 115
structure length 355
sequence length 365
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2006-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 2j5tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j5tA01
4F6TA 3T7BA 1WXXA 1ZS7A 2E9YA 3QUOA 2WE4A 3C1NA 2B78A 2JJ4A 3S6GA 4JZ8A 3C1MA 4JZ9A 3K52A 2OGXB 4I49A 2CX1A 4NDPB 3D2MA 2W21A 3ZZFA 3EK6A 2AKOA 4AB7A 2BNFA 3TVIA 2BNDA 2Q07A 3B8GA 1K8WA 3EK5A 3K4YA 2JJXA 2RD5A 1Q7HA 3UAIA 4AXSA 2HMFA 3D40A 4KZTA 3C20A 4DMGA 1OH9A 2VA1A 3LL9A 4NDRA 1R3FA 1IT7A 3KZFA 1GS5A 2CDQA 2BRXA 3WWMA 2A1FA 2IJ9A 2R98A 4OLCA 3LKKA 3QURA 3U6UA 2BMUA 2J5TA 4NDOA 3S6KA 3AAWA 2WE5A 1ZE1A 2R8VA 3L86A 3NWYA 4NDQB 3AB2A 1SGVA 2AS0A 2J4JA 3WWNA 1R3EA 1GSJA 3D79A 3AB4A 2OGXA 3ZZHA 4NDPA 3LL5A 4USJA 3L76A 2BNEA 3D2PA 2J0WA 4F6TB 2AB4A 1WXWA 1J2BA 1IT8A 2J4KA 4NDRB 2AP9A 3K56A 3ZZGA 3K4OA 3VSEA 4A7WA 1Z9DA 2BTYA 2J5VA 4A7XA 1IQ8A 4Q1TA 3C0KA 4NDOB 3LDFA 1OHAA 2V4YA 1OHBA 1YBDA 3S6HA 2J0XA 2BUFA 4NDQA 2V5HA 1B7BA 3QVHA 3D41A 1T5YA 1ZE2A 3QVFA 2WXBA 3ZZIA 2CWWA 2X2WA 2CX0A 1ZL3A 2P38A 2J4LA 1E19A 2BRIA 1SQWA 3QUNA 2JI5A 4JZ7A
chains in the Genus database with same CATH superfamily
4F6TA 2HVYA 3T7BA 1WXXA 1ZS7A 2E9YA 3M6VA 3QUOA 2AUSA 2WE4A 3C1NA 2B78A 2RFKA 1XNEA 2JJ4A 3S6GA 4JZ8A 3C1MA 2FRXA 4JZ9A 3K52A 2OGXB 4I49A 2CX1A 4NDPB 3D2MA 2W21A 3ZZFA 3EK6A 2AKOA 3LWPA 4AB7A 2BNFA 3TVIA 3HJWA 4CI2B 2BNDA 2Q07A 3B8GA 1K8WA 3EK5A 3K4YA 2JJXA 2RD5A 1Q7HA 3UAIA 4AXSA 2HMFA 3D40A 4KZTA 3C20A 4DMGA 1OH9A 2VA1A 3LL9A 4NDRA 2KKUA 1R3FA 1IT7A 3LJCA 2Z0TA 3KZFA 1GS5A 2CDQA 2BRXA 3WWMA 3M65A 2A1FA 2IJ9A 2R98A 3U28A 4OLCA 3LKKA 3QURA 3U6UA 2BMUA 3LWOA 2J5TA 4NDOA 3S6KA 4CI1B 3AAWA 2ANEA 1ZE1A 3IUWA 2R8VA 2WE5A 3L86A 3NWYA 4NDQB 3AB2A 1SGVA 2AS0A 2J4JA 3WWNA 3M6UA 1R3EA 1GSJA 3D79A 3AB4A 2OGXA 3ZZHA 4NDPA 3LL5A 4USJA 3L76A 2E5OA 3HAXA 2BNEA 3D2PA 2J0WA 4F6TB 2AB4A 1WXWA 1J2BA 1IT8A 2J4KA 4NDRB 1ZBOA 3M6XA 2AP9A 3K56A 3ZZGA 3K4OA 3VSEA 4A7WA 1WK2A 1Z9DA 2BTYA 2J5VA 1S04A 1TE7A 4CI3B 4A7XA 1IQ8A 4Q1TA 3LWRA 3C0KA 4NDOB 3HJYA 3LDFA 1OHAA 1UOYA 3MQKA 3ZV0C 4TZ4C 2V4YA 1OHBA 1YBDA 2DP9A 3S6HA 2J0XA 2APOA 2BUFA 4NDQA 2V5HA 1B7BA 3QVHA 3D41A 1T5YA 1ZE2A 3QVFA 3M4XA 2WXBA 3LWVA 3ZZIA 2CWWA 2X2WA 2CX0A 1ZL3A 2EY4A 2P38A 2J4LA 3M6WA 1E19A 2BRIA 1SQWA 3LWQA 3QUNA 2JI5A 4JZ7A
chains in the Genus database with same CATH topology
4F6TA 3T7BA 1WXXA 1ZS7A 2E9YA 3QUOA 2WE4A 3C1NA 2B78A 2JJ4A 3S6GA 4JZ8A 3C1MA 4JZ9A 3K52A 2OGXB 4I49A 2CX1A 4NDPB 3D2MA 2W21A 3ZZFA 3EK6A 2AKOA 4AB7A 2BNFA 3TVIA 2BNDA 2Q07A 3B8GA 1K8WA 3EK5A 3K4YA 2JJXA 2RD5A 1Q7HA 3UAIA 4AXSA 2HMFA 3D40A 4KZTA 3C20A 4DMGA 1OH9A 2VA1A 3LL9A 4NDRA 1R3FA 1IT7A 3KZFA 1GS5A 2CDQA 2BRXA 3WWMA 2A1FA 2IJ9A 2R98A 4OLCA 3LKKA 3QURA 3U6UA 2BMUA 2J5TA 4NDOA 3S6KA 3AAWA 2WE5A 1ZE1A 2R8VA 3L86A 3NWYA 4NDQB 3AB2A 1SGVA 2AS0A 2J4JA 3WWNA 1R3EA 1GSJA 3D79A 3AB4A 2OGXA 3ZZHA 4NDPA 3LL5A 4USJA 3L76A 2BNEA 3D2PA 2J0WA 4F6TB 2AB4A 1WXWA 1J2BA 1IT8A 2J4KA 4NDRB 2AP9A 3K56A 3ZZGA 3K4OA 3VSEA 4A7WA 1Z9DA 2BTYA 2J5VA 4A7XA 1IQ8A 4Q1TA 3C0KA 4NDOB 3LDFA 1OHAA 2V4YA 1OHBA 1YBDA 3S6HA 2J0XA 2BUFA 4NDQA 2V5HA 1B7BA 3QVHA 3D41A 1T5YA 1ZE2A 3QVFA 2WXBA 3ZZIA 2CWWA 2X2WA 2CX0A 1ZL3A 2P38A 2J4LA 1E19A 2BRIA 1SQWA 3QUNA 2JI5A 4JZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F6T A;  3T7B A;  1WXX A;  1ZS7 A;  2E9Y A;  3QUO A;  2WE4 A;  3C1N A;  2B78 A;  2JJ4 A;  3S6G A;  4JZ8 A;  3C1M A;  4JZ9 A;  3K52 A;  2OGX B;  4I49 A;  2CX1 A;  4NDP B;  3D2M A;  2W21 A;  3ZZF A;  3EK6 A;  2AKO A;  4AB7 A;  2BNF A;  3TVI A;  2BND A;  2Q07 A;  3B8G A;  1K8W A;  3EK5 A;  3K4Y A;  2JJX A;  2RD5 A;  1Q7H A;  3UAI A;  4AXS A;  2HMF A;  3D40 A;  4KZT A;  3C20 A;  4DMG A;  1OH9 A;  2VA1 A;  3LL9 A;  4NDR A;  1R3F A;  1IT7 A;  3KZF A;  1GS5 A;  2CDQ A;  2BRX A;  3WWM A;  2A1F A;  2IJ9 A;  2R98 A;  4OLC A;  3LKK A;  3QUR A;  3U6U A;  2BMU A;  2J5T A;  4NDO A;  3S6K A;  3AAW A;  2WE5 A;  1ZE1 A;  2R8V A;  3L86 A;  3NWY A;  4NDQ B;  3AB2 A;  1SGV A;  2AS0 A;  2J4J A;  3WWN A;  1R3E A;  1GSJ A;  3D79 A;  3AB4 A;  2OGX A;  3ZZH A;  4NDP A;  3LL5 A;  4USJ A;  3L76 A;  2BNE A;  3D2P A;  2J0W A;  4F6T B;  2AB4 A;  1WXW A;  1J2B A;  1IT8 A;  2J4K A;  4NDR B;  2AP9 A;  3K56 A;  3ZZG A;  3K4O A;  3VSE A;  4A7W A;  1Z9D A;  2BTY A;  2J5V A;  4A7X A;  1IQ8 A;  4Q1T A;  3C0K A;  4NDO B;  3LDF A;  1OHA A;  2V4Y A;  1OHB A;  1YBD A;  3S6H A;  2J0X A;  2BUF A;  4NDQ A;  2V5H A;  1B7B A;  3QVH A;  3D41 A;  1T5Y A;  1ZE2 A;  3QVF A;  2WXB A;  3ZZI A;  2CWW A;  2X2W A;  2CX0 A;  1ZL3 A;  2P38 A;  2J4L A;  1E19 A;  2BRI A;  1SQW A;  3QUN A;  2JI5 A;  4JZ7 A; 
#chains in the Genus database with same CATH topology
 4F6T A;  2HVY A;  3T7B A;  1WXX A;  1ZS7 A;  2E9Y A;  3M6V A;  3QUO A;  2AUS A;  2WE4 A;  3C1N A;  2B78 A;  2RFK A;  1XNE A;  2JJ4 A;  3S6G A;  4JZ8 A;  3C1M A;  2FRX A;  4JZ9 A;  3K52 A;  2OGX B;  4I49 A;  2CX1 A;  4NDP B;  3D2M A;  2W21 A;  3ZZF A;  3EK6 A;  2AKO A;  3LWP A;  4AB7 A;  2BNF A;  3TVI A;  3HJW A;  4CI2 B;  2BND A;  2Q07 A;  3B8G A;  1K8W A;  3EK5 A;  3K4Y A;  2JJX A;  2RD5 A;  1Q7H A;  3UAI A;  4AXS A;  2HMF A;  3D40 A;  4KZT A;  3C20 A;  4DMG A;  1OH9 A;  2VA1 A;  3LL9 A;  4NDR A;  2KKU A;  1R3F A;  1IT7 A;  3LJC A;  2Z0T A;  3KZF A;  1GS5 A;  2CDQ A;  2BRX A;  3WWM A;  3M65 A;  2A1F A;  2IJ9 A;  2R98 A;  3U28 A;  4OLC A;  3LKK A;  3QUR A;  3U6U A;  2BMU A;  3LWO A;  2J5T A;  4NDO A;  3S6K A;  4CI1 B;  3AAW A;  2ANE A;  1ZE1 A;  3IUW A;  2R8V A;  2WE5 A;  3L86 A;  3NWY A;  4NDQ B;  3AB2 A;  1SGV A;  2AS0 A;  2J4J A;  3WWN A;  3M6U A;  1R3E A;  1GSJ A;  3D79 A;  3AB4 A;  2OGX A;  3ZZH A;  4NDP A;  3LL5 A;  4USJ A;  3L76 A;  2E5O A;  3HAX A;  2BNE A;  3D2P A;  2J0W A;  4F6T B;  2AB4 A;  1WXW A;  1J2B A;  1IT8 A;  2J4K A;  4NDR B;  1ZBO A;  3M6X A;  2AP9 A;  3K56 A;  3ZZG A;  3K4O A;  3VSE A;  4A7W A;  1WK2 A;  1Z9D A;  2BTY A;  2J5V A;  1S04 A;  1TE7 A;  4CI3 B;  4A7X A;  1IQ8 A;  4Q1T A;  3LWR A;  3C0K A;  4NDO B;  3HJY A;  3LDF A;  1OHA A;  1UOY A;  3MQK A;  3ZV0 C;  4TZ4 C;  2V4Y A;  1OHB A;  1YBD A;  2DP9 A;  3S6H A;  2J0X A;  2APO A;  2BUF A;  4NDQ A;  2V5H A;  1B7B A;  3QVH A;  3D41 A;  1T5Y A;  1ZE2 A;  3QVF A;  3M4X A;  2WXB A;  3LWV A;  3ZZI A;  2CWW A;  2X2W A;  2CX0 A;  1ZL3 A;  2EY4 A;  2P38 A;  2J4L A;  3M6W A;  1E19 A;  2BRI A;  1SQW A;  3LWQ A;  3QUN A;  2JI5 A;  4JZ7 A; 
#chains in the Genus database with same CATH homology
 4F6T A;  3T7B A;  1WXX A;  1ZS7 A;  2E9Y A;  3QUO A;  2WE4 A;  3C1N A;  2B78 A;  2JJ4 A;  3S6G A;  4JZ8 A;  3C1M A;  4JZ9 A;  3K52 A;  2OGX B;  4I49 A;  2CX1 A;  4NDP B;  3D2M A;  2W21 A;  3ZZF A;  3EK6 A;  2AKO A;  4AB7 A;  2BNF A;  3TVI A;  2BND A;  2Q07 A;  3B8G A;  1K8W A;  3EK5 A;  3K4Y A;  2JJX A;  2RD5 A;  1Q7H A;  3UAI A;  4AXS A;  2HMF A;  3D40 A;  4KZT A;  3C20 A;  4DMG A;  1OH9 A;  2VA1 A;  3LL9 A;  4NDR A;  1R3F A;  1IT7 A;  3KZF A;  1GS5 A;  2CDQ A;  2BRX A;  3WWM A;  2A1F A;  2IJ9 A;  2R98 A;  4OLC A;  3LKK A;  3QUR A;  3U6U A;  2BMU A;  2J5T A;  4NDO A;  3S6K A;  3AAW A;  2WE5 A;  1ZE1 A;  2R8V A;  3L86 A;  3NWY A;  4NDQ B;  3AB2 A;  1SGV A;  2AS0 A;  2J4J A;  3WWN A;  1R3E A;  1GSJ A;  3D79 A;  3AB4 A;  2OGX A;  3ZZH A;  4NDP A;  3LL5 A;  4USJ A;  3L76 A;  2BNE A;  3D2P A;  2J0W A;  4F6T B;  2AB4 A;  1WXW A;  1J2B A;  1IT8 A;  2J4K A;  4NDR B;  2AP9 A;  3K56 A;  3ZZG A;  3K4O A;  3VSE A;  4A7W A;  1Z9D A;  2BTY A;  2J5V A;  4A7X A;  1IQ8 A;  4Q1T A;  3C0K A;  4NDO B;  3LDF A;  1OHA A;  2V4Y A;  1OHB A;  1YBD A;  3S6H A;  2J0X A;  2BUF A;  4NDQ A;  2V5H A;  1B7B A;  3QVH A;  3D41 A;  1T5Y A;  1ZE2 A;  3QVF A;  2WXB A;  3ZZI A;  2CWW A;  2X2W A;  2CX0 A;  1ZL3 A;  2P38 A;  2J4L A;  1E19 A;  2BRI A;  1SQW A;  3QUN A;  2JI5 A;  4JZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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