2YUJA

Solution structure of human ubiquitin fusion degradation protein 1 homolog ufd1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
190
structure length
190
Chain Sequence
GSSGSSGIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Ubiquitin fusion degradation 1-like
total genus 25
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2007-04-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.50 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2yujA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2yujA02
5C18A 5EPPA 3CF2A 5DYIA 1S3SA 3HU1A 5FTKA 2JV2A 3TIWA 5DYGA 2YUJA 1ZC1A 1E32A 1QCSA 4KLNA 2PJHB 1WLFA 1CZ5A 4KO8A 3QWZA 4RV0A 5FTNA 5C1BA 3QQ8A 5FTMA 5FTJA 5GLFA 5FTLA 1R7RA 1CZ4A 1QDNA 4KODA 3HU2A 4KDLA 5B6CA 3HU3A 3QQ7A 1CR5A 3QC8A 4KDIA
chains in the Genus database with same CATH superfamily
3MB5A 1FDOA 4JCWA 4AZDA 1PQEA 2VPXA 2E2IA 1Y1WA 1SIWA 1SMYD 1PT0A 3ML1A 5CCXA 3GTPA 1N10A 3TIWA 1AW8B 2C45A 2A69D 5DYGA 1R27A 4FERA 1G8KA 4AAYA 5EQJB 5CCBA 3LHDA 1OA9A 2YU9A 3ZJVA 2AE0X 3ENGA 3SUJA 4ZM7A 1Y4ZA 2A68D 2KI8A 4AQ7A 2PJHB 2LW6A 4AOKB 5ERGB 1PPYA 4RV0A 5FTNA 2NAPA 1YLEA 4CRZA 4FIBA 5FTJA 4ARIA 2JIQA 1PQFA 4KODA 3GTKA 2MM2A 2Q18X 3GTLA 2JA7A 2PWYA 1I9GA 1UHDA 3FPUA 3QC8A 3GTOA 1WC2A 5C18A 3GTQA 4D7ZB 2V3VA 1OGYA 4CS0A 2R92A 2Q19X 4AYBA 1WCMA 3X2NA 2R7ZA 2B25A 2Q1DX 2JV2A 3M3GA 1E5VA 1PQHA 2KY9A 4GA5A 1PYUB 3X2HA 1EU1A 2BE5D 2B63A 2JA6A 2VPWA 4FG4A 2MM0A 3BQBA 2VUMA 4JP6A 1WLFA 4UC4A 2BH0A 1TWCA 3IR7A 2R93A 2JA5A 4L48A 1KQFA 5FTMA 1CZ4A 1KQGA 3H0GA 5D6YA 3HU2A 3IR6A 4KDLA 1IW7D 1Q16A 3TM7B 5T5ID 3HU3A 3PLXB 4CQNA 2HCZX 3IR5A 1TWGA 4JP7A 3D30A 1Y1VA 1I3QA 3GTJA 4KDIA 1O54A 3FPTA 1TWHA 3X2IA 2YVLA 4AS1A 5EPPA 3ZJTA 3ZGZA 1FDIA 3OUGA 5GM9A 5DYIA 3X2PA 1ZYRD 2JIRA 3FPRA 4JJOA 1S3SA 2ENGA 1R9TA 2JIOA 1H0HA 3HU1A 2GFAA 2NVXA 5GLXA 3DMRA 1K83A 1E32A 2PNWA 2Y0SA 4FFTA 5H4UA 3GTMA 1G8JA 4DMRA 3SUMA 1L8FA 4ENGA 4GA6A 4KO8A 3X2GA 2CW0D 3HKZA 2QQRA 1YNJD 1VC3B 3X2KA 4CRYG 2Q1AX 1R7RA 2Q1CX 3ZJUA 3FKIA 5CD1A 1I50A 4JS7A 2E7ZA 1DMSA 1TMOA 2NVYA 3X2MA 5D6WA 1CR5A 1PYQA 2PICA 4AONB 5D6XA 1TWFA 2VPYA 3CF2A 2KQAA 2WB1A 5T5MD 1YNND 1HD5A 1OA7A 5GLYA 1BW4A 1E18A 2NYAA 5FTKA 4AVRA 2YUJA 1ZC1A 2E2HA 2IV2X 2WAQA 1QCSA 1AA6A 2DMRA 3X2JA 1Y5IA 4C2MA 1SFOA 3SULA 1UHEA 1PT1A 2PJJA 1DMRA 2G6GA 3X2LA 2GF7A 2QQSA 4KLNA 3X2OA 1BW3A 2V45A 1CZ5A 2EEOB 3CZBA 3CQZA 3QWZA 3SUKA 2G5DA 4NOHA 3O5AA 2JIPA 5C1BA 3QQ8A 3GTGA 5GLFA 2PMZA 2VPZA 5FTLA 1QDNA 2PI8A 2XDPA 4ARCA 1E61A 2A6ED 2GAEA 4FG2A 1TWAA 5B6CA 2O5JD 3LGAA 3QQ7A 2JIMA 4QIWA 1H5NA 1E60A 2A6HD
chains in the Genus database with same CATH topology
3MB5A 1FDOA 4AZDA 1PQEA 2VPXA 2E2IA 1Y1WA 1SIWA 1SMYD 1PT0A 3ML1A 5CCXA 3GTPA 3TIWA 1AW8B 2C45A 2A69D 5DYGA 1R27A 1G8KA 4AAYA 5EQJB 5CCBA 3LHDA 2YU9A 3ZJVA 2AE0X 1Y4ZA 2A68D 2KI8A 4AQ7A 2PJHB 2LW6A 4AOKB 5ERGB 1PPYA 4RV0A 5FTNA 2NAPA 1YLEA 4CRZA 4FIBA 5FTJA 4ARIA 2JIQA 1PQFA 4KODA 3GTKA 2MM2A 2Q18X 3GTLA 2JA7A 2PWYA 1I9GA 1UHDA 3FPUA 3QC8A 3GTOA 5C18A 3GTQA 4D7ZB 2V3VA 1OGYA 4CS0A 2R92A 2Q19X 4AYBA 1WCMA 2R7ZA 2B25A 2Q1DX 2JV2A 1E5VA 1PQHA 2KY9A 4GA5A 1PYUB 1EU1A 2BE5D 2B63A 2JA6A 2VPWA 2MM0A 3BQBA 2VUMA 1WLFA 4UC4A 1TWCA 3IR7A 2R93A 2JA5A 1KQFA 5FTMA 1CZ4A 1KQGA 3H0GA 5D6YA 3HU2A 3IR6A 4KDLA 1IW7D 1Q16A 3TM7B 5T5ID 3HU3A 3PLXB 4CQNA 3IR5A 1TWGA 1I3QA 3GTJA 1Y1VA 1O54A 3FPTA 4KDIA 1TWHA 2YVLA 4AS1A 3ZGZA 5EPPA 3ZJTA 1FDIA 3OUGA 5DYIA 3ZJUA 1ZYRD 2JIRA 3FPRA 1S3SA 1R9TA 2GFAA 2JIOA 1H0HA 3HU1A 2NVXA 1K83A 3DMRA 1E32A 2PNWA 2Y0SA 3GTMA 1G8JA 4DMRA 4GA6A 4KO8A 2CW0D 3HKZA 2QQRA 1YNJD 1VC3B 2Q1AX 4CRYG 1R7RA 2Q1CX 3FKIA 5CD1A 1I50A 2E7ZA 1DMSA 1TMOA 2NVYA 5D6WA 1CR5A 2PICA 1PYQA 4AONB 5D6XA 1TWFA 2VPYA 3CF2A 2WB1A 5T5MD 1YNND 1E18A 2NYAA 5FTKA 2YUJA 1ZC1A 2E2HA 2IV2X 2WAQA 1QCSA 1AA6A 2DMRA 1Y5IA 4C2MA 1SFOA 1UHEA 1PT1A 2PJJA 1DMRA 2G6GA 2GF7A 2QQSA 4KLNA 2V45A 1CZ5A 2EEOB 3CZBA 3CQZA 3QWZA 2G5DA 4NOHA 3O5AA 2JIPA 5C1BA 3QQ8A 3GTGA 5GLFA 2PMZA 2VPZA 5FTLA 1QDNA 2PI8A 2XDPA 4ARCA 1E61A 2A6ED 2GAEA 5B6CA 1TWAA 2O5JD 3LGAA 3QQ7A 2JIMA 4QIWA 1H5NA 1E60A 2A6HD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C18 A;  5EPP A;  3CF2 A;  5DYI A;  1S3S A;  3HU1 A;  5FTK A;  2JV2 A;  3TIW A;  5DYG A;  2YUJ A;  1ZC1 A;  1E32 A;  1QCS A;  4KLN A;  2PJH B;  1WLF A;  1CZ5 A;  4KO8 A;  3QWZ A;  4RV0 A;  5FTN A;  5C1B A;  3QQ8 A;  5FTM A;  5FTJ A;  5GLF A;  5FTL A;  1R7R A;  1CZ4 A;  1QDN A;  4KOD A;  3HU2 A;  4KDL A;  5B6C A;  3HU3 A;  3QQ7 A;  1CR5 A;  3QC8 A;  4KDI A; 
#chains in the Genus database with same CATH topology
 3MB5 A;  1FDO A;  4JCW A;  4AZD A;  1PQE A;  2VPX A;  2E2I A;  1Y1W A;  1SIW A;  1SMY D;  1PT0 A;  3ML1 A;  5CCX A;  3GTP A;  1N10 A;  3TIW A;  1AW8 B;  2C45 A;  2A69 D;  5DYG A;  1R27 A;  4FER A;  1G8K A;  4AAY A;  5EQJ B;  5CCB A;  3LHD A;  1OA9 A;  2YU9 A;  3ZJV A;  2AE0 X;  3ENG A;  3SUJ A;  4ZM7 A;  1Y4Z A;  2A68 D;  2KI8 A;  4AQ7 A;  2PJH B;  2LW6 A;  4AOK B;  5ERG B;  1PPY A;  4RV0 A;  5FTN A;  2NAP A;  1YLE A;  4CRZ A;  4FIB A;  5FTJ A;  4ARI A;  2JIQ A;  1PQF A;  4KOD A;  3GTK A;  2MM2 A;  2Q18 X;  3GTL A;  2JA7 A;  2PWY A;  1I9G A;  1UHD A;  3FPU A;  3QC8 A;  3GTO A;  1WC2 A;  5C18 A;  3GTQ A;  4D7Z B;  2V3V A;  1OGY A;  4CS0 A;  2R92 A;  2Q19 X;  4AYB A;  1WCM A;  3X2N A;  2R7Z A;  2B25 A;  2Q1D X;  2JV2 A;  3M3G A;  1E5V A;  1PQH A;  2KY9 A;  4GA5 A;  1PYU B;  3X2H A;  1EU1 A;  2BE5 D;  2B63 A;  2JA6 A;  2VPW A;  4FG4 A;  2MM0 A;  3BQB A;  2VUM A;  4JP6 A;  1WLF A;  4UC4 A;  2BH0 A;  1TWC A;  3IR7 A;  2R93 A;  2JA5 A;  4L48 A;  1KQF A;  5FTM A;  1CZ4 A;  1KQG A;  3H0G A;  5D6Y A;  3HU2 A;  3IR6 A;  4KDL A;  1IW7 D;  1Q16 A;  3TM7 B;  5T5I D;  3HU3 A;  3PLX B;  4CQN A;  2HCZ X;  3IR5 A;  1TWG A;  4JP7 A;  3D30 A;  1Y1V A;  1I3Q A;  3GTJ A;  4KDI A;  1O54 A;  3FPT A;  1TWH A;  3X2I A;  2YVL A;  4AS1 A;  5EPP A;  3ZJT A;  3ZGZ A;  1FDI A;  3OUG A;  5GM9 A;  5DYI A;  3X2P A;  1ZYR D;  2JIR A;  3FPR A;  4JJO A;  1S3S A;  2ENG A;  1R9T A;  2JIO A;  1H0H A;  3HU1 A;  2GFA A;  2NVX A;  5GLX A;  3DMR A;  1K83 A;  1E32 A;  2PNW A;  2Y0S A;  4FFT A;  5H4U A;  3GTM A;  1G8J A;  4DMR A;  3SUM A;  1L8F A;  4ENG A;  4GA6 A;  4KO8 A;  3X2G A;  2CW0 D;  3HKZ A;  2QQR A;  1YNJ D;  1VC3 B;  3X2K A;  4CRY G;  2Q1A X;  1R7R A;  2Q1C X;  3ZJU A;  3FKI A;  5CD1 A;  1I50 A;  4JS7 A;  2E7Z A;  1DMS A;  1TMO A;  2NVY A;  3X2M A;  5D6W A;  1CR5 A;  1PYQ A;  2PIC A;  4AON B;  5D6X A;  1TWF A;  2VPY A;  3CF2 A;  2KQA A;  2WB1 A;  5T5M D;  1YNN D;  1HD5 A;  1OA7 A;  5GLY A;  1BW4 A;  1E18 A;  2NYA A;  5FTK A;  4AVR A;  2YUJ A;  1ZC1 A;  2E2H A;  2IV2 X;  2WAQ A;  1QCS A;  1AA6 A;  2DMR A;  3X2J A;  1Y5I A;  4C2M A;  1SFO A;  3SUL A;  1UHE A;  1PT1 A;  2PJJ A;  1DMR A;  2G6G A;  3X2L A;  2GF7 A;  2QQS A;  4KLN A;  3X2O A;  1BW3 A;  2V45 A;  1CZ5 A;  2EEO B;  3CZB A;  3CQZ A;  3QWZ A;  3SUK A;  2G5D A;  4NOH A;  3O5A A;  2JIP A;  5C1B A;  3QQ8 A;  3GTG A;  5GLF A;  2PMZ A;  2VPZ A;  5FTL A;  1QDN A;  2PI8 A;  2XDP A;  4ARC A;  1E61 A;  2A6E D;  2GAE A;  4FG2 A;  1TWA A;  5B6C A;  2O5J D;  3LGA A;  3QQ7 A;  2JIM A;  4QIW A;  1H5N A;  1E60 A;  2A6H D; 
#chains in the Genus database with same CATH homology
 3MB5 A;  1FDO A;  4AZD A;  1PQE A;  2VPX A;  2E2I A;  1Y1W A;  1SIW A;  1SMY D;  1PT0 A;  3ML1 A;  5CCX A;  3GTP A;  3TIW A;  1AW8 B;  2C45 A;  2A69 D;  5DYG A;  1R27 A;  1G8K A;  4AAY A;  5EQJ B;  5CCB A;  3LHD A;  2YU9 A;  3ZJV A;  2AE0 X;  1Y4Z A;  2A68 D;  2KI8 A;  4AQ7 A;  2PJH B;  2LW6 A;  4AOK B;  5ERG B;  1PPY A;  4RV0 A;  5FTN A;  2NAP A;  1YLE A;  4CRZ A;  4FIB A;  5FTJ A;  4ARI A;  2JIQ A;  1PQF A;  4KOD A;  3GTK A;  2MM2 A;  2Q18 X;  3GTL A;  2JA7 A;  2PWY A;  1I9G A;  1UHD A;  3FPU A;  3QC8 A;  3GTO A;  5C18 A;  3GTQ A;  4D7Z B;  2V3V A;  1OGY A;  4CS0 A;  2R92 A;  2Q19 X;  4AYB A;  1WCM A;  2R7Z A;  2B25 A;  2Q1D X;  2JV2 A;  1E5V A;  1PQH A;  2KY9 A;  4GA5 A;  1PYU B;  1EU1 A;  2BE5 D;  2B63 A;  2JA6 A;  2VPW A;  2MM0 A;  3BQB A;  2VUM A;  1WLF A;  4UC4 A;  1TWC A;  3IR7 A;  2R93 A;  2JA5 A;  1KQF A;  5FTM A;  1CZ4 A;  1KQG A;  3H0G A;  5D6Y A;  3HU2 A;  3IR6 A;  4KDL A;  1IW7 D;  1Q16 A;  3TM7 B;  5T5I D;  3HU3 A;  3PLX B;  4CQN A;  3IR5 A;  1TWG A;  1I3Q A;  3GTJ A;  1Y1V A;  1O54 A;  3FPT A;  4KDI A;  1TWH A;  2YVL A;  4AS1 A;  3ZGZ A;  5EPP A;  3ZJT A;  1FDI A;  3OUG A;  5DYI A;  3ZJU A;  1ZYR D;  2JIR A;  3FPR A;  1S3S A;  1R9T A;  2GFA A;  2JIO A;  1H0H A;  3HU1 A;  2NVX A;  1K83 A;  3DMR A;  1E32 A;  2PNW A;  2Y0S A;  3GTM A;  1G8J A;  4DMR A;  4GA6 A;  4KO8 A;  2CW0 D;  3HKZ A;  2QQR A;  1YNJ D;  1VC3 B;  2Q1A X;  4CRY G;  1R7R A;  2Q1C X;  3FKI A;  5CD1 A;  1I50 A;  2E7Z A;  1DMS A;  1TMO A;  2NVY A;  5D6W A;  1CR5 A;  2PIC A;  1PYQ A;  4AON B;  5D6X A;  1TWF A;  2VPY A;  3CF2 A;  2WB1 A;  5T5M D;  1YNN D;  1E18 A;  2NYA A;  5FTK A;  2YUJ A;  1ZC1 A;  2E2H A;  2IV2 X;  2WAQ A;  1QCS A;  1AA6 A;  2DMR A;  1Y5I A;  4C2M A;  1SFO A;  1UHE A;  1PT1 A;  2PJJ A;  1DMR A;  2G6G A;  2GF7 A;  2QQS A;  4KLN A;  2V45 A;  1CZ5 A;  2EEO B;  3CZB A;  3CQZ A;  3QWZ A;  2G5D A;  4NOH A;  3O5A A;  2JIP A;  5C1B A;  3QQ8 A;  3GTG A;  5GLF A;  2PMZ A;  2VPZ A;  5FTL A;  1QDN A;  2PI8 A;  2XDP A;  4ARC A;  1E61 A;  2A6E D;  2GAE A;  5B6C A;  1TWA A;  2O5J D;  3LGA A;  3QQ7 A;  2JIM A;  4QIW A;  1H5N A;  1E60 A;  2A6H D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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