2YUJA

Solution structure of human ubiquitin fusion degradation protein 1 homolog ufd1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
190
structure length
190
Chain Sequence
GSSGSSGIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Ubiquitin fusion degradation 1-like
total genus 25
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2007-04-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.50 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2yujA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2yujA02
3QWZA 5FTMA 5FTKA 1CZ4A 5DYIA 2PJHB 4KDIA 5DYGA 5EPPA 4KO8A 3TIWA 3QQ7A 5C18A 1WLFA 1S3SA 2JV2A 5GLFA 3HU2A 3QC8A 1QDNA 4KDLA 3QQ8A 1E32A 3HU3A 1ZC1A 4RV0A 3HU1A 4KLNA 5FTLA 5FTNA 1CZ5A 5C1BA 5FTJA 3CF2A 5B6CA 2YUJA 1QCSA 1R7RA 4KODA 1CR5A
chains in the Genus database with same CATH superfamily
5GM9A 4GA5A 3GTJA 3IR7A 4ENGA 3ENGA 5H4UA 1HD5A 4FIBA 5FTKA 3IR6A 5GLXA 1E61A 3X2HA 5ERGB 1TWGA 5CD1A 3ZGZA 2WAQA 1L8FA 3FPRA 4CRZA 3ML1A 2GF7A 4FG4A 4NOHA 3TIWA 1E5VA 1WLFA 2PNWA 2JA5A 1YNND 5GLYA 3D30A 4JS7A 3HU2A 5D6XA 4CQNA 1EU1A 5D6WA 2JIRA 4RV0A 4KLNA 3LGAA 1UHEA 3X2IA 1SFOA 2E7ZA 4FG2A 1E60A 5FTNA 1OGYA 3IR5A 3FPTA 4D7ZB 3H0GA 2BH0A 2VPXA 1I3QA 2JA7A 1TWFA 3CF2A 2GAEA 5B6CA 2E2IA 1Y1WA 2Q1CX 2PMZA 1Y4ZA 1G8JA 4KODA 1PYQA 2NVYA 2IV2X 1FDIA 1TMOA 5FTMA 2JIPA 1WCMA 1CZ4A 1OA7A 2C45A 3X2LA 1O54A 4FFTA 2Y0SA 2PJHB 1BW3A 1PT1A 2YVLA 5DYGA 1OA9A 5EPPA 2GFAA 3QQ7A 1IW7D 1H5NA 4C2MA 2JA6A 2WB1A 1S3SA 2JV2A 2YU9A 3CQZA 5GLFA 4FERA 1SIWA 1G8KA 1E32A 1TWAA 5T5MD 3SUMA 4AONB 3GTQA 3GTMA 2R93A 3X2MA 2NYAA 3HU1A 2MM2A 2XDPA 1AA6A 4JJOA 2A6HD 4AS1A 1CZ5A 2PWYA 3X2GA 5FTJA 4AZDA 1SMYD 1R9TA 3GTPA 1YNJD 1R27A 2R92A 1PQHA 3FKIA 1CR5A 1Y1VA 1Y5IA 2B63A 3FPUA 1PPYA 3QWZA 1VC3B 1ZYRD 2CW0D 3MB5A 5DYIA 2B25A 3ZJTA 4JCWA 4KDIA 2KY9A 2O5JD 4UC4A 4AOKB 5C18A 3GTGA 4DMRA 2R7ZA 3M3GA 2ENGA 4AYBA 1UHDA 1QDNA 1YLEA 4KDLA 3QQ8A 1N10A 5CCXA 1TWCA 4GA6A 3ZJUA 2VPZA 3SUKA 2A68D 2KQAA 1ZC1A 3HU3A 1I9GA 3ZJVA 5FTLA 1PYUB 2DMRA 1DMRA 3GTOA 1KQFA 1K83A 2PI8A 1PT0A 2VPYA 3GTKA 2Q18X 2V3VA 2PJJA 1QCSA 3CZBA 3LHDA 5CCBA 1R7RA 3HKZA 3TM7B 2G6GA 3BQBA 4JP7A 4AQ7A 3X2JA 3SULA 2Q1AX 2MM0A 1TWHA 2KI8A 1BW4A 1I50A 1PQEA 4QIWA 2JIOA 2V45A 1DMSA 3X2PA 2A6ED 2JIQA 4AAYA 2QQRA 1PQFA 4ZM7A 5EQJB 2VPWA 4KO8A 1AW8B 2PICA 2NVXA 2JIMA 1FDOA 2A69D 5T5ID 3SUJA 2E2HA 3X2NA 2G5DA 3QC8A 4CS0A 2HCZX 4ARIA 2Q1DX 2EEOB 3OUGA 3PLXB 1WC2A 1H0HA 4AVRA 2LW6A 2QQSA 3O5AA 4JP6A 2NAPA 1E18A 3X2KA 5C1BA 1KQGA 3X2OA 2Q19X 3GTLA 4ARCA 2AE0X 2VUMA 2YUJA 5D6YA 1Q16A 2BE5D 4L48A 4CRYG 3DMRA
chains in the Genus database with same CATH topology
3GTJA 4GA5A 3IR7A 4FIBA 5FTKA 3IR6A 5CD1A 1E61A 5ERGB 1TWGA 3ZGZA 2WAQA 3FPRA 4CRZA 3ML1A 2GF7A 4NOHA 3TIWA 1E5VA 1WLFA 2PNWA 2JA5A 1YNND 3HU2A 5D6XA 4CQNA 1EU1A 5D6WA 2JIRA 4RV0A 4KLNA 3LGAA 1UHEA 1SFOA 2E7ZA 1E60A 5FTNA 1OGYA 3IR5A 3FPTA 4D7ZB 3H0GA 2VPXA 1I3QA 2JA7A 1TWFA 3CF2A 2GAEA 5B6CA 2E2IA 1Y1WA 2Q1CX 2PMZA 1Y4ZA 1G8JA 4KODA 1PYQA 2NVYA 2IV2X 1FDIA 1TMOA 5FTMA 2JIPA 1WCMA 1CZ4A 2C45A 1O54A 2Y0SA 2PJHB 2YVLA 1PT1A 5DYGA 5EPPA 2GFAA 3QQ7A 1IW7D 1H5NA 4C2MA 2JA6A 2WB1A 1S3SA 2JV2A 2YU9A 3CQZA 5GLFA 1SIWA 1G8KA 1E32A 1TWAA 5T5MD 3GTQA 4AONB 3GTMA 2MM2A 2R93A 2Q1DX 2NYAA 3HU1A 2XDPA 1AA6A 4AS1A 2A6HD 1CZ5A 2PWYA 5FTJA 4AZDA 1SMYD 1R9TA 3GTPA 1YNJD 1R27A 2R92A 1PQHA 3FKIA 1CR5A 1Y1VA 1Y5IA 2B63A 3FPUA 1PPYA 3QWZA 1VC3B 1ZYRD 2CW0D 3MB5A 5DYIA 2B25A 3ZJTA 4KDIA 2KY9A 2O5JD 4UC4A 4AOKB 5C18A 3GTGA 4DMRA 2R7ZA 4AYBA 1UHDA 1QDNA 1YLEA 4KDLA 3QQ8A 5CCXA 1TWCA 4GA6A 3ZJUA 2VPZA 2A68D 3HU3A 1ZC1A 1I9GA 3ZJVA 5FTLA 1PYUB 2DMRA 1DMRA 3GTOA 1KQFA 1K83A 2PI8A 1PT0A 2VPYA 3GTKA 2Q18X 2V3VA 2PJJA 1QCSA 3CZBA 3LHDA 5CCBA 1R7RA 3HKZA 3TM7B 2G6GA 3BQBA 4AQ7A 2Q1AX 2MM0A 1TWHA 2KI8A 1I50A 1PQEA 4QIWA 2JIOA 2V45A 1DMSA 2A6ED 2JIQA 4AAYA 2QQRA 1PQFA 5EQJB 2VPWA 4KO8A 1AW8B 2PICA 2NVXA 2JIMA 1FDOA 2A69D 5T5ID 2E2HA 2G5DA 3QC8A 4CS0A 4ARIA 2EEOB 3OUGA 3PLXB 1H0HA 2LW6A 2QQSA 3O5AA 2NAPA 1E18A 5C1BA 1KQGA 2Q19X 3GTLA 4ARCA 2AE0X 2VUMA 2YUJA 5D6YA 1Q16A 2BE5D 4CRYG 3DMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QWZ A;  5FTM A;  5FTK A;  1CZ4 A;  5DYI A;  2PJH B;  4KDI A;  5DYG A;  5EPP A;  4KO8 A;  3TIW A;  3QQ7 A;  5C18 A;  1WLF A;  1S3S A;  2JV2 A;  5GLF A;  3HU2 A;  3QC8 A;  1QDN A;  4KDL A;  3QQ8 A;  1E32 A;  3HU3 A;  1ZC1 A;  4RV0 A;  3HU1 A;  4KLN A;  5FTL A;  5FTN A;  1CZ5 A;  5C1B A;  5FTJ A;  3CF2 A;  5B6C A;  2YUJ A;  1QCS A;  1R7R A;  4KOD A;  1CR5 A; 
#chains in the Genus database with same CATH topology
 5GM9 A;  4GA5 A;  3GTJ A;  3IR7 A;  4ENG A;  3ENG A;  5H4U A;  1HD5 A;  4FIB A;  5FTK A;  3IR6 A;  5GLX A;  1E61 A;  3X2H A;  5ERG B;  1TWG A;  5CD1 A;  3ZGZ A;  2WAQ A;  1L8F A;  3FPR A;  4CRZ A;  3ML1 A;  2GF7 A;  4FG4 A;  4NOH A;  3TIW A;  1E5V A;  1WLF A;  2PNW A;  2JA5 A;  1YNN D;  5GLY A;  3D30 A;  4JS7 A;  3HU2 A;  5D6X A;  4CQN A;  1EU1 A;  5D6W A;  2JIR A;  4RV0 A;  4KLN A;  3LGA A;  1UHE A;  3X2I A;  1SFO A;  2E7Z A;  4FG2 A;  1E60 A;  5FTN A;  1OGY A;  3IR5 A;  3FPT A;  4D7Z B;  3H0G A;  2BH0 A;  2VPX A;  1I3Q A;  2JA7 A;  1TWF A;  3CF2 A;  2GAE A;  5B6C A;  2E2I A;  1Y1W A;  2Q1C X;  2PMZ A;  1Y4Z A;  1G8J A;  4KOD A;  1PYQ A;  2NVY A;  2IV2 X;  1FDI A;  1TMO A;  5FTM A;  2JIP A;  1WCM A;  1CZ4 A;  1OA7 A;  2C45 A;  3X2L A;  1O54 A;  4FFT A;  2Y0S A;  2PJH B;  1BW3 A;  1PT1 A;  2YVL A;  5DYG A;  1OA9 A;  5EPP A;  2GFA A;  3QQ7 A;  1IW7 D;  1H5N A;  4C2M A;  2JA6 A;  2WB1 A;  1S3S A;  2JV2 A;  2YU9 A;  3CQZ A;  5GLF A;  4FER A;  1SIW A;  1G8K A;  1E32 A;  1TWA A;  5T5M D;  3SUM A;  4AON B;  3GTQ A;  3GTM A;  2R93 A;  3X2M A;  2NYA A;  3HU1 A;  2MM2 A;  2XDP A;  1AA6 A;  4JJO A;  2A6H D;  4AS1 A;  1CZ5 A;  2PWY A;  3X2G A;  5FTJ A;  4AZD A;  1SMY D;  1R9T A;  3GTP A;  1YNJ D;  1R27 A;  2R92 A;  1PQH A;  3FKI A;  1CR5 A;  1Y1V A;  1Y5I A;  2B63 A;  3FPU A;  1PPY A;  3QWZ A;  1VC3 B;  1ZYR D;  2CW0 D;  3MB5 A;  5DYI A;  2B25 A;  3ZJT A;  4JCW A;  4KDI A;  2KY9 A;  2O5J D;  4UC4 A;  4AOK B;  5C18 A;  3GTG A;  4DMR A;  2R7Z A;  3M3G A;  2ENG A;  4AYB A;  1UHD A;  1QDN A;  1YLE A;  4KDL A;  3QQ8 A;  1N10 A;  5CCX A;  1TWC A;  4GA6 A;  3ZJU A;  2VPZ A;  3SUK A;  2A68 D;  2KQA A;  1ZC1 A;  3HU3 A;  1I9G A;  3ZJV A;  5FTL A;  1PYU B;  2DMR A;  1DMR A;  3GTO A;  1KQF A;  1K83 A;  2PI8 A;  1PT0 A;  2VPY A;  3GTK A;  2Q18 X;  2V3V A;  2PJJ A;  1QCS A;  3CZB A;  3LHD A;  5CCB A;  1R7R A;  3HKZ A;  3TM7 B;  2G6G A;  3BQB A;  4JP7 A;  4AQ7 A;  3X2J A;  3SUL A;  2Q1A X;  2MM0 A;  1TWH A;  2KI8 A;  1BW4 A;  1I50 A;  1PQE A;  4QIW A;  2JIO A;  2V45 A;  1DMS A;  3X2P A;  2A6E D;  2JIQ A;  4AAY A;  2QQR A;  1PQF A;  4ZM7 A;  5EQJ B;  2VPW A;  4KO8 A;  1AW8 B;  2PIC A;  2NVX A;  2JIM A;  1FDO A;  2A69 D;  5T5I D;  3SUJ A;  2E2H A;  3X2N A;  2G5D A;  3QC8 A;  4CS0 A;  2HCZ X;  4ARI A;  2Q1D X;  2EEO B;  3OUG A;  3PLX B;  1WC2 A;  1H0H A;  4AVR A;  2LW6 A;  2QQS A;  3O5A A;  4JP6 A;  2NAP A;  1E18 A;  3X2K A;  5C1B A;  1KQG A;  3X2O A;  2Q19 X;  3GTL A;  4ARC A;  2AE0 X;  2VUM A;  2YUJ A;  5D6Y A;  1Q16 A;  2BE5 D;  4L48 A;  4CRY G;  3DMR A; 
#chains in the Genus database with same CATH homology
 3GTJ A;  4GA5 A;  3IR7 A;  4FIB A;  5FTK A;  3IR6 A;  5CD1 A;  1E61 A;  5ERG B;  1TWG A;  3ZGZ A;  2WAQ A;  3FPR A;  4CRZ A;  3ML1 A;  2GF7 A;  4NOH A;  3TIW A;  1E5V A;  1WLF A;  2PNW A;  2JA5 A;  1YNN D;  3HU2 A;  5D6X A;  4CQN A;  1EU1 A;  5D6W A;  2JIR A;  4RV0 A;  4KLN A;  3LGA A;  1UHE A;  1SFO A;  2E7Z A;  1E60 A;  5FTN A;  1OGY A;  3IR5 A;  3FPT A;  4D7Z B;  3H0G A;  2VPX A;  1I3Q A;  2JA7 A;  1TWF A;  3CF2 A;  2GAE A;  5B6C A;  2E2I A;  1Y1W A;  2Q1C X;  2PMZ A;  1Y4Z A;  1G8J A;  4KOD A;  1PYQ A;  2NVY A;  2IV2 X;  1FDI A;  1TMO A;  5FTM A;  2JIP A;  1WCM A;  1CZ4 A;  2C45 A;  1O54 A;  2Y0S A;  2PJH B;  2YVL A;  1PT1 A;  5DYG A;  5EPP A;  2GFA A;  3QQ7 A;  1IW7 D;  1H5N A;  4C2M A;  2JA6 A;  2WB1 A;  1S3S A;  2JV2 A;  2YU9 A;  3CQZ A;  5GLF A;  1SIW A;  1G8K A;  1E32 A;  1TWA A;  5T5M D;  3GTQ A;  4AON B;  3GTM A;  2MM2 A;  2R93 A;  2Q1D X;  2NYA A;  3HU1 A;  2XDP A;  1AA6 A;  4AS1 A;  2A6H D;  1CZ5 A;  2PWY A;  5FTJ A;  4AZD A;  1SMY D;  1R9T A;  3GTP A;  1YNJ D;  1R27 A;  2R92 A;  1PQH A;  3FKI A;  1CR5 A;  1Y1V A;  1Y5I A;  2B63 A;  3FPU A;  1PPY A;  3QWZ A;  1VC3 B;  1ZYR D;  2CW0 D;  3MB5 A;  5DYI A;  2B25 A;  3ZJT A;  4KDI A;  2KY9 A;  2O5J D;  4UC4 A;  4AOK B;  5C18 A;  3GTG A;  4DMR A;  2R7Z A;  4AYB A;  1UHD A;  1QDN A;  1YLE A;  4KDL A;  3QQ8 A;  5CCX A;  1TWC A;  4GA6 A;  3ZJU A;  2VPZ A;  2A68 D;  3HU3 A;  1ZC1 A;  1I9G A;  3ZJV A;  5FTL A;  1PYU B;  2DMR A;  1DMR A;  3GTO A;  1KQF A;  1K83 A;  2PI8 A;  1PT0 A;  2VPY A;  3GTK A;  2Q18 X;  2V3V A;  2PJJ A;  1QCS A;  3CZB A;  3LHD A;  5CCB A;  1R7R A;  3HKZ A;  3TM7 B;  2G6G A;  3BQB A;  4AQ7 A;  2Q1A X;  2MM0 A;  1TWH A;  2KI8 A;  1I50 A;  1PQE A;  4QIW A;  2JIO A;  2V45 A;  1DMS A;  2A6E D;  2JIQ A;  4AAY A;  2QQR A;  1PQF A;  5EQJ B;  2VPW A;  4KO8 A;  1AW8 B;  2PIC A;  2NVX A;  2JIM A;  1FDO A;  2A69 D;  5T5I D;  2E2H A;  2G5D A;  3QC8 A;  4CS0 A;  4ARI A;  2EEO B;  3OUG A;  3PLX B;  1H0H A;  2LW6 A;  2QQS A;  3O5A A;  2NAP A;  1E18 A;  5C1B A;  1KQG A;  2Q19 X;  3GTL A;  4ARC A;  2AE0 X;  2VUM A;  2YUJ A;  5D6Y A;  1Q16 A;  2BE5 D;  4CRY G;  3DMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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