2YUJA

Solution structure of human ubiquitin fusion degradation protein 1 homolog ufd1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
190
structure length
190
Chain Sequence
GSSGSSGIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Ubiquitin fusion degradation 1-like
total genus 25
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2007-04-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.50 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2yujA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2yujA02
1CR5A 4KO8A 5FTMA 1R7RA 4KLNA 3QQ8A 1QDNA 3HU2A 2PJHB 5FTKA 3QWZA 5GLFA 3TIWA 2YUJA 1CZ4A 1QCSA 4KDLA 5EPPA 3QQ7A 1S3SA 5C18A 3HU1A 5DYGA 5FTJA 1ZC1A 5FTNA 2JV2A 1CZ5A 3HU3A 1E32A 4KODA 4KDIA 1WLFA 5C1BA 5FTLA 5B6CA 3CF2A 4RV0A 5DYIA 3QC8A
chains in the Genus database with same CATH superfamily
1G8KA 2HCZX 2GF7A 2QQSA 1R27A 2A6HD 4GA6A 4JCWA 3FPUA 4D7ZB 1DMRA 4ARCA 1UHDA 1DMSA 2Q1CX 5D6XA 2PJHB 3O5AA 1TWAA 4C2MA 5GLFA 2ENGA 2R7ZA 2A6ED 2R92A 1UHEA 2NYAA 1TWCA 2G6GA 1PT1A 4AONB 3X2PA 1KQGA 4AZDA 4FG2A 4QIWA 1Y4ZA 2C45A 3HU1A 4FIBA 2KQAA 3IR7A 1CZ5A 3ML1A 2YVLA 4KODA 2BE5D 2JIMA 4KDIA 5C1BA 1YLEA 2PICA 2Y0SA 2Q1DX 1H5NA 3CF2A 5T5ID 2MM0A 5D6YA 3SUMA 3X2IA 1Y1VA 1I9GA 1H0HA 1EU1A 4CRZA 1ZYRD 3PLXB 2A69D 3CQZA 4FG4A 4AVRA 2GFAA 1FDOA 2YU9A 2O5JD 5D6WA 3QQ8A 4JP6A 1QDNA 4UC4A 2EEOB 2E2IA 1O54A 1PT0A 3IR6A 2VPWA 2YUJA 2DMRA 2NVYA 1CZ4A 1WCMA 2VPXA 1QCSA 2E7ZA 4KDLA 3X2LA 1BW3A 3MB5A 1Y5IA 2JA7A 3ZJVA 3X2JA 1AW8B 2JIOA 3ENGA 1WC2A 1YNND 1S3SA 5C18A 5GM9A 2WB1A 4AS1A 3ZGZA 3HU3A 4L48A 1E32A 4JP7A 3X2HA 2R93A 3FPRA 1G8JA 5ERGB 1AA6A 3GTGA 3GTPA 1E5VA 2JA5A 2XDPA 1PQHA 3X2KA 3X2NA 2JA6A 2LW6A 3LGAA 2JIRA 1BW4A 1OGYA 1Q16A 1CR5A 3GTLA 4KO8A 1N10A 2A68D 4JS7A 1L8FA 2VPZA 3SUKA 2B63A 2PWYA 1R7RA 2V3VA 2V45A 3M3GA 2BH0A 2CW0D 1I3QA 1KQFA 3TIWA 2GAEA 3X2OA 2QQRA 5CD1A 3GTQA 4NOHA 3D30A 1PPYA 2NAPA 4FFTA 3QQ7A 2G5DA 1E60A 4CS0A 5DYGA 5FTJA 1R9TA 4GA5A 2VPYA 3OUGA 2VUMA 2NVXA 3GTOA 2WAQA 1OA7A 2PJJA 2KI8A 2MM2A 3SUJA 5FTLA 3ZJTA 5B6CA 3GTMA 4RV0A 5DYIA 4CRYG 1E61A 1TWFA 1PYUB 1TWGA 3X2GA 5GLYA 1K83A 2Q1AX 1VC3B 1E18A 5FTMA 1PQEA 4DMRA 3LHDA 2IV2X 1HD5A 4KLNA 5H4UA 2E2HA 4ENGA 1Y1WA 2B25A 1PQFA 3HU2A 3GTKA 1SFOA 2PMZA 3DMRA 2KY9A 5CCXA 4AOKB 5FTKA 3QWZA 3HKZA 3BQBA 4AYBA 2PNWA 4ZM7A 1FDIA 5EPPA 3FPTA 1IW7D 2PI8A 1TWHA 3CZBA 4AQ7A 1SIWA 3SULA 4FERA 5GLXA 3GTJA 1SMYD 3FKIA 1OA9A 2AE0X 1YNJD 3H0GA 5CCBA 1ZC1A 5EQJB 5FTNA 1I50A 2JV2A 3ZJUA 2JIQA 2Q19X 3IR5A 2Q18X 1WLFA 2JIPA 4JJOA 3TM7B 1TMOA 4AAYA 4ARIA 5T5MD 1PYQA 3X2MA 3QC8A 4CQNA
chains in the Genus database with same CATH topology
1G8KA 2GF7A 2QQSA 1R27A 2A6HD 4GA6A 3FPUA 4D7ZB 1DMRA 4ARCA 1UHDA 1DMSA 2Q1CX 5D6XA 2PJHB 3O5AA 1TWAA 4C2MA 5GLFA 2R7ZA 2A6ED 2R92A 1UHEA 2NYAA 1TWCA 2G6GA 1PT1A 4AONB 1KQGA 4AZDA 4QIWA 1Y4ZA 2C45A 3HU1A 4FIBA 3IR7A 1CZ5A 3ML1A 2YVLA 4KODA 2BE5D 2JIMA 4KDIA 5C1BA 1YLEA 2PICA 2Y0SA 2Q1DX 1H5NA 3CF2A 5T5ID 2MM0A 5D6YA 1Y1VA 1I9GA 1H0HA 1EU1A 4CRZA 1ZYRD 3PLXB 2A69D 3CQZA 2GFAA 1FDOA 2YU9A 2O5JD 5D6WA 3QQ8A 1QDNA 4UC4A 2EEOB 2E2IA 1O54A 1PT0A 3IR6A 2VPWA 2YUJA 2DMRA 2NVYA 1CZ4A 1WCMA 2VPXA 1QCSA 2E7ZA 4KDLA 3MB5A 1Y5IA 2JA7A 1AW8B 2JIOA 1YNND 1S3SA 5C18A 2WB1A 4AS1A 3ZGZA 3HU3A 3FPRA 1E32A 2R93A 1G8JA 5ERGB 1AA6A 3GTGA 3GTPA 1E5VA 2JA5A 2XDPA 1PQHA 2JA6A 2LW6A 3LGAA 2JIRA 1OGYA 1Q16A 1CR5A 3GTLA 4KO8A 2A68D 2VPZA 2B63A 2PWYA 1R7RA 2V3VA 2V45A 2CW0D 1I3QA 1KQFA 3TIWA 2GAEA 2QQRA 5CD1A 3GTQA 4NOHA 1PPYA 2NAPA 3QQ7A 2G5DA 1E60A 4CS0A 5DYGA 5FTJA 1R9TA 4GA5A 2VPYA 3OUGA 2VUMA 2NVXA 3GTOA 2WAQA 2PJJA 2KI8A 2MM2A 5FTLA 3ZJTA 5B6CA 3GTMA 4RV0A 5DYIA 4CRYG 1E61A 1TWFA 1PYUB 1TWGA 1K83A 2Q1AX 1VC3B 1E18A 5FTMA 1PQEA 4DMRA 3LHDA 2IV2X 4KLNA 1Y1WA 2B25A 2E2HA 3ZJVA 1PQFA 3HU2A 3GTKA 1SFOA 2PMZA 3DMRA 2KY9A 5CCXA 4AOKB 5FTKA 3QWZA 3HKZA 3BQBA 4AYBA 2PNWA 1FDIA 5EPPA 3FPTA 1IW7D 2PI8A 1TWHA 3CZBA 4AQ7A 1SIWA 3GTJA 1SMYD 3FKIA 5CCBA 2AE0X 1YNJD 3H0GA 1ZC1A 5EQJB 5FTNA 1I50A 2JV2A 3ZJUA 2JIQA 2Q19X 3IR5A 2Q18X 1WLFA 2JIPA 4ARIA 3TM7B 1TMOA 4AAYA 5T5MD 1PYQA 3QC8A 4CQNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CR5 A;  4KO8 A;  5FTM A;  1R7R A;  4KLN A;  3QQ8 A;  1QDN A;  3HU2 A;  2PJH B;  5FTK A;  3QWZ A;  5GLF A;  3TIW A;  2YUJ A;  1CZ4 A;  1QCS A;  4KDL A;  5EPP A;  3QQ7 A;  1S3S A;  5C18 A;  3HU1 A;  5DYG A;  5FTJ A;  1ZC1 A;  5FTN A;  2JV2 A;  1CZ5 A;  3HU3 A;  1E32 A;  4KOD A;  4KDI A;  1WLF A;  5C1B A;  5FTL A;  5B6C A;  3CF2 A;  4RV0 A;  5DYI A;  3QC8 A; 
#chains in the Genus database with same CATH topology
 1G8K A;  2HCZ X;  2GF7 A;  2QQS A;  1R27 A;  2A6H D;  4GA6 A;  4JCW A;  3FPU A;  4D7Z B;  1DMR A;  4ARC A;  1UHD A;  1DMS A;  2Q1C X;  5D6X A;  2PJH B;  3O5A A;  1TWA A;  4C2M A;  5GLF A;  2ENG A;  2R7Z A;  2A6E D;  2R92 A;  1UHE A;  2NYA A;  1TWC A;  2G6G A;  1PT1 A;  4AON B;  3X2P A;  1KQG A;  4AZD A;  4FG2 A;  4QIW A;  1Y4Z A;  2C45 A;  3HU1 A;  4FIB A;  2KQA A;  3IR7 A;  1CZ5 A;  3ML1 A;  2YVL A;  4KOD A;  2BE5 D;  2JIM A;  4KDI A;  5C1B A;  1YLE A;  2PIC A;  2Y0S A;  2Q1D X;  1H5N A;  3CF2 A;  5T5I D;  2MM0 A;  5D6Y A;  3SUM A;  3X2I A;  1Y1V A;  1I9G A;  1H0H A;  1EU1 A;  4CRZ A;  1ZYR D;  3PLX B;  2A69 D;  3CQZ A;  4FG4 A;  4AVR A;  2GFA A;  1FDO A;  2YU9 A;  2O5J D;  5D6W A;  3QQ8 A;  4JP6 A;  1QDN A;  4UC4 A;  2EEO B;  2E2I A;  1O54 A;  1PT0 A;  3IR6 A;  2VPW A;  2YUJ A;  2DMR A;  2NVY A;  1CZ4 A;  1WCM A;  2VPX A;  1QCS A;  2E7Z A;  4KDL A;  3X2L A;  1BW3 A;  3MB5 A;  1Y5I A;  2JA7 A;  3ZJV A;  3X2J A;  1AW8 B;  2JIO A;  3ENG A;  1WC2 A;  1YNN D;  1S3S A;  5C18 A;  5GM9 A;  2WB1 A;  4AS1 A;  3ZGZ A;  3HU3 A;  4L48 A;  1E32 A;  4JP7 A;  3X2H A;  2R93 A;  3FPR A;  1G8J A;  5ERG B;  1AA6 A;  3GTG A;  3GTP A;  1E5V A;  2JA5 A;  2XDP A;  1PQH A;  3X2K A;  3X2N A;  2JA6 A;  2LW6 A;  3LGA A;  2JIR A;  1BW4 A;  1OGY A;  1Q16 A;  1CR5 A;  3GTL A;  4KO8 A;  1N10 A;  2A68 D;  4JS7 A;  1L8F A;  2VPZ A;  3SUK A;  2B63 A;  2PWY A;  1R7R A;  2V3V A;  2V45 A;  3M3G A;  2BH0 A;  2CW0 D;  1I3Q A;  1KQF A;  3TIW A;  2GAE A;  3X2O A;  2QQR A;  5CD1 A;  3GTQ A;  4NOH A;  3D30 A;  1PPY A;  2NAP A;  4FFT A;  3QQ7 A;  2G5D A;  1E60 A;  4CS0 A;  5DYG A;  5FTJ A;  1R9T A;  4GA5 A;  2VPY A;  3OUG A;  2VUM A;  2NVX A;  3GTO A;  2WAQ A;  1OA7 A;  2PJJ A;  2KI8 A;  2MM2 A;  3SUJ A;  5FTL A;  3ZJT A;  5B6C A;  3GTM A;  4RV0 A;  5DYI A;  4CRY G;  1E61 A;  1TWF A;  1PYU B;  1TWG A;  3X2G A;  5GLY A;  1K83 A;  2Q1A X;  1VC3 B;  1E18 A;  5FTM A;  1PQE A;  4DMR A;  3LHD A;  2IV2 X;  1HD5 A;  4KLN A;  5H4U A;  2E2H A;  4ENG A;  1Y1W A;  2B25 A;  1PQF A;  3HU2 A;  3GTK A;  1SFO A;  2PMZ A;  3DMR A;  2KY9 A;  5CCX A;  4AOK B;  5FTK A;  3QWZ A;  3HKZ A;  3BQB A;  4AYB A;  2PNW A;  4ZM7 A;  1FDI A;  5EPP A;  3FPT A;  1IW7 D;  2PI8 A;  1TWH A;  3CZB A;  4AQ7 A;  1SIW A;  3SUL A;  4FER A;  5GLX A;  3GTJ A;  1SMY D;  3FKI A;  1OA9 A;  2AE0 X;  1YNJ D;  3H0G A;  5CCB A;  1ZC1 A;  5EQJ B;  5FTN A;  1I50 A;  2JV2 A;  3ZJU A;  2JIQ A;  2Q19 X;  3IR5 A;  2Q18 X;  1WLF A;  2JIP A;  4JJO A;  3TM7 B;  1TMO A;  4AAY A;  4ARI A;  5T5M D;  1PYQ A;  3X2M A;  3QC8 A;  4CQN A; 
#chains in the Genus database with same CATH homology
 1G8K A;  2GF7 A;  2QQS A;  1R27 A;  2A6H D;  4GA6 A;  3FPU A;  4D7Z B;  1DMR A;  4ARC A;  1UHD A;  1DMS A;  2Q1C X;  5D6X A;  2PJH B;  3O5A A;  1TWA A;  4C2M A;  5GLF A;  2R7Z A;  2A6E D;  2R92 A;  1UHE A;  2NYA A;  1TWC A;  2G6G A;  1PT1 A;  4AON B;  1KQG A;  4AZD A;  4QIW A;  1Y4Z A;  2C45 A;  3HU1 A;  4FIB A;  3IR7 A;  1CZ5 A;  3ML1 A;  2YVL A;  4KOD A;  2BE5 D;  2JIM A;  4KDI A;  5C1B A;  1YLE A;  2PIC A;  2Y0S A;  2Q1D X;  1H5N A;  3CF2 A;  5T5I D;  2MM0 A;  5D6Y A;  1Y1V A;  1I9G A;  1H0H A;  1EU1 A;  4CRZ A;  1ZYR D;  3PLX B;  2A69 D;  3CQZ A;  2GFA A;  1FDO A;  2YU9 A;  2O5J D;  5D6W A;  3QQ8 A;  1QDN A;  4UC4 A;  2EEO B;  2E2I A;  1O54 A;  1PT0 A;  3IR6 A;  2VPW A;  2YUJ A;  2DMR A;  2NVY A;  1CZ4 A;  1WCM A;  2VPX A;  1QCS A;  2E7Z A;  4KDL A;  3MB5 A;  1Y5I A;  2JA7 A;  1AW8 B;  2JIO A;  1YNN D;  1S3S A;  5C18 A;  2WB1 A;  4AS1 A;  3ZGZ A;  3HU3 A;  3FPR A;  1E32 A;  2R93 A;  1G8J A;  5ERG B;  1AA6 A;  3GTG A;  3GTP A;  1E5V A;  2JA5 A;  2XDP A;  1PQH A;  2JA6 A;  2LW6 A;  3LGA A;  2JIR A;  1OGY A;  1Q16 A;  1CR5 A;  3GTL A;  4KO8 A;  2A68 D;  2VPZ A;  2B63 A;  2PWY A;  1R7R A;  2V3V A;  2V45 A;  2CW0 D;  1I3Q A;  1KQF A;  3TIW A;  2GAE A;  2QQR A;  5CD1 A;  3GTQ A;  4NOH A;  1PPY A;  2NAP A;  3QQ7 A;  2G5D A;  1E60 A;  4CS0 A;  5DYG A;  5FTJ A;  1R9T A;  4GA5 A;  2VPY A;  3OUG A;  2VUM A;  2NVX A;  3GTO A;  2WAQ A;  2PJJ A;  2KI8 A;  2MM2 A;  5FTL A;  3ZJT A;  5B6C A;  3GTM A;  4RV0 A;  5DYI A;  4CRY G;  1E61 A;  1TWF A;  1PYU B;  1TWG A;  1K83 A;  2Q1A X;  1VC3 B;  1E18 A;  5FTM A;  1PQE A;  4DMR A;  3LHD A;  2IV2 X;  4KLN A;  1Y1W A;  2B25 A;  2E2H A;  3ZJV A;  1PQF A;  3HU2 A;  3GTK A;  1SFO A;  2PMZ A;  3DMR A;  2KY9 A;  5CCX A;  4AOK B;  5FTK A;  3QWZ A;  3HKZ A;  3BQB A;  4AYB A;  2PNW A;  1FDI A;  5EPP A;  3FPT A;  1IW7 D;  2PI8 A;  1TWH A;  3CZB A;  4AQ7 A;  1SIW A;  3GTJ A;  1SMY D;  3FKI A;  5CCB A;  2AE0 X;  1YNJ D;  3H0G A;  1ZC1 A;  5EQJ B;  5FTN A;  1I50 A;  2JV2 A;  3ZJU A;  2JIQ A;  2Q19 X;  3IR5 A;  2Q18 X;  1WLF A;  2JIP A;  4ARI A;  3TM7 B;  1TMO A;  4AAY A;  5T5M D;  1PYQ A;  3QC8 A;  4CQN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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