3QC8A

Crystal structure of faf1 ubx domain in complex with p97/vcp n domain reveals the conserved fcisp touch-turn motif of ubx domain suffering conformational change
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
170
structure length
170
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (130-139)EMPTYTIV1 (31-34)S5 (81-84)TI1 (35-38)S2 (38-40)TI2 (78-81)S4 (66-72)AH1 (43-49)TI4 (123-126)TII1 (52-55)TI'1 (62-65)S9 (150-155)AH2 (86-92)S10 (160-169)TII2 (95-98)S6 (98-104)TII3 (139-142)S7 (113-118)TI3 (105-108)3H1 (120-122)S8 (144-147)TIV3 (156-159)S1 (24-29)TII4 (147-150)TIV2 (61-64)S3 (55-60)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain
pubmed doi rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 48
structure length 170
sequence length 170
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qc8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qc8A02
2NAPA 2NVYA 4KO8A 1AW8B 5C1BA 1R9TA 5FTMA 1Q16A 1E60A 1WLFA 1QCSA 5DYIA 2JA5A 5C18A 3GTKA 3IR7A 1Y1WA 4AAYA 2R93A 2WAQA 2KI8A 2PMZA 1UHDA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 1UHEA 1SFOA 5FTKA 1TWGA 3GTMA 1TMOA 1DMSA 1ZC1A 2E7ZA 1E5VA 3QWZA 1H5NA 4GA6A 3DMRA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 4AYBA 3HU1A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 3O5AA 1SIWA 3FKIA 1PQEA 1TWHA 4CRYG 1I3QA 4AZDA 2JV2A 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3TM7B 3CF2A 1PYUB 2EEOB 5T5ID 4CRZA 1E18A 3QQ7A 3GTJA 2PJHB 4KDLA 2YUJA 2JIRA 2VPWA 2VPYA 3ML1A 5GLFA 1KQFA 2VPZA 5EPPA 3GTLA 1VC3B 1PYQA 4CS0A 2R7ZA 3HU3A 1OGYA 3OUGA 3PLXB 1TWFA 1R7RA 5B6CA 2E2HA 5FTJA 1PQFA 3H0GA 3GTQA 1DMRA 3QQ8A 3GTPA 2JIQA 1CZ4A 5DYGA 2JIOA 3QC8A 2JIMA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 1G8JA 4KODA 4D7ZB 2IV2X 2B63A 1S3SA 1Y1VA 2V3VA 3CQZA 1AA6A 3GTOA 1G8KA 2JA6A 4GA5A 3TIWA 2NYAA 1QDNA 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 1H0HA 1FDIA 1WCMA 3GTGA 1TWAA 4KLNA 2Y0SA 2NVXA
chains in the Genus database with same CATH superfamily
4FERA 2BH0A 2NAPA 2NVYA 4KO8A 2PI8A 1AW8B 2G5DA 5C1BA 1R9TA 5FTMA 4AQ7A 2HCZX 2KQAA 4ENGA 1Q16A 1E60A 2PICA 1WLFA 1QCSA 5DYIA 2JA5A 4L48A 3ZJTA 5C18A 4FIBA 3GTKA 3IR7A 1Y1WA 3X2GA 2Q1AX 4AAYA 2R93A 2WAQA 2O5JD 2KI8A 2PMZA 1UHDA 3ZGZA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 2AE0X 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 5ERGB 1UHEA 1SFOA 5FTKA 1TWGA 2ENGA 2KY9A 3GTMA 4JP7A 1WC2A 1TMOA 3LHDA 1DMSA 1ZC1A 3X2KA 2Q1CX 2E7ZA 2B25A 1E5VA 3QWZA 2XDPA 1H5NA 5D6XA 4GA6A 4ARIA 3DMRA 3ZJVA 2PNWA 2Q18X 5D6WA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 3X2PA 1HD5A 3SUMA 3HU1A 4AYBA 1BW4A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 4AS1A 3O5AA 1SIWA 3X2JA 3FKIA 3SUKA 4FG4A 2PJJA 3M3GA 2A69D 4AVRA 2MM2A 1PQEA 1TWHA 3X2HA 4CRYG 1I3QA 5GLXA 3ZJUA 4AZDA 4JCWA 2JV2A 3X2IA 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3ENGA 3TM7B 3CF2A 1PYUB 2Q1DX 1L8FA 2EEOB 3MB5A 5T5ID 4ARCA 3D30A 4CRZA 1E18A 4NOHA 3QQ7A 1I9GA 3GTJA 2PJHB 2YUJA 4KDLA 5EQJB 2JIRA 2VPWA 2VPYA 5GM9A 3ML1A 5GLFA 2QQRA 1KQFA 2CW0D 2VPZA 5EPPA 1O54A 4FFTA 2LW6A 2PWYA 5D6YA 3GTLA 2A68D 4JS7A 1VC3B 5CD1A 1PYQA 1ZYRD 3CZBA 4CS0A 5CCXA 1SMYD 1YNND 3HU3A 2R7ZA 1OGYA 3OUGA 2GF7A 5CCBA 3LGAA 3PLXB 3X2MA 1TWFA 1R7RA 5B6CA 3BQBA 3X2NA 2E2HA 5FTJA 1BW3A 1PQFA 3H0GA 5H4UA 3GTQA 3FPTA 1DMRA 1YNJD 4FG2A 3QQ8A 1N10A 2G6GA 2JIQA 3GTPA 1CZ4A 5DYGA 2JIOA 3QC8A 2YVLA 1OA9A 2JIMA 4JP6A 4JJOA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 2GFAA 1G8JA 4KODA 4D7ZB 3FPUA 2GAEA 3SUJA 3X2LA 4UC4A 2QQSA 4ZM7A 2IV2X 2B63A 1S3SA 1Y1VA 3FPRA 2V3VA 2BE5D 1OA7A 3CQZA 5GLYA 1AA6A 1G8KA 3GTOA 4GA5A 2A6ED 2NYAA 3TIWA 2JA6A 4CQNA 1QDNA 2Q19X 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 3X2OA 2A6HD 1H0HA 1FDIA 1WCMA 3GTGA 2MM0A 1TWAA 4KLNA 3SULA 2Y0SA 2NVXA
chains in the Genus database with same CATH topology
2NAPA 2NVYA 4KO8A 2PI8A 1AW8B 2G5DA 5C1BA 1R9TA 5FTMA 4AQ7A 1Q16A 1E60A 2PICA 1WLFA 1QCSA 5DYIA 2JA5A 3ZJTA 5C18A 4FIBA 3GTKA 3IR7A 1Y1WA 2Q1AX 4AAYA 2R93A 2WAQA 2O5JD 2KI8A 2PMZA 1UHDA 3ZGZA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 2AE0X 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 5ERGB 1UHEA 1SFOA 5FTKA 1TWGA 2KY9A 3GTMA 1TMOA 3LHDA 1DMSA 1ZC1A 2Q1CX 2E7ZA 2B25A 1E5VA 3QWZA 2XDPA 1H5NA 5D6XA 4GA6A 4ARIA 3DMRA 3ZJVA 2PNWA 2Q18X 5D6WA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 4AYBA 3HU1A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 4AS1A 3O5AA 1SIWA 3FKIA 2PJJA 2A69D 2MM2A 1PQEA 1TWHA 4CRYG 3ZJUA 1I3QA 4AZDA 2JV2A 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3TM7B 3CF2A 1PYUB 2Q1DX 2EEOB 3MB5A 5T5ID 4ARCA 4CRZA 1E18A 4NOHA 3QQ7A 1I9GA 3GTJA 2PJHB 2YUJA 4KDLA 5EQJB 2JIRA 2VPWA 2VPYA 3ML1A 5GLFA 2QQRA 1KQFA 2CW0D 2VPZA 5EPPA 1O54A 2LW6A 2PWYA 5D6YA 3GTLA 2A68D 1VC3B 5CD1A 1PYQA 1ZYRD 3CZBA 4CS0A 5CCXA 1SMYD 1YNND 3HU3A 2R7ZA 1OGYA 3OUGA 2GF7A 5CCBA 3LGAA 3PLXB 1TWFA 1R7RA 5B6CA 3BQBA 2E2HA 5FTJA 3FPTA 1PQFA 3H0GA 3GTQA 1DMRA 1YNJD 3QQ8A 3GTPA 2G6GA 2JIQA 2YVLA 1CZ4A 5DYGA 2JIOA 3QC8A 2JIMA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 2GFAA 1G8JA 4KODA 4D7ZB 3FPUA 2GAEA 4UC4A 2QQSA 2IV2X 2B63A 1S3SA 1Y1VA 3FPRA 2V3VA 2BE5D 3CQZA 1AA6A 3GTOA 1G8KA 2JA6A 4GA5A 2A6ED 2NYAA 3TIWA 4CQNA 1QDNA 2Q19X 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 2A6HD 1H0HA 1FDIA 1WCMA 3GTGA 2MM0A 1TWAA 4KLNA 2Y0SA 2NVXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NAP A;  2NVY A;  4KO8 A;  1AW8 B;  5C1B A;  1R9T A;  5FTM A;  1Q16 A;  1E60 A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  5C18 A;  3GTK A;  3IR7 A;  1Y1W A;  4AAY A;  2R93 A;  2WAQ A;  2KI8 A;  2PMZ A;  1UHD A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  3GTM A;  1TMO A;  1DMS A;  1ZC1 A;  2E7Z A;  1E5V A;  3QWZ A;  1H5N A;  4GA6 A;  3DMR A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  4AYB A;  3HU1 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  3O5A A;  1SIW A;  3FKI A;  1PQE A;  1TWH A;  4CRY G;  1I3Q A;  4AZD A;  2JV2 A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3TM7 B;  3CF2 A;  1PYU B;  2EEO B;  5T5I D;  4CRZ A;  1E18 A;  3QQ7 A;  3GTJ A;  2PJH B;  4KDL A;  2YUJ A;  2JIR A;  2VPW A;  2VPY A;  3ML1 A;  5GLF A;  1KQF A;  2VPZ A;  5EPP A;  3GTL A;  1VC3 B;  1PYQ A;  4CS0 A;  2R7Z A;  3HU3 A;  1OGY A;  3OUG A;  3PLX B;  1TWF A;  1R7R A;  5B6C A;  2E2H A;  5FTJ A;  1PQF A;  3H0G A;  3GTQ A;  1DMR A;  3QQ8 A;  3GTP A;  2JIQ A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  2JIM A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  1G8J A;  4KOD A;  4D7Z B;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  2V3V A;  3CQZ A;  1AA6 A;  3GTO A;  1G8K A;  2JA6 A;  4GA5 A;  3TIW A;  2NYA A;  1QDN A;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  1TWA A;  4KLN A;  2Y0S A;  2NVX A; 
#chains in the Genus database with same CATH topology
 4FER A;  2BH0 A;  2NAP A;  2NVY A;  4KO8 A;  2PI8 A;  1AW8 B;  2G5D A;  5C1B A;  1R9T A;  5FTM A;  4AQ7 A;  2HCZ X;  2KQA A;  4ENG A;  1Q16 A;  1E60 A;  2PIC A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  4L48 A;  3ZJT A;  5C18 A;  4FIB A;  3GTK A;  3IR7 A;  1Y1W A;  3X2G A;  2Q1A X;  4AAY A;  2R93 A;  2WAQ A;  2O5J D;  2KI8 A;  2PMZ A;  1UHD A;  3ZGZ A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  2AE0 X;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  5ERG B;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  2ENG A;  2KY9 A;  3GTM A;  4JP7 A;  1WC2 A;  1TMO A;  3LHD A;  1DMS A;  1ZC1 A;  3X2K A;  2Q1C X;  2E7Z A;  2B25 A;  1E5V A;  3QWZ A;  2XDP A;  1H5N A;  5D6X A;  4GA6 A;  4ARI A;  3DMR A;  3ZJV A;  2PNW A;  2Q18 X;  5D6W A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  3X2P A;  1HD5 A;  3SUM A;  3HU1 A;  4AYB A;  1BW4 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  4AS1 A;  3O5A A;  1SIW A;  3X2J A;  3FKI A;  3SUK A;  4FG4 A;  2PJJ A;  3M3G A;  2A69 D;  4AVR A;  2MM2 A;  1PQE A;  1TWH A;  3X2H A;  4CRY G;  1I3Q A;  5GLX A;  3ZJU A;  4AZD A;  4JCW A;  2JV2 A;  3X2I A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3ENG A;  3TM7 B;  3CF2 A;  1PYU B;  2Q1D X;  1L8F A;  2EEO B;  3MB5 A;  5T5I D;  4ARC A;  3D30 A;  4CRZ A;  1E18 A;  4NOH A;  3QQ7 A;  1I9G A;  3GTJ A;  2PJH B;  2YUJ A;  4KDL A;  5EQJ B;  2JIR A;  2VPW A;  2VPY A;  5GM9 A;  3ML1 A;  5GLF A;  2QQR A;  1KQF A;  2CW0 D;  2VPZ A;  5EPP A;  1O54 A;  4FFT A;  2LW6 A;  2PWY A;  5D6Y A;  3GTL A;  2A68 D;  4JS7 A;  1VC3 B;  5CD1 A;  1PYQ A;  1ZYR D;  3CZB A;  4CS0 A;  5CCX A;  1SMY D;  1YNN D;  3HU3 A;  2R7Z A;  1OGY A;  3OUG A;  2GF7 A;  5CCB A;  3LGA A;  3PLX B;  3X2M A;  1TWF A;  1R7R A;  5B6C A;  3BQB A;  3X2N A;  2E2H A;  5FTJ A;  1BW3 A;  1PQF A;  3H0G A;  5H4U A;  3GTQ A;  3FPT A;  1DMR A;  1YNJ D;  4FG2 A;  3QQ8 A;  1N10 A;  2G6G A;  2JIQ A;  3GTP A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  2YVL A;  1OA9 A;  2JIM A;  4JP6 A;  4JJO A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  2GFA A;  1G8J A;  4KOD A;  4D7Z B;  3FPU A;  2GAE A;  3SUJ A;  3X2L A;  4UC4 A;  2QQS A;  4ZM7 A;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  3FPR A;  2V3V A;  2BE5 D;  1OA7 A;  3CQZ A;  5GLY A;  1AA6 A;  1G8K A;  3GTO A;  4GA5 A;  2A6E D;  2NYA A;  3TIW A;  2JA6 A;  4CQN A;  1QDN A;  2Q19 X;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  3X2O A;  2A6H D;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  2MM0 A;  1TWA A;  4KLN A;  3SUL A;  2Y0S A;  2NVX A; 
#chains in the Genus database with same CATH homology
 2NAP A;  2NVY A;  4KO8 A;  2PI8 A;  1AW8 B;  2G5D A;  5C1B A;  1R9T A;  5FTM A;  4AQ7 A;  1Q16 A;  1E60 A;  2PIC A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  3ZJT A;  5C18 A;  4FIB A;  3GTK A;  3IR7 A;  1Y1W A;  2Q1A X;  4AAY A;  2R93 A;  2WAQ A;  2O5J D;  2KI8 A;  2PMZ A;  1UHD A;  3ZGZ A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  2AE0 X;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  5ERG B;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  2KY9 A;  3GTM A;  1TMO A;  3LHD A;  1DMS A;  1ZC1 A;  2Q1C X;  2E7Z A;  2B25 A;  1E5V A;  3QWZ A;  2XDP A;  1H5N A;  5D6X A;  4GA6 A;  4ARI A;  3DMR A;  3ZJV A;  2PNW A;  2Q18 X;  5D6W A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  4AYB A;  3HU1 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  4AS1 A;  3O5A A;  1SIW A;  3FKI A;  2PJJ A;  2A69 D;  2MM2 A;  1PQE A;  1TWH A;  4CRY G;  3ZJU A;  1I3Q A;  4AZD A;  2JV2 A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3TM7 B;  3CF2 A;  1PYU B;  2Q1D X;  2EEO B;  3MB5 A;  5T5I D;  4ARC A;  4CRZ A;  1E18 A;  4NOH A;  3QQ7 A;  1I9G A;  3GTJ A;  2PJH B;  2YUJ A;  4KDL A;  5EQJ B;  2JIR A;  2VPW A;  2VPY A;  3ML1 A;  5GLF A;  2QQR A;  1KQF A;  2CW0 D;  2VPZ A;  5EPP A;  1O54 A;  2LW6 A;  2PWY A;  5D6Y A;  3GTL A;  2A68 D;  1VC3 B;  5CD1 A;  1PYQ A;  1ZYR D;  3CZB A;  4CS0 A;  5CCX A;  1SMY D;  1YNN D;  3HU3 A;  2R7Z A;  1OGY A;  3OUG A;  2GF7 A;  5CCB A;  3LGA A;  3PLX B;  1TWF A;  1R7R A;  5B6C A;  3BQB A;  2E2H A;  5FTJ A;  3FPT A;  1PQF A;  3H0G A;  3GTQ A;  1DMR A;  1YNJ D;  3QQ8 A;  3GTP A;  2G6G A;  2JIQ A;  2YVL A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  2JIM A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  2GFA A;  1G8J A;  4KOD A;  4D7Z B;  3FPU A;  2GAE A;  4UC4 A;  2QQS A;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  3FPR A;  2V3V A;  2BE5 D;  3CQZ A;  1AA6 A;  3GTO A;  1G8K A;  2JA6 A;  4GA5 A;  2A6E D;  2NYA A;  3TIW A;  4CQN A;  1QDN A;  2Q19 X;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  2A6H D;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  2MM0 A;  1TWA A;  4KLN A;  2Y0S A;  2NVX A; 
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