3QC8A

Crystal structure of faf1 ubx domain in complex with p97/vcp n domain reveals the conserved fcisp touch-turn motif of ubx domain suffering conformational change
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
170
structure length
170
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain
pubmed doi rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 48
structure length 170
sequence length 170
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qc8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qc8A02
1PQEA 2PJHB 5C1BA 2R7ZA 2R93A 2R92A 1ZC1A 3QQ8A 4KODA 5T5MD 4AONB 1PYUB 4KDIA 1R7RA 1TWAA 2VPYA 1Y1VA 5EPPA 1Y4ZA 1G8KA 1EU1A 1PT0A 1I3QA 2YUJA 3TIWA 1I50A 1E18A 1E60A 1FDIA 5C18A 4GA5A 1S3SA 2JIRA 4AZDA 2JA5A 1PT1A 1DMSA 4KDLA 3PLXB 5B6CA 2Y0SA 4AOKB 3TM7B 2E7ZA 3QC8A 4DMRA 3FKIA 1KQFA 1UHEA 2JA6A 1AW8B 3HU1A 1IW7D 2VPXA 3HU2A 4CRZA 1R27A 3QQ7A 2VPWA 5DYIA 1OGYA 3GTQA 3QWZA 2YU9A 4RV0A 4D7ZB 1Y5IA 1FDOA 1E61A 3CQZA 1WCMA 2NAPA 3HU3A 1H0HA 3O5AA 3CF2A 1DMRA 1G8JA 5FTNA 1SFOA 2V3VA 2JIQA 4KLNA 4CS0A 2VUMA 1KQGA 1VC3B 2NVXA 5DYGA 4QIWA 2B63A 2V45A 1PYQA 2JIPA 1QDNA 3GTLA 1SIWA 3GTPA 2E2IA 1UHDA 2JIOA 2WB1A 2JA7A 1TWGA 2JIMA 2PMZA 5GLFA 2KI8A 1H5NA 1TWCA 2NYAA 1CZ4A 4AYBA 3GTMA 5FTJA 3IR5A 3GTOA 3IR6A 1TWHA 1R9TA 4GA6A 3OUGA 1YLEA 2WAQA 1Y1WA 1TWFA 2NVYA 1QCSA 5FTLA 3GTGA 1E5VA 1PPYA 3DMRA 3HKZA 1E32A 3H0GA 5T5ID 4C2MA 1Q16A 2C45A 3GTJA 2E2HA 4KO8A 1CZ5A 1WLFA 2IV2X 3ML1A 3IR7A 2DMRA 1TMOA 1PQHA 3GTKA 2VPZA 1CR5A 2JV2A 2EEOB 4CRYG 1K83A 5FTKA 4AAYA 1AA6A 1PQFA 5FTMA
chains in the Genus database with same CATH superfamily
1PQEA 3BQBA 4FG4A 1O54A 4FG2A 2PJHB 3X2KA 4FFTA 5C1BA 2A68D 2R93A 2R92A 3SUKA 1ZC1A 3QQ8A 2R7ZA 5D6WA 4KODA 5T5MD 4AONB 1OA7A 2QQRA 1PYUB 4KDIA 2Q1CX 1R7RA 5D6YA 1I9GA 1TWAA 2VPYA 4AQ7A 1Y1VA 5EPPA 1Y4ZA 5GLXA 1G8KA 1EU1A 1PT0A 1I3QA 4JJOA 1HD5A 2YUJA 3TIWA 1I50A 3LHDA 1E18A 1E60A 1FDIA 5C18A 2Q18X 3MB5A 4GA5A 2HCZX 1S3SA 2PI8A 2JIRA 5CCBA 3ZGZA 4AZDA 2JA5A 1PT1A 5CCXA 1DMSA 3M3GA 4KDLA 4L48A 2A6HD 3X2LA 2KQAA 3PLXB 5B6CA 2Y0SA 4AOKB 3CZBA 3TM7B 5D6XA 2E7ZA 3QC8A 4DMRA 2GAEA 1OA9A 3FKIA 2PWYA 1KQFA 1UHEA 2JA6A 1AW8B 3X2MA 3X2GA 3FPRA 2Q1AX 4NOHA 3HU1A 1IW7D 2VPXA 3HU2A 4ARCA 4CRZA 4JP7A 1R27A 3QQ7A 2VPWA 5DYIA 1OGYA 3GTQA 3QWZA 2YU9A 1BW4A 4RV0A 4D7ZB 1Y5IA 1FDOA 2MM2A 4JP6A 1E61A 3CQZA 1WCMA 2NAPA 3HU3A 3FPUA 3X2PA 1H0HA 3O5AA 2O5JD 3CF2A 3D30A 2B25A 1DMRA 5EQJB 1G8JA 5FTNA 2MM0A 2AE0X 3ZJUA 5GLYA 1SFOA 2Q19X 3FPTA 2V3VA 2JIQA 4KLNA 4CS0A 2VUMA 1BW3A 1KQGA 1VC3B 2NVXA 5DYGA 4QIWA 2B63A 2BE5D 2V45A 4ENGA 1PYQA 2A6ED 2JIPA 1QDNA 3ZJVA 4FIBA 3GTLA 1SIWA 3ENGA 2XDPA 3GTPA 2E2IA 1UHDA 1SMYD 2JIOA 2WB1A 2G5DA 3X2IA 2JA7A 1TWGA 2JIMA 2PMZA 5GLFA 2GFAA 2G6GA 2KI8A 2KY9A 2PJJA 2Q1DX 1H5NA 1TWCA 2NYAA 2YVLA 1CZ4A 4AYBA 5ERGB 3GTMA 4AVRA 5FTJA 3IR5A 3GTOA 3IR6A 3X2NA 1N10A 1L8FA 1TWHA 1R9TA 4GA6A 2PNWA 3OUGA 4UC4A 1YLEA 2WAQA 2ENGA 2CW0D 3SUMA 1TWFA 2A69D 2NVYA 1Y1WA 5CD1A 3ZJTA 1QCSA 5FTLA 2PICA 3GTGA 1E5VA 1PPYA 2QQSA 4AS1A 3DMRA 3HKZA 4CQNA 2GF7A 1E32A 3H0GA 5T5ID 4C2MA 1Q16A 2C45A 3GTJA 2E2HA 4KO8A 1CZ5A 1WLFA 2IV2X 3ML1A 3IR7A 2DMRA 4JCWA 2BH0A 1TMOA 1PQHA 3X2OA 5H4UA 3GTKA 2LW6A 3SULA 2VPZA 1CR5A 5GM9A 2JV2A 3X2JA 1YNJD 1YNND 2EEOB 4CRYG 1WC2A 1K83A 3X2HA 5FTKA 4JS7A 4ARIA 4ZM7A 4AAYA 1AA6A 1ZYRD 3LGAA 1PQFA 3SUJA 4FERA 5FTMA
chains in the Genus database with same CATH topology
1PQEA 3BQBA 1O54A 2PJHB 5C1BA 2A68D 2R93A 2R92A 2R7ZA 1ZC1A 3QQ8A 5D6WA 4KODA 5T5MD 4AONB 2QQRA 1PYUB 4KDIA 2Q1CX 1R7RA 5D6YA 1I9GA 1TWAA 2VPYA 4AQ7A 1Y1VA 5EPPA 1Y4ZA 1G8KA 1EU1A 1PT0A 1I3QA 2YUJA 3TIWA 1I50A 3LHDA 1E18A 1E60A 1FDIA 5C18A 2Q18X 3MB5A 4GA5A 1S3SA 2PI8A 2JIRA 5CCBA 3ZGZA 4AZDA 2JA5A 1PT1A 5CCXA 1DMSA 4KDLA 2A6HD 3PLXB 5B6CA 2Y0SA 4AOKB 3CZBA 3TM7B 5D6XA 2E7ZA 3QC8A 4DMRA 2GAEA 3FKIA 2PWYA 1KQFA 1UHEA 2JA6A 1AW8B 3FPRA 2Q1AX 4NOHA 3HU1A 1IW7D 2VPXA 3HU2A 4ARCA 4CRZA 1R27A 3QQ7A 2VPWA 5DYIA 1OGYA 3GTQA 3QWZA 2YU9A 4RV0A 4D7ZB 1Y5IA 1FDOA 2MM2A 1E61A 3CQZA 1WCMA 2NAPA 3HU3A 3FPUA 1H0HA 3O5AA 2O5JD 3CF2A 2B25A 1DMRA 5EQJB 1G8JA 5FTNA 2MM0A 2AE0X 3ZJUA 1SFOA 3FPTA 2Q19X 2V3VA 2JIQA 4KLNA 4CS0A 2VUMA 1KQGA 1VC3B 2NVXA 5DYGA 4QIWA 2B63A 2BE5D 2V45A 1PYQA 2A6ED 2JIPA 1QDNA 3ZJVA 4FIBA 3GTLA 1SIWA 2XDPA 3GTPA 2E2IA 1UHDA 1SMYD 2JIOA 2WB1A 2G5DA 2JA7A 1TWGA 2JIMA 2PMZA 5GLFA 2GFAA 2G6GA 2KI8A 2KY9A 2PJJA 2Q1DX 1H5NA 1TWCA 2NYAA 2YVLA 1CZ4A 4AYBA 5ERGB 3GTMA 5FTJA 3IR5A 3GTOA 3IR6A 1TWHA 1R9TA 4UC4A 4GA6A 2PNWA 3OUGA 1YLEA 2WAQA 2CW0D 1Y1WA 1TWFA 2A69D 2NVYA 5CD1A 4CQNA 3ZJTA 1QCSA 5FTLA 2PICA 3GTGA 1E5VA 1PPYA 2QQSA 4AS1A 3DMRA 3HKZA 2GF7A 1E32A 3H0GA 5T5ID 4C2MA 1Q16A 2C45A 3GTJA 2E2HA 4KO8A 1CZ5A 1WLFA 2IV2X 3ML1A 3IR7A 2DMRA 1TMOA 1PQHA 3GTKA 2LW6A 2VPZA 1CR5A 2JV2A 1YNJD 1YNND 2EEOB 4CRYG 1K83A 5FTKA 4ARIA 4AAYA 1AA6A 1ZYRD 3LGAA 1PQFA 5FTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PQE A;  2PJH B;  5C1B A;  2R7Z A;  2R93 A;  2R92 A;  1ZC1 A;  3QQ8 A;  4KOD A;  5T5M D;  4AON B;  1PYU B;  4KDI A;  1R7R A;  1TWA A;  2VPY A;  1Y1V A;  5EPP A;  1Y4Z A;  1G8K A;  1EU1 A;  1PT0 A;  1I3Q A;  2YUJ A;  3TIW A;  1I50 A;  1E18 A;  1E60 A;  1FDI A;  5C18 A;  4GA5 A;  1S3S A;  2JIR A;  4AZD A;  2JA5 A;  1PT1 A;  1DMS A;  4KDL A;  3PLX B;  5B6C A;  2Y0S A;  4AOK B;  3TM7 B;  2E7Z A;  3QC8 A;  4DMR A;  3FKI A;  1KQF A;  1UHE A;  2JA6 A;  1AW8 B;  3HU1 A;  1IW7 D;  2VPX A;  3HU2 A;  4CRZ A;  1R27 A;  3QQ7 A;  2VPW A;  5DYI A;  1OGY A;  3GTQ A;  3QWZ A;  2YU9 A;  4RV0 A;  4D7Z B;  1Y5I A;  1FDO A;  1E61 A;  3CQZ A;  1WCM A;  2NAP A;  3HU3 A;  1H0H A;  3O5A A;  3CF2 A;  1DMR A;  1G8J A;  5FTN A;  1SFO A;  2V3V A;  2JIQ A;  4KLN A;  4CS0 A;  2VUM A;  1KQG A;  1VC3 B;  2NVX A;  5DYG A;  4QIW A;  2B63 A;  2V45 A;  1PYQ A;  2JIP A;  1QDN A;  3GTL A;  1SIW A;  3GTP A;  2E2I A;  1UHD A;  2JIO A;  2WB1 A;  2JA7 A;  1TWG A;  2JIM A;  2PMZ A;  5GLF A;  2KI8 A;  1H5N A;  1TWC A;  2NYA A;  1CZ4 A;  4AYB A;  3GTM A;  5FTJ A;  3IR5 A;  3GTO A;  3IR6 A;  1TWH A;  1R9T A;  4GA6 A;  3OUG A;  1YLE A;  2WAQ A;  1Y1W A;  1TWF A;  2NVY A;  1QCS A;  5FTL A;  3GTG A;  1E5V A;  1PPY A;  3DMR A;  3HKZ A;  1E32 A;  3H0G A;  5T5I D;  4C2M A;  1Q16 A;  2C45 A;  3GTJ A;  2E2H A;  4KO8 A;  1CZ5 A;  1WLF A;  2IV2 X;  3ML1 A;  3IR7 A;  2DMR A;  1TMO A;  1PQH A;  3GTK A;  2VPZ A;  1CR5 A;  2JV2 A;  2EEO B;  4CRY G;  1K83 A;  5FTK A;  4AAY A;  1AA6 A;  1PQF A;  5FTM A; 
#chains in the Genus database with same CATH topology
 1PQE A;  3BQB A;  4FG4 A;  1O54 A;  4FG2 A;  2PJH B;  3X2K A;  4FFT A;  5C1B A;  2A68 D;  2R93 A;  2R92 A;  3SUK A;  1ZC1 A;  3QQ8 A;  2R7Z A;  5D6W A;  4KOD A;  5T5M D;  4AON B;  1OA7 A;  2QQR A;  1PYU B;  4KDI A;  2Q1C X;  1R7R A;  5D6Y A;  1I9G A;  1TWA A;  2VPY A;  4AQ7 A;  1Y1V A;  5EPP A;  1Y4Z A;  5GLX A;  1G8K A;  1EU1 A;  1PT0 A;  1I3Q A;  4JJO A;  1HD5 A;  2YUJ A;  3TIW A;  1I50 A;  3LHD A;  1E18 A;  1E60 A;  1FDI A;  5C18 A;  2Q18 X;  3MB5 A;  4GA5 A;  2HCZ X;  1S3S A;  2PI8 A;  2JIR A;  5CCB A;  3ZGZ A;  4AZD A;  2JA5 A;  1PT1 A;  5CCX A;  1DMS A;  3M3G A;  4KDL A;  4L48 A;  2A6H D;  3X2L A;  2KQA A;  3PLX B;  5B6C A;  2Y0S A;  4AOK B;  3CZB A;  3TM7 B;  5D6X A;  2E7Z A;  3QC8 A;  4DMR A;  2GAE A;  1OA9 A;  3FKI A;  2PWY A;  1KQF A;  1UHE A;  2JA6 A;  1AW8 B;  3X2M A;  3X2G A;  3FPR A;  2Q1A X;  4NOH A;  3HU1 A;  1IW7 D;  2VPX A;  3HU2 A;  4ARC A;  4CRZ A;  4JP7 A;  1R27 A;  3QQ7 A;  2VPW A;  5DYI A;  1OGY A;  3GTQ A;  3QWZ A;  2YU9 A;  1BW4 A;  4RV0 A;  4D7Z B;  1Y5I A;  1FDO A;  2MM2 A;  4JP6 A;  1E61 A;  3CQZ A;  1WCM A;  2NAP A;  3HU3 A;  3FPU A;  3X2P A;  1H0H A;  3O5A A;  2O5J D;  3CF2 A;  3D30 A;  2B25 A;  1DMR A;  5EQJ B;  1G8J A;  5FTN A;  2MM0 A;  2AE0 X;  3ZJU A;  5GLY A;  1SFO A;  2Q19 X;  3FPT A;  2V3V A;  2JIQ A;  4KLN A;  4CS0 A;  2VUM A;  1BW3 A;  1KQG A;  1VC3 B;  2NVX A;  5DYG A;  4QIW A;  2B63 A;  2BE5 D;  2V45 A;  4ENG A;  1PYQ A;  2A6E D;  2JIP A;  1QDN A;  3ZJV A;  4FIB A;  3GTL A;  1SIW A;  3ENG A;  2XDP A;  3GTP A;  2E2I A;  1UHD A;  1SMY D;  2JIO A;  2WB1 A;  2G5D A;  3X2I A;  2JA7 A;  1TWG A;  2JIM A;  2PMZ A;  5GLF A;  2GFA A;  2G6G A;  2KI8 A;  2KY9 A;  2PJJ A;  2Q1D X;  1H5N A;  1TWC A;  2NYA A;  2YVL A;  1CZ4 A;  4AYB A;  5ERG B;  3GTM A;  4AVR A;  5FTJ A;  3IR5 A;  3GTO A;  3IR6 A;  3X2N A;  1N10 A;  1L8F A;  1TWH A;  1R9T A;  4GA6 A;  2PNW A;  3OUG A;  4UC4 A;  1YLE A;  2WAQ A;  2ENG A;  2CW0 D;  3SUM A;  1TWF A;  2A69 D;  2NVY A;  1Y1W A;  5CD1 A;  3ZJT A;  1QCS A;  5FTL A;  2PIC A;  3GTG A;  1E5V A;  1PPY A;  2QQS A;  4AS1 A;  3DMR A;  3HKZ A;  4CQN A;  2GF7 A;  1E32 A;  3H0G A;  5T5I D;  4C2M A;  1Q16 A;  2C45 A;  3GTJ A;  2E2H A;  4KO8 A;  1CZ5 A;  1WLF A;  2IV2 X;  3ML1 A;  3IR7 A;  2DMR A;  4JCW A;  2BH0 A;  1TMO A;  1PQH A;  3X2O A;  5H4U A;  3GTK A;  2LW6 A;  3SUL A;  2VPZ A;  1CR5 A;  5GM9 A;  2JV2 A;  3X2J A;  1YNJ D;  1YNN D;  2EEO B;  4CRY G;  1WC2 A;  1K83 A;  3X2H A;  5FTK A;  4JS7 A;  4ARI A;  4ZM7 A;  4AAY A;  1AA6 A;  1ZYR D;  3LGA A;  1PQF A;  3SUJ A;  4FER A;  5FTM A; 
#chains in the Genus database with same CATH homology
 1PQE A;  3BQB A;  1O54 A;  2PJH B;  5C1B A;  2A68 D;  2R93 A;  2R92 A;  2R7Z A;  1ZC1 A;  3QQ8 A;  5D6W A;  4KOD A;  5T5M D;  4AON B;  2QQR A;  1PYU B;  4KDI A;  2Q1C X;  1R7R A;  5D6Y A;  1I9G A;  1TWA A;  2VPY A;  4AQ7 A;  1Y1V A;  5EPP A;  1Y4Z A;  1G8K A;  1EU1 A;  1PT0 A;  1I3Q A;  2YUJ A;  3TIW A;  1I50 A;  3LHD A;  1E18 A;  1E60 A;  1FDI A;  5C18 A;  2Q18 X;  3MB5 A;  4GA5 A;  1S3S A;  2PI8 A;  2JIR A;  5CCB A;  3ZGZ A;  4AZD A;  2JA5 A;  1PT1 A;  5CCX A;  1DMS A;  4KDL A;  2A6H D;  3PLX B;  5B6C A;  2Y0S A;  4AOK B;  3CZB A;  3TM7 B;  5D6X A;  2E7Z A;  3QC8 A;  4DMR A;  2GAE A;  3FKI A;  2PWY A;  1KQF A;  1UHE A;  2JA6 A;  1AW8 B;  3FPR A;  2Q1A X;  4NOH A;  3HU1 A;  1IW7 D;  2VPX A;  3HU2 A;  4ARC A;  4CRZ A;  1R27 A;  3QQ7 A;  2VPW A;  5DYI A;  1OGY A;  3GTQ A;  3QWZ A;  2YU9 A;  4RV0 A;  4D7Z B;  1Y5I A;  1FDO A;  2MM2 A;  1E61 A;  3CQZ A;  1WCM A;  2NAP A;  3HU3 A;  3FPU A;  1H0H A;  3O5A A;  2O5J D;  3CF2 A;  2B25 A;  1DMR A;  5EQJ B;  1G8J A;  5FTN A;  2MM0 A;  2AE0 X;  3ZJU A;  1SFO A;  3FPT A;  2Q19 X;  2V3V A;  2JIQ A;  4KLN A;  4CS0 A;  2VUM A;  1KQG A;  1VC3 B;  2NVX A;  5DYG A;  4QIW A;  2B63 A;  2BE5 D;  2V45 A;  1PYQ A;  2A6E D;  2JIP A;  1QDN A;  3ZJV A;  4FIB A;  3GTL A;  1SIW A;  2XDP A;  3GTP A;  2E2I A;  1UHD A;  1SMY D;  2JIO A;  2WB1 A;  2G5D A;  2JA7 A;  1TWG A;  2JIM A;  2PMZ A;  5GLF A;  2GFA A;  2G6G A;  2KI8 A;  2KY9 A;  2PJJ A;  2Q1D X;  1H5N A;  1TWC A;  2NYA A;  2YVL A;  1CZ4 A;  4AYB A;  5ERG B;  3GTM A;  5FTJ A;  3IR5 A;  3GTO A;  3IR6 A;  1TWH A;  1R9T A;  4UC4 A;  4GA6 A;  2PNW A;  3OUG A;  1YLE A;  2WAQ A;  2CW0 D;  1Y1W A;  1TWF A;  2A69 D;  2NVY A;  5CD1 A;  4CQN A;  3ZJT A;  1QCS A;  5FTL A;  2PIC A;  3GTG A;  1E5V A;  1PPY A;  2QQS A;  4AS1 A;  3DMR A;  3HKZ A;  2GF7 A;  1E32 A;  3H0G A;  5T5I D;  4C2M A;  1Q16 A;  2C45 A;  3GTJ A;  2E2H A;  4KO8 A;  1CZ5 A;  1WLF A;  2IV2 X;  3ML1 A;  3IR7 A;  2DMR A;  1TMO A;  1PQH A;  3GTK A;  2LW6 A;  2VPZ A;  1CR5 A;  2JV2 A;  1YNJ D;  1YNN D;  2EEO B;  4CRY G;  1K83 A;  5FTK A;  4ARI A;  4AAY A;  1AA6 A;  1ZYR D;  3LGA A;  1PQF A;  5FTM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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