3QQ8A

Crystal structure of p97-n in complex with faf1-ubx
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
177
structure length
177
Chain Sequence
DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (11-14)TVIII1 (16-19)TI3 (35-38)S4 (66-73)S1 (25-29)TI2 (22-25)TIV2 (61-64)TI4 (74-77)TIV1 (31-34)TI'1 (62-65)S2 (38-41)AH1 (43-49)TII2 (95-98)S3 (55-60)AH2 (86-92)S5 (81-84)TII1 (52-55)TII3 (139-142)AH3 (130-139)TI5 (78-81)S6 (98-104)TIV3 (168-171)TVIb1 (170-173)TI6 (105-108)S9 (150-156)S7 (113-118)TVIII2 (118-121)TI7 (120-123)3H1 (123-125)TII'1 (156-159)S10 (159-169)S11 (173-175)S8 (145-147)Updating...
connected with : NaN
molecule tags Transport protein/apoptosis
source organism Homo sapiens
publication title Hierarchical Binding of Cofactors to the AAA ATPase p97.
pubmed doi rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 47
structure length 177
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qq8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qq8A02
3DMRA 1K83A 4CRZA 2NVYA 1PQHA 5DYGA 2JIPA 3O5AA 1E18A 3QQ7A 3GTLA 1UHEA 1H0HA 3CQZA 5DYIA 5FTKA 2B63A 3QC8A 1I50A 3GTOA 5T5ID 1CZ4A 1TMOA 5FTJA 1AW8B 5C1BA 1H5NA 3GTQA 2YUJA 1TWCA 5EPPA 2JV2A 2KI8A 2JIMA 5FTNA 2E2HA 3CF2A 2YU9A 4GA6A 1PT0A 3IR7A 4AAYA 1QCSA 3GTJA 1G8KA 4KDLA 1OGYA 1FDOA 3GTPA 4C2MA 2V3VA 3ML1A 4KO8A 4AYBA 2R92A 2R7ZA 1Y1WA 2NYAA 2V45A 5FTMA 3TM7B 2IV2X 1PYQA 3HU3A 4QIWA 4GA5A 3TIWA 2VUMA 2E2IA 1R27A 1WLFA 2VPZA 2WAQA 4AOKB 5B6CA 3HKZA 1Q16A 2JA6A 1FDIA 1UHDA 3HU2A 1DMSA 2JA7A 3GTKA 1PPYA 1VC3B 4AZDA 4DMRA 1E5VA 2VPYA 2NAPA 5C18A 2E7ZA 3H0GA 4RV0A 3GTMA 1CZ5A 1DMRA 3GTGA 1IW7D 1TWGA 5FTLA 1AA6A 3HU1A 1ZC1A 1Y1VA 5T5MD 4KDIA 1KQGA 1KQFA 4CS0A 2JA5A 1E32A 3PLXB 1WCMA 1TWAA 2VPXA 2JIQA 5GLFA 2DMRA 1TWHA 2R93A 1PT1A 3QQ8A 4AONB 2VPWA 3IR6A 3IR5A 1SIWA 3QWZA 3FKIA 1CR5A 1SFOA 4KODA 2PJHB 4CRYG 1QDNA 1YLEA 1PYUB 2PMZA 2JIRA 1TWFA 1R9TA 1G8JA 1I3QA 1E60A 2NVXA 2JIOA 3OUGA 1PQFA 2C45A 1Y5IA 1Y4ZA 1S3SA 2Y0SA 4KLNA 1E61A 1EU1A 2WB1A 4D7ZB 1PQEA 1R7RA 2EEOB
chains in the Genus database with same CATH superfamily
3DMRA 1K83A 4CRZA 2NVYA 1PQHA 5DYGA 2JIPA 3X2JA 3O5AA 1OA9A 1E18A 3QQ7A 3GTLA 1UHEA 1H0HA 3CQZA 5DYIA 5FTKA 5GM9A 2B63A 3QC8A 3M3GA 2BE5D 1I50A 4FIBA 3GTOA 5T5ID 2O5JD 2PNWA 2YVLA 1CZ4A 1WC2A 1TMOA 1OA7A 5FTJA 3X2HA 4ARCA 1AW8B 5C1BA 1H5NA 4ENGA 3GTQA 2YUJA 2MM2A 1L8FA 1TWCA 5EPPA 2JV2A 2KI8A 4AS1A 3X2OA 2JIMA 5FTNA 1BW4A 2E2HA 5GLYA 3FPTA 3CF2A 3ZJUA 2GAEA 2Q19X 2YU9A 2QQSA 4FG2A 5CCXA 1HD5A 4GA6A 1O54A 1PT0A 3IR7A 4AAYA 1QCSA 3CZBA 1YNND 3GTJA 1G8KA 2LW6A 2Q18X 4KDLA 3LHDA 1OGYA 1FDOA 2G5DA 3GTPA 3FPRA 4FG4A 4C2MA 2V3VA 4L48A 3ML1A 4KO8A 4AYBA 2GF7A 3ENGA 2R92A 2R7ZA 1Y1WA 1N10A 2NYAA 2V45A 5FTMA 3TM7B 3X2KA 3MB5A 2IV2X 1PYQA 3HU3A 3X2GA 2PI8A 4QIWA 4GA5A 3SULA 3TIWA 2VUMA 3X2MA 2E2IA 2KY9A 5CCBA 4ARIA 4FFTA 1R27A 1WLFA 2VPZA 2KQAA 2WAQA 5H4UA 4AOKB 3HKZA 1Q16A 5B6CA 2JA6A 1FDIA 1UHDA 3HU2A 1DMSA 2JA7A 2Q1AX 2CW0D 3GTKA 2Q1DX 5ERGB 1PPYA 1VC3B 2PWYA 4AZDA 2B25A 4DMRA 2A6HD 1E5VA 2VPYA 3LGAA 2NAPA 5C18A 2E7ZA 3H0GA 2A69D 4RV0A 3GTMA 1CZ5A 1DMRA 3GTGA 1IW7D 3ZJVA 1TWGA 2XDPA 5FTLA 1AA6A 3FPUA 3HU1A 1ZC1A 2PJJA 1BW3A 2PICA 4AQ7A 1Y1VA 4ZM7A 5T5MD 4KDIA 1KQGA 1KQFA 4UC4A 4JP6A 4CS0A 2BH0A 2JA5A 1E32A 3PLXB 5GLXA 1WCMA 4CQNA 3X2PA 5EQJB 1TWAA 3X2IA 2VPXA 1SMYD 3SUMA 2JIQA 2ENGA 4JJOA 5GLFA 2DMRA 1TWHA 1YNJD 3SUKA 2R93A 3BQBA 1PT1A 3QQ8A 4FERA 4AONB 2VPWA 3IR6A 3IR5A 2GFAA 3X2LA 3X2NA 1SIWA 3QWZA 3FKIA 4JP7A 2MM0A 5D6XA 2A68D 1CR5A 1SFOA 2Q1CX 4AVRA 4KODA 2PJHB 4CRYG 2G6GA 1QDNA 1YLEA 2QQRA 2HCZX 1PYUB 5D6YA 2PMZA 1ZYRD 1TWFA 2JIRA 4NOHA 1R9TA 1I9GA 1G8JA 3D30A 1E60A 1I3QA 2NVXA 2JIOA 3OUGA 1PQFA 2C45A 1Y5IA 4JS7A 2A6ED 1Y4ZA 3SUJA 3ZGZA 1S3SA 2Y0SA 4JCWA 5CD1A 5D6WA 4KLNA 1E61A 1EU1A 2WB1A 4D7ZB 3ZJTA 1PQEA 1R7RA 2EEOB 2AE0X
chains in the Genus database with same CATH topology
3DMRA 1K83A 4CRZA 2NVYA 1PQHA 5DYGA 2JIPA 3O5AA 1E18A 3QQ7A 3GTLA 1UHEA 1H0HA 3CQZA 5DYIA 5FTKA 2B63A 3QC8A 2BE5D 1I50A 4FIBA 3GTOA 5T5ID 2O5JD 2PNWA 2YVLA 1CZ4A 1TMOA 5FTJA 4ARCA 1AW8B 5C1BA 1H5NA 3GTQA 2YUJA 2MM2A 1TWCA 5EPPA 2JV2A 2KI8A 4AS1A 2JIMA 5FTNA 2E2HA 3FPTA 3CF2A 3ZJUA 2GAEA 2Q19X 2YU9A 2QQSA 5CCXA 4GA6A 1PT0A 3IR7A 4AAYA 1QCSA 3CZBA 1YNND 3GTJA 1G8KA 2LW6A 2Q18X 4KDLA 3LHDA 1OGYA 1FDOA 2G5DA 3GTPA 3FPRA 4C2MA 2V3VA 3ML1A 4KO8A 4AYBA 2GF7A 2R92A 2R7ZA 1Y1WA 2NYAA 2V45A 5FTMA 3MB5A 3TM7B 2IV2X 1PYQA 3HU3A 2PI8A 4QIWA 4GA5A 3TIWA 2VUMA 2KY9A 2E2IA 5CCBA 4ARIA 1R27A 1WLFA 2VPZA 2WAQA 4AOKB 5B6CA 1O54A 3HKZA 1Q16A 2JA6A 1FDIA 1UHDA 3HU2A 1DMSA 2JA7A 2Q1AX 2CW0D 3GTKA 2Q1DX 5ERGB 1PPYA 1VC3B 2PWYA 4AZDA 2B25A 4DMRA 2A6HD 1E5VA 2VPYA 3LGAA 2NAPA 5C18A 2E7ZA 3H0GA 2A69D 4RV0A 3GTMA 1CZ5A 1DMRA 3GTGA 1IW7D 3ZJVA 1TWGA 2XDPA 5FTLA 1AA6A 3FPUA 3HU1A 1ZC1A 2PJJA 2PICA 4AQ7A 1Y1VA 5T5MD 4KDIA 1KQGA 1KQFA 4UC4A 4CS0A 2JA5A 1E32A 3PLXB 1WCMA 4CQNA 5EQJB 1TWAA 2VPXA 1SMYD 2JIQA 5GLFA 2DMRA 1TWHA 1YNJD 2R93A 3BQBA 1PT1A 3QQ8A 4AONB 2VPWA 3IR6A 3IR5A 2GFAA 1SIWA 3QWZA 3FKIA 2MM0A 5D6XA 2A68D 1CR5A 1SFOA 2Q1CX 4KODA 2PJHB 4CRYG 2G6GA 1QDNA 1YLEA 2QQRA 5D6YA 1PYUB 2PMZA 1ZYRD 1TWFA 2JIRA 4NOHA 1R9TA 1I9GA 1G8JA 1I3QA 1E60A 2NVXA 2JIOA 3OUGA 1PQFA 2C45A 1Y5IA 3ZGZA 2A6ED 1Y4ZA 1S3SA 2Y0SA 5CD1A 5D6WA 4KLNA 1E61A 1EU1A 2WB1A 4D7ZB 3ZJTA 1PQEA 1R7RA 2EEOB 2AE0X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DMR A;  1K83 A;  4CRZ A;  2NVY A;  1PQH A;  5DYG A;  2JIP A;  3O5A A;  1E18 A;  3QQ7 A;  3GTL A;  1UHE A;  1H0H A;  3CQZ A;  5DYI A;  5FTK A;  2B63 A;  3QC8 A;  1I50 A;  3GTO A;  5T5I D;  1CZ4 A;  1TMO A;  5FTJ A;  1AW8 B;  5C1B A;  1H5N A;  3GTQ A;  2YUJ A;  1TWC A;  5EPP A;  2JV2 A;  2KI8 A;  2JIM A;  5FTN A;  2E2H A;  3CF2 A;  2YU9 A;  4GA6 A;  1PT0 A;  3IR7 A;  4AAY A;  1QCS A;  3GTJ A;  1G8K A;  4KDL A;  1OGY A;  1FDO A;  3GTP A;  4C2M A;  2V3V A;  3ML1 A;  4KO8 A;  4AYB A;  2R92 A;  2R7Z A;  1Y1W A;  2NYA A;  2V45 A;  5FTM A;  3TM7 B;  2IV2 X;  1PYQ A;  3HU3 A;  4QIW A;  4GA5 A;  3TIW A;  2VUM A;  2E2I A;  1R27 A;  1WLF A;  2VPZ A;  2WAQ A;  4AOK B;  5B6C A;  3HKZ A;  1Q16 A;  2JA6 A;  1FDI A;  1UHD A;  3HU2 A;  1DMS A;  2JA7 A;  3GTK A;  1PPY A;  1VC3 B;  4AZD A;  4DMR A;  1E5V A;  2VPY A;  2NAP A;  5C18 A;  2E7Z A;  3H0G A;  4RV0 A;  3GTM A;  1CZ5 A;  1DMR A;  3GTG A;  1IW7 D;  1TWG A;  5FTL A;  1AA6 A;  3HU1 A;  1ZC1 A;  1Y1V A;  5T5M D;  4KDI A;  1KQG A;  1KQF A;  4CS0 A;  2JA5 A;  1E32 A;  3PLX B;  1WCM A;  1TWA A;  2VPX A;  2JIQ A;  5GLF A;  2DMR A;  1TWH A;  2R93 A;  1PT1 A;  3QQ8 A;  4AON B;  2VPW A;  3IR6 A;  3IR5 A;  1SIW A;  3QWZ A;  3FKI A;  1CR5 A;  1SFO A;  4KOD A;  2PJH B;  4CRY G;  1QDN A;  1YLE A;  1PYU B;  2PMZ A;  2JIR A;  1TWF A;  1R9T A;  1G8J A;  1I3Q A;  1E60 A;  2NVX A;  2JIO A;  3OUG A;  1PQF A;  2C45 A;  1Y5I A;  1Y4Z A;  1S3S A;  2Y0S A;  4KLN A;  1E61 A;  1EU1 A;  2WB1 A;  4D7Z B;  1PQE A;  1R7R A;  2EEO B; 
#chains in the Genus database with same CATH topology
 3DMR A;  1K83 A;  4CRZ A;  2NVY A;  1PQH A;  5DYG A;  2JIP A;  3X2J A;  3O5A A;  1OA9 A;  1E18 A;  3QQ7 A;  3GTL A;  1UHE A;  1H0H A;  3CQZ A;  5DYI A;  5FTK A;  5GM9 A;  2B63 A;  3QC8 A;  3M3G A;  2BE5 D;  1I50 A;  4FIB A;  3GTO A;  5T5I D;  2O5J D;  2PNW A;  2YVL A;  1CZ4 A;  1WC2 A;  1TMO A;  1OA7 A;  5FTJ A;  3X2H A;  4ARC A;  1AW8 B;  5C1B A;  1H5N A;  4ENG A;  3GTQ A;  2YUJ A;  2MM2 A;  1L8F A;  1TWC A;  5EPP A;  2JV2 A;  2KI8 A;  4AS1 A;  3X2O A;  2JIM A;  5FTN A;  1BW4 A;  2E2H A;  5GLY A;  3FPT A;  3CF2 A;  3ZJU A;  2GAE A;  2Q19 X;  2YU9 A;  2QQS A;  4FG2 A;  5CCX A;  1HD5 A;  4GA6 A;  1O54 A;  1PT0 A;  3IR7 A;  4AAY A;  1QCS A;  3CZB A;  1YNN D;  3GTJ A;  1G8K A;  2LW6 A;  2Q18 X;  4KDL A;  3LHD A;  1OGY A;  1FDO A;  2G5D A;  3GTP A;  3FPR A;  4FG4 A;  4C2M A;  2V3V A;  4L48 A;  3ML1 A;  4KO8 A;  4AYB A;  2GF7 A;  3ENG A;  2R92 A;  2R7Z A;  1Y1W A;  1N10 A;  2NYA A;  2V45 A;  5FTM A;  3TM7 B;  3X2K A;  3MB5 A;  2IV2 X;  1PYQ A;  3HU3 A;  3X2G A;  2PI8 A;  4QIW A;  4GA5 A;  3SUL A;  3TIW A;  2VUM A;  3X2M A;  2E2I A;  2KY9 A;  5CCB A;  4ARI A;  4FFT A;  1R27 A;  1WLF A;  2VPZ A;  2KQA A;  2WAQ A;  5H4U A;  4AOK B;  3HKZ A;  1Q16 A;  5B6C A;  2JA6 A;  1FDI A;  1UHD A;  3HU2 A;  1DMS A;  2JA7 A;  2Q1A X;  2CW0 D;  3GTK A;  2Q1D X;  5ERG B;  1PPY A;  1VC3 B;  2PWY A;  4AZD A;  2B25 A;  4DMR A;  2A6H D;  1E5V A;  2VPY A;  3LGA A;  2NAP A;  5C18 A;  2E7Z A;  3H0G A;  2A69 D;  4RV0 A;  3GTM A;  1CZ5 A;  1DMR A;  3GTG A;  1IW7 D;  3ZJV A;  1TWG A;  2XDP A;  5FTL A;  1AA6 A;  3FPU A;  3HU1 A;  1ZC1 A;  2PJJ A;  1BW3 A;  2PIC A;  4AQ7 A;  1Y1V A;  4ZM7 A;  5T5M D;  4KDI A;  1KQG A;  1KQF A;  4UC4 A;  4JP6 A;  4CS0 A;  2BH0 A;  2JA5 A;  1E32 A;  3PLX B;  5GLX A;  1WCM A;  4CQN A;  3X2P A;  5EQJ B;  1TWA A;  3X2I A;  2VPX A;  1SMY D;  3SUM A;  2JIQ A;  2ENG A;  4JJO A;  5GLF A;  2DMR A;  1TWH A;  1YNJ D;  3SUK A;  2R93 A;  3BQB A;  1PT1 A;  3QQ8 A;  4FER A;  4AON B;  2VPW A;  3IR6 A;  3IR5 A;  2GFA A;  3X2L A;  3X2N A;  1SIW A;  3QWZ A;  3FKI A;  4JP7 A;  2MM0 A;  5D6X A;  2A68 D;  1CR5 A;  1SFO A;  2Q1C X;  4AVR A;  4KOD A;  2PJH B;  4CRY G;  2G6G A;  1QDN A;  1YLE A;  2QQR A;  2HCZ X;  1PYU B;  5D6Y A;  2PMZ A;  1ZYR D;  1TWF A;  2JIR A;  4NOH A;  1R9T A;  1I9G A;  1G8J A;  3D30 A;  1E60 A;  1I3Q A;  2NVX A;  2JIO A;  3OUG A;  1PQF A;  2C45 A;  1Y5I A;  4JS7 A;  2A6E D;  1Y4Z A;  3SUJ A;  3ZGZ A;  1S3S A;  2Y0S A;  4JCW A;  5CD1 A;  5D6W A;  4KLN A;  1E61 A;  1EU1 A;  2WB1 A;  4D7Z B;  3ZJT A;  1PQE A;  1R7R A;  2EEO B;  2AE0 X; 
#chains in the Genus database with same CATH homology
 3DMR A;  1K83 A;  4CRZ A;  2NVY A;  1PQH A;  5DYG A;  2JIP A;  3O5A A;  1E18 A;  3QQ7 A;  3GTL A;  1UHE A;  1H0H A;  3CQZ A;  5DYI A;  5FTK A;  2B63 A;  3QC8 A;  2BE5 D;  1I50 A;  4FIB A;  3GTO A;  5T5I D;  2O5J D;  2PNW A;  2YVL A;  1CZ4 A;  1TMO A;  5FTJ A;  4ARC A;  1AW8 B;  5C1B A;  1H5N A;  3GTQ A;  2YUJ A;  2MM2 A;  1TWC A;  5EPP A;  2JV2 A;  2KI8 A;  4AS1 A;  2JIM A;  5FTN A;  2E2H A;  3FPT A;  3CF2 A;  3ZJU A;  2GAE A;  2Q19 X;  2YU9 A;  2QQS A;  5CCX A;  4GA6 A;  1PT0 A;  3IR7 A;  4AAY A;  1QCS A;  3CZB A;  1YNN D;  3GTJ A;  1G8K A;  2LW6 A;  2Q18 X;  4KDL A;  3LHD A;  1OGY A;  1FDO A;  2G5D A;  3GTP A;  3FPR A;  4C2M A;  2V3V A;  3ML1 A;  4KO8 A;  4AYB A;  2GF7 A;  2R92 A;  2R7Z A;  1Y1W A;  2NYA A;  2V45 A;  5FTM A;  3MB5 A;  3TM7 B;  2IV2 X;  1PYQ A;  3HU3 A;  2PI8 A;  4QIW A;  4GA5 A;  3TIW A;  2VUM A;  2KY9 A;  2E2I A;  5CCB A;  4ARI A;  1R27 A;  1WLF A;  2VPZ A;  2WAQ A;  4AOK B;  5B6C A;  1O54 A;  3HKZ A;  1Q16 A;  2JA6 A;  1FDI A;  1UHD A;  3HU2 A;  1DMS A;  2JA7 A;  2Q1A X;  2CW0 D;  3GTK A;  2Q1D X;  5ERG B;  1PPY A;  1VC3 B;  2PWY A;  4AZD A;  2B25 A;  4DMR A;  2A6H D;  1E5V A;  2VPY A;  3LGA A;  2NAP A;  5C18 A;  2E7Z A;  3H0G A;  2A69 D;  4RV0 A;  3GTM A;  1CZ5 A;  1DMR A;  3GTG A;  1IW7 D;  3ZJV A;  1TWG A;  2XDP A;  5FTL A;  1AA6 A;  3FPU A;  3HU1 A;  1ZC1 A;  2PJJ A;  2PIC A;  4AQ7 A;  1Y1V A;  5T5M D;  4KDI A;  1KQG A;  1KQF A;  4UC4 A;  4CS0 A;  2JA5 A;  1E32 A;  3PLX B;  1WCM A;  4CQN A;  5EQJ B;  1TWA A;  2VPX A;  1SMY D;  2JIQ A;  5GLF A;  2DMR A;  1TWH A;  1YNJ D;  2R93 A;  3BQB A;  1PT1 A;  3QQ8 A;  4AON B;  2VPW A;  3IR6 A;  3IR5 A;  2GFA A;  1SIW A;  3QWZ A;  3FKI A;  2MM0 A;  5D6X A;  2A68 D;  1CR5 A;  1SFO A;  2Q1C X;  4KOD A;  2PJH B;  4CRY G;  2G6G A;  1QDN A;  1YLE A;  2QQR A;  5D6Y A;  1PYU B;  2PMZ A;  1ZYR D;  1TWF A;  2JIR A;  4NOH A;  1R9T A;  1I9G A;  1G8J A;  1I3Q A;  1E60 A;  2NVX A;  2JIO A;  3OUG A;  1PQF A;  2C45 A;  1Y5I A;  3ZGZ A;  2A6E D;  1Y4Z A;  1S3S A;  2Y0S A;  5CD1 A;  5D6W A;  4KLN A;  1E61 A;  1EU1 A;  2WB1 A;  4D7Z B;  3ZJT A;  1PQE A;  1R7R A;  2EEO B;  2AE0 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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