3QWZA

Crystal structure of faf1 ubx-p97n-domain complex
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
177
structure length
175
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (78-81)S5 (81-84)TVIII1 (31-34)TI1 (35-38)S2 (38-41)TIV4 (168-171)AH1 (43-49)TII3 (123-126)TII4 (147-150)S3 (55-60)TIV1 (61-65)S12 (173-176)S4 (66-73)TVIb1 (170-173)TI2 (74-77)AH2 (86-92)TI'1 (156-159)TIV2 (139-142)AH3 (130-139)TII2 (95-98)S11 (167-169)S6 (98-104)S7 (113-115)TI4 (105-108)3H1 (120-122)S9 (150-153)S8 (144-147)TIV3 (155-158)TII1 (52-55)S10 (162-165)S1 (24-29)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Dissection of the interaction between FAF1 UBX and p97
rcsb
molecule keywords Transitional endoplasmic reticulum ATPase
total genus 48
structure length 175
sequence length 177
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qwzA01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qwzA02
1QDNA 1TWHA 3QQ8A 1E5VA 2B63A 3QC8A 1KQFA 1R7RA 2NYAA 1IW7D 4AYBA 1H0HA 2VPXA 4KDLA 1G8KA 3CQZA 4RV0A 5FTLA 3GTLA 1S3SA 5T5MD 3HU1A 1AA6A 3QWZA 3GTQA 2WAQA 1TMOA 1VC3B 4C2MA 2YUJA 4KLNA 1Y5IA 2V3VA 1PQHA 2Y0SA 2JIQA 1DMRA 1E18A 1R9TA 1E60A 4KODA 1WLFA 5FTJA 4DMRA 3IR5A 1AW8B 4GA5A 4AONB 2JV2A 3DMRA 2EEOB 1Y1WA 2V45A 2YU9A 1PYUB 5DYGA 3IR7A 2DMRA 1PYQA 3HKZA 1H5NA 2JA6A 2E2HA 2JA7A 1KQGA 2JIOA 1TWGA 2R93A 3FKIA 2NVXA 2JA5A 1PQFA 2E7ZA 5DYIA 4CS0A 5T5ID 1CZ5A 5FTNA 2VPYA 4QIWA 3GTGA 2R92A 1I50A 1K83A 5GLFA 2VPWA 2KI8A 1PT1A 5B6CA 1CZ4A 4AOKB 1Y4ZA 2VPZA 1DMSA 1EU1A 3O5AA 3H0GA 1TWAA 4AZDA 1SFOA 1UHEA 5C18A 4AAYA 1ZC1A 1FDOA 2JIRA 3GTJA 1E32A 1WCMA 2C45A 1SIWA 3GTOA 4CRYG 1TWCA 2PJHB 2R7ZA 3GTKA 3PLXB 1TWFA 2VUMA 3OUGA 1UHDA 2PMZA 4D7ZB 1PT0A 1PQEA 5EPPA 3TM7B 2NVYA 1I3QA 3TIWA 1QCSA 1G8JA 1YLEA 3ML1A 3IR6A 2E2IA 1Y1VA 1OGYA 4CRZA 3HU3A 3QQ7A 4KDIA 1CR5A 2JIMA 4KO8A 2IV2X 1E61A 3GTMA 1R27A 3HU2A 5FTKA 2JIPA 1PPYA 3CF2A 5C1BA 1Q16A 1FDIA 2NAPA 2WB1A 3GTPA 4GA6A 5FTMA
chains in the Genus database with same CATH superfamily
1QDNA 1TWHA 3QQ8A 2A69D 3X2KA 1E5VA 2QQRA 2G5DA 3QC8A 1KQFA 2B63A 1R7RA 2A6HD 3FPTA 2NYAA 1IW7D 2ENGA 4AYBA 2O5JD 1H0HA 2VPXA 4KDLA 1G8KA 3CQZA 4RV0A 5FTLA 3GTLA 2G6GA 3X2GA 2GFAA 4L48A 2BH0A 1S3SA 4JCWA 5T5MD 3SUKA 2MM0A 3HU1A 1AA6A 3QWZA 3GTQA 1O54A 2WAQA 1TMOA 1VC3B 3FPUA 2YUJA 4C2MA 5H4UA 4ARCA 3LGAA 4KLNA 2BE5D 1Y5IA 2V3VA 1PQHA 2Y0SA 4NOHA 2JIQA 1DMRA 1E18A 1R9TA 5CCBA 3X2IA 1E60A 4AS1A 4KODA 3ZJTA 1WLFA 5FTJA 4DMRA 3ZGZA 3IR5A 2Q1AX 2PWYA 1AW8B 4ARIA 4GA5A 4AONB 2JV2A 3DMRA 1WC2A 2EEOB 1Y1WA 2V45A 2Q1CX 2CW0D 2Q18X 1BW4A 5EQJB 2YU9A 4JP7A 1PYUB 3BQBA 5DYGA 3IR7A 3X2MA 2DMRA 1PYQA 3HKZA 1H5NA 2JA6A 2E2HA 2JA7A 2PI8A 1KQGA 1N10A 2JIOA 2PJJA 1BW3A 1TWGA 3X2NA 3FPRA 2Q1DX 2R93A 3FKIA 4UC4A 2NVXA 2JA5A 1PQFA 2E7ZA 5DYIA 4CS0A 5T5ID 1CZ5A 5FTNA 2VPYA 5CCXA 1OA7A 4QIWA 3GTGA 4ZM7A 2R92A 1SMYD 1I50A 1K83A 2QQSA 5GLFA 1HD5A 3CZBA 2VPWA 2KI8A 1PT1A 4FIBA 5B6CA 1CZ4A 4AOKB 1Y4ZA 2XDPA 2VPZA 1DMSA 2PNWA 1EU1A 3X2JA 5CD1A 3O5AA 3SUMA 3H0GA 1TWAA 4AZDA 1SFOA 3ZJVA 1UHEA 5C18A 4AAYA 3X2OA 4FG2A 1ZC1A 1FDOA 2JIRA 3GTJA 1E32A 1WCMA 1YNND 2C45A 1SIWA 3GTOA 3X2HA 3ENGA 4CRYG 1TWCA 2PJHB 2R7ZA 3LHDA 3X2LA 3GTKA 3ZJUA 3PLXB 1TWFA 3M3GA 2VUMA 4JP6A 1OA9A 3OUGA 4FERA 1UHDA 1ZYRD 2PMZA 3SULA 4D7ZB 1I9GA 2KY9A 2KQAA 5GLYA 2HCZX 5D6XA 1PT0A 3D30A 1PQEA 5EPPA 3TM7B 2NVYA 5FTMA 5D6WA 1I3QA 4FG4A 3TIWA 1QCSA 1G8JA 4FFTA 1YLEA 3ML1A 3IR6A 2E2IA 1Y1VA 1OGYA 4CRZA 3HU3A 4ENGA 2GF7A 2B25A 3QQ7A 4KDIA 1CR5A 4JJOA 2JIMA 2LW6A 2AE0X 4KO8A 2PICA 2IV2X 3MB5A 1E61A 2YVLA 4AVRA 3GTMA 1R27A 3HU2A 2GAEA 2A6ED 5GLXA 5ERGB 2MM2A 5FTKA 5D6YA 4CQNA 2JIPA 1PPYA 3CF2A 3SUJA 5C1BA 1Q16A 1FDIA 2Q19X 4JS7A 4AQ7A 2NAPA 2WB1A 3GTPA 5GM9A 4GA6A 2A68D 1YNJD 1L8FA 3X2PA
chains in the Genus database with same CATH topology
1QDNA 1TWHA 3QQ8A 2A69D 2QQRA 1E5VA 2G5DA 3QC8A 1KQFA 2B63A 1R7RA 2A6HD 3FPTA 2NYAA 1IW7D 4AYBA 2O5JD 1H0HA 2VPXA 4KDLA 1G8KA 3CQZA 4RV0A 5FTLA 3GTLA 2G6GA 2GFAA 1S3SA 5T5MD 2MM0A 3HU1A 1AA6A 3QWZA 3GTQA 1O54A 2WAQA 1TMOA 1VC3B 3FPUA 2YUJA 4C2MA 4ARCA 3LGAA 4KLNA 2BE5D 1Y5IA 2V3VA 1PQHA 2Y0SA 4NOHA 2JIQA 1DMRA 1E18A 1R9TA 5CCBA 1E60A 4AS1A 4KODA 3ZJTA 1WLFA 5FTJA 4DMRA 3ZGZA 3IR5A 2Q1AX 2PWYA 1AW8B 4ARIA 4GA5A 4AONB 2JV2A 3DMRA 2EEOB 1Y1WA 2V45A 2Q1CX 2CW0D 2Q18X 5EQJB 2YU9A 3BQBA 1PYUB 5DYGA 3IR7A 2DMRA 1PYQA 3HKZA 1H5NA 2JA6A 2E2HA 2JA7A 2PI8A 1KQGA 2JIOA 2PJJA 1TWGA 3FPRA 2Q1DX 2R93A 3FKIA 4UC4A 2NVXA 2JA5A 1PQFA 2E7ZA 5DYIA 4CS0A 5T5ID 1CZ5A 5FTNA 2VPYA 5CCXA 4QIWA 3GTGA 2R92A 1SMYD 1I50A 1K83A 2QQSA 5GLFA 3CZBA 2VPWA 2KI8A 1PT1A 4FIBA 5B6CA 1CZ4A 4AOKB 1Y4ZA 2XDPA 2VPZA 1DMSA 2PNWA 1EU1A 5CD1A 3O5AA 3H0GA 1TWAA 4AZDA 1SFOA 3ZJVA 1UHEA 5C18A 4AAYA 1ZC1A 1FDOA 2JIRA 3GTJA 1E32A 1WCMA 1YNND 2C45A 1SIWA 3GTOA 4CRYG 1TWCA 2PJHB 2R7ZA 3LHDA 3GTKA 3ZJUA 3PLXB 1TWFA 2VUMA 3OUGA 1UHDA 1ZYRD 2PMZA 4D7ZB 2KY9A 1I9GA 5D6XA 1PT0A 1PQEA 5EPPA 3TM7B 2NVYA 5FTMA 5D6WA 1I3QA 3TIWA 1QCSA 1G8JA 1YLEA 3ML1A 3IR6A 2E2IA 1Y1VA 1OGYA 4CRZA 3HU3A 2GF7A 2B25A 3QQ7A 4KDIA 1CR5A 2JIMA 2LW6A 2AE0X 4KO8A 2PICA 2IV2X 3MB5A 1E61A 2YVLA 3GTMA 5ERGB 1R27A 3HU2A 2GAEA 2A6ED 2MM2A 5FTKA 5D6YA 4CQNA 2JIPA 1PPYA 3CF2A 5C1BA 1Q16A 1FDIA 2Q19X 4AQ7A 2NAPA 2WB1A 3GTPA 4GA6A 2A68D 1YNJD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QDN A;  1TWH A;  3QQ8 A;  1E5V A;  2B63 A;  3QC8 A;  1KQF A;  1R7R A;  2NYA A;  1IW7 D;  4AYB A;  1H0H A;  2VPX A;  4KDL A;  1G8K A;  3CQZ A;  4RV0 A;  5FTL A;  3GTL A;  1S3S A;  5T5M D;  3HU1 A;  1AA6 A;  3QWZ A;  3GTQ A;  2WAQ A;  1TMO A;  1VC3 B;  4C2M A;  2YUJ A;  4KLN A;  1Y5I A;  2V3V A;  1PQH A;  2Y0S A;  2JIQ A;  1DMR A;  1E18 A;  1R9T A;  1E60 A;  4KOD A;  1WLF A;  5FTJ A;  4DMR A;  3IR5 A;  1AW8 B;  4GA5 A;  4AON B;  2JV2 A;  3DMR A;  2EEO B;  1Y1W A;  2V45 A;  2YU9 A;  1PYU B;  5DYG A;  3IR7 A;  2DMR A;  1PYQ A;  3HKZ A;  1H5N A;  2JA6 A;  2E2H A;  2JA7 A;  1KQG A;  2JIO A;  1TWG A;  2R93 A;  3FKI A;  2NVX A;  2JA5 A;  1PQF A;  2E7Z A;  5DYI A;  4CS0 A;  5T5I D;  1CZ5 A;  5FTN A;  2VPY A;  4QIW A;  3GTG A;  2R92 A;  1I50 A;  1K83 A;  5GLF A;  2VPW A;  2KI8 A;  1PT1 A;  5B6C A;  1CZ4 A;  4AOK B;  1Y4Z A;  2VPZ A;  1DMS A;  1EU1 A;  3O5A A;  3H0G A;  1TWA A;  4AZD A;  1SFO A;  1UHE A;  5C18 A;  4AAY A;  1ZC1 A;  1FDO A;  2JIR A;  3GTJ A;  1E32 A;  1WCM A;  2C45 A;  1SIW A;  3GTO A;  4CRY G;  1TWC A;  2PJH B;  2R7Z A;  3GTK A;  3PLX B;  1TWF A;  2VUM A;  3OUG A;  1UHD A;  2PMZ A;  4D7Z B;  1PT0 A;  1PQE A;  5EPP A;  3TM7 B;  2NVY A;  1I3Q A;  3TIW A;  1QCS A;  1G8J A;  1YLE A;  3ML1 A;  3IR6 A;  2E2I A;  1Y1V A;  1OGY A;  4CRZ A;  3HU3 A;  3QQ7 A;  4KDI A;  1CR5 A;  2JIM A;  4KO8 A;  2IV2 X;  1E61 A;  3GTM A;  1R27 A;  3HU2 A;  5FTK A;  2JIP A;  1PPY A;  3CF2 A;  5C1B A;  1Q16 A;  1FDI A;  2NAP A;  2WB1 A;  3GTP A;  4GA6 A;  5FTM A; 
#chains in the Genus database with same CATH topology
 1QDN A;  1TWH A;  3QQ8 A;  2A69 D;  3X2K A;  1E5V A;  2QQR A;  2G5D A;  3QC8 A;  1KQF A;  2B63 A;  1R7R A;  2A6H D;  3FPT A;  2NYA A;  1IW7 D;  2ENG A;  4AYB A;  2O5J D;  1H0H A;  2VPX A;  4KDL A;  1G8K A;  3CQZ A;  4RV0 A;  5FTL A;  3GTL A;  2G6G A;  3X2G A;  2GFA A;  4L48 A;  2BH0 A;  1S3S A;  4JCW A;  5T5M D;  3SUK A;  2MM0 A;  3HU1 A;  1AA6 A;  3QWZ A;  3GTQ A;  1O54 A;  2WAQ A;  1TMO A;  1VC3 B;  3FPU A;  2YUJ A;  4C2M A;  5H4U A;  4ARC A;  3LGA A;  4KLN A;  2BE5 D;  1Y5I A;  2V3V A;  1PQH A;  2Y0S A;  4NOH A;  2JIQ A;  1DMR A;  1E18 A;  1R9T A;  5CCB A;  3X2I A;  1E60 A;  4AS1 A;  4KOD A;  3ZJT A;  1WLF A;  5FTJ A;  4DMR A;  3ZGZ A;  3IR5 A;  2Q1A X;  2PWY A;  1AW8 B;  4ARI A;  4GA5 A;  4AON B;  2JV2 A;  3DMR A;  1WC2 A;  2EEO B;  1Y1W A;  2V45 A;  2Q1C X;  2CW0 D;  2Q18 X;  1BW4 A;  5EQJ B;  2YU9 A;  4JP7 A;  1PYU B;  3BQB A;  5DYG A;  3IR7 A;  3X2M A;  2DMR A;  1PYQ A;  3HKZ A;  1H5N A;  2JA6 A;  2E2H A;  2JA7 A;  2PI8 A;  1KQG A;  1N10 A;  2JIO A;  2PJJ A;  1BW3 A;  1TWG A;  3X2N A;  3FPR A;  2Q1D X;  2R93 A;  3FKI A;  4UC4 A;  2NVX A;  2JA5 A;  1PQF A;  2E7Z A;  5DYI A;  4CS0 A;  5T5I D;  1CZ5 A;  5FTN A;  2VPY A;  5CCX A;  1OA7 A;  4QIW A;  3GTG A;  4ZM7 A;  2R92 A;  1SMY D;  1I50 A;  1K83 A;  2QQS A;  5GLF A;  1HD5 A;  3CZB A;  2VPW A;  2KI8 A;  1PT1 A;  4FIB A;  5B6C A;  1CZ4 A;  4AOK B;  1Y4Z A;  2XDP A;  2VPZ A;  1DMS A;  2PNW A;  1EU1 A;  3X2J A;  5CD1 A;  3O5A A;  3SUM A;  3H0G A;  1TWA A;  4AZD A;  1SFO A;  3ZJV A;  1UHE A;  5C18 A;  4AAY A;  3X2O A;  4FG2 A;  1ZC1 A;  1FDO A;  2JIR A;  3GTJ A;  1E32 A;  1WCM A;  1YNN D;  2C45 A;  1SIW A;  3GTO A;  3X2H A;  3ENG A;  4CRY G;  1TWC A;  2PJH B;  2R7Z A;  3LHD A;  3X2L A;  3GTK A;  3ZJU A;  3PLX B;  1TWF A;  3M3G A;  2VUM A;  4JP6 A;  1OA9 A;  3OUG A;  4FER A;  1UHD A;  1ZYR D;  2PMZ A;  3SUL A;  4D7Z B;  1I9G A;  2KY9 A;  2KQA A;  5GLY A;  2HCZ X;  5D6X A;  1PT0 A;  3D30 A;  1PQE A;  5EPP A;  3TM7 B;  2NVY A;  5FTM A;  5D6W A;  1I3Q A;  4FG4 A;  3TIW A;  1QCS A;  1G8J A;  4FFT A;  1YLE A;  3ML1 A;  3IR6 A;  2E2I A;  1Y1V A;  1OGY A;  4CRZ A;  3HU3 A;  4ENG A;  2GF7 A;  2B25 A;  3QQ7 A;  4KDI A;  1CR5 A;  4JJO A;  2JIM A;  2LW6 A;  2AE0 X;  4KO8 A;  2PIC A;  2IV2 X;  3MB5 A;  1E61 A;  2YVL A;  4AVR A;  3GTM A;  1R27 A;  3HU2 A;  2GAE A;  2A6E D;  5GLX A;  5ERG B;  2MM2 A;  5FTK A;  5D6Y A;  4CQN A;  2JIP A;  1PPY A;  3CF2 A;  3SUJ A;  5C1B A;  1Q16 A;  1FDI A;  2Q19 X;  4JS7 A;  4AQ7 A;  2NAP A;  2WB1 A;  3GTP A;  5GM9 A;  4GA6 A;  2A68 D;  1YNJ D;  1L8F A;  3X2P A; 
#chains in the Genus database with same CATH homology
 1QDN A;  1TWH A;  3QQ8 A;  2A69 D;  2QQR A;  1E5V A;  2G5D A;  3QC8 A;  1KQF A;  2B63 A;  1R7R A;  2A6H D;  3FPT A;  2NYA A;  1IW7 D;  4AYB A;  2O5J D;  1H0H A;  2VPX A;  4KDL A;  1G8K A;  3CQZ A;  4RV0 A;  5FTL A;  3GTL A;  2G6G A;  2GFA A;  1S3S A;  5T5M D;  2MM0 A;  3HU1 A;  1AA6 A;  3QWZ A;  3GTQ A;  1O54 A;  2WAQ A;  1TMO A;  1VC3 B;  3FPU A;  2YUJ A;  4C2M A;  4ARC A;  3LGA A;  4KLN A;  2BE5 D;  1Y5I A;  2V3V A;  1PQH A;  2Y0S A;  4NOH A;  2JIQ A;  1DMR A;  1E18 A;  1R9T A;  5CCB A;  1E60 A;  4AS1 A;  4KOD A;  3ZJT A;  1WLF A;  5FTJ A;  4DMR A;  3ZGZ A;  3IR5 A;  2Q1A X;  2PWY A;  1AW8 B;  4ARI A;  4GA5 A;  4AON B;  2JV2 A;  3DMR A;  2EEO B;  1Y1W A;  2V45 A;  2Q1C X;  2CW0 D;  2Q18 X;  5EQJ B;  2YU9 A;  3BQB A;  1PYU B;  5DYG A;  3IR7 A;  2DMR A;  1PYQ A;  3HKZ A;  1H5N A;  2JA6 A;  2E2H A;  2JA7 A;  2PI8 A;  1KQG A;  2JIO A;  2PJJ A;  1TWG A;  3FPR A;  2Q1D X;  2R93 A;  3FKI A;  4UC4 A;  2NVX A;  2JA5 A;  1PQF A;  2E7Z A;  5DYI A;  4CS0 A;  5T5I D;  1CZ5 A;  5FTN A;  2VPY A;  5CCX A;  4QIW A;  3GTG A;  2R92 A;  1SMY D;  1I50 A;  1K83 A;  2QQS A;  5GLF A;  3CZB A;  2VPW A;  2KI8 A;  1PT1 A;  4FIB A;  5B6C A;  1CZ4 A;  4AOK B;  1Y4Z A;  2XDP A;  2VPZ A;  1DMS A;  2PNW A;  1EU1 A;  5CD1 A;  3O5A A;  3H0G A;  1TWA A;  4AZD A;  1SFO A;  3ZJV A;  1UHE A;  5C18 A;  4AAY A;  1ZC1 A;  1FDO A;  2JIR A;  3GTJ A;  1E32 A;  1WCM A;  1YNN D;  2C45 A;  1SIW A;  3GTO A;  4CRY G;  1TWC A;  2PJH B;  2R7Z A;  3LHD A;  3GTK A;  3ZJU A;  3PLX B;  1TWF A;  2VUM A;  3OUG A;  1UHD A;  1ZYR D;  2PMZ A;  4D7Z B;  2KY9 A;  1I9G A;  5D6X A;  1PT0 A;  1PQE A;  5EPP A;  3TM7 B;  2NVY A;  5FTM A;  5D6W A;  1I3Q A;  3TIW A;  1QCS A;  1G8J A;  1YLE A;  3ML1 A;  3IR6 A;  2E2I A;  1Y1V A;  1OGY A;  4CRZ A;  3HU3 A;  2GF7 A;  2B25 A;  3QQ7 A;  4KDI A;  1CR5 A;  2JIM A;  2LW6 A;  2AE0 X;  4KO8 A;  2PIC A;  2IV2 X;  3MB5 A;  1E61 A;  2YVL A;  3GTM A;  5ERG B;  1R27 A;  3HU2 A;  2GAE A;  2A6E D;  2MM2 A;  5FTK A;  5D6Y A;  4CQN A;  2JIP A;  1PPY A;  3CF2 A;  5C1B A;  1Q16 A;  1FDI A;  2Q19 X;  4AQ7 A;  2NAP A;  2WB1 A;  3GTP A;  4GA6 A;  2A68 D;  1YNJ D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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