4Q1TA

Crystal structure of a glutamate 5-kinase from burkholderia thailandensis
Total Genus 114

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
372
structure length
340
Chain Sequence
MRSIIADSKRLVVKVGSSLVTNGLDHDAIGRWAAQIAALRNEGKEVVLVSSGAIAEGMQRLGWSRRPREIDELQAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADRERYLNARSTLLTLLRLGVVPIINENDTVVTDEIKDNDTLGALVANLIEGDALIILTDQQGLLVAEASAGAPELMLTKILAAKRAAHSGANTVIASGRERDVLLRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDAGAVDKLTAGGKSLLPIGVVAVQGVFARGEVIACVNDAGREVARGITNYSSAEAKLIQRKPSGEIEAVLGYMLEPELIHRDNLVLV
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (4-7)AH7 (219-230)S1 (10-15)TI3 (145-148)TIV3 (146-149)3H2 (17-19)TIV1 (21-27)EMPTYTIV2 (22-28)AH1 (29-45)S2 (48-53)AH3 (73-97)S4 (134-139)S3 (102-107)TI1 (140-143)AH4 (109-113)S9 (277-285)AH5 (115-131)AH6 (154-164)S12 (327-333)S6 (194-196)TII1 (196-199)S7 (234-239)S5 (168-173)TI4 (199-202)AH11 (337-343)TII2 (242-245)TI5 (239-242)AH8 (245-251)AH9 (265-276)S8 (257-260)S10 (305-310)3H3 (302-304)TI6 (322-325)S11 (316-321)TII3 (313-316)TVIII1 (8-11)AH2 (56-64)AH10 (287-295)Updating...
connected with : NaN
molecule tags Transferase
source organism Burkholderia thailandensis
publication title Crystal structure of a glutamate 5-kinase from Burkholderia thailandensis
rcsb
molecule keywords Glutamate 5-kinase
total genus 114
structure length 340
sequence length 372
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2014-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 4q1tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4q1tA01
3U6UA 3QVFA 1GS5A 1SGVA 3AB4A 3S6HA 1WXXA 3D40A 1IT8A 2J0WA 1IQ8A 2OGXB 3EK5A 4NDRA 4DMGA 3D2PA 3ZZIA 3QURA 2JI5A 4NDPA 2R98A 4NDQB 2BUFA 4JZ9A 3AB2A 3EK6A 3AAWA 2CWWA 3WWMA 2WE4A 2R8VA 3ZZFA 3ZZHA 2JJXA 2P38A 4F6TB 4JZ8A 3C0KA 1IT7A 3QUOA 1OHAA 2AS0A 4A7XA 3TVIA 1E19A 1ZE1A 2BTYA 3D79A 2V5HA 3C20A 3NWYA 2CX0A 4USJA 3C1MA 3K4OA 4Q1TA 4AB7A 4NDOA 1OH9A 2J5VA 1B7BA 3UAIA 2JJ4A 1ZL3A 1OHBA 2BRIA 4NDRB 3KZFA 3QVHA 1K8WA 2V4YA 3K56A 3ZZGA 2WE5A 4NDPB 1SQWA 2A1FA 1ZS7A 2BRXA 3L86A 2J5TA 2BNFA 3LKKA 1Q7HA 1ZE2A 1R3EA 2Q07A 3S6KA 3K52A 3B8GA 3LDFA 1J2BA 2CDQA 2J4KA 4AXSA 2J0XA 3WWNA 2AP9A 1GSJA 4A7WA 2HMFA 2J4LA 2AB4A 3LL9A 3D2MA 2RD5A 2BNEA 2OGXA 3VSEA 4I49A 2X2WA 4NDOB 4OLCA 2IJ9A 4NDQA 1Z9DA 2AKOA 2J4JA 3LL5A 3K4YA 3L76A 1YBDA 3QUNA 2VA1A 2W21A 4KZTA 2BMUA 4F6TA 3D41A 3C1NA 3T7BA 2B78A 4JZ7A 3S6GA 2CX1A 1WXWA 2E9YA 1R3FA 1T5YA 2WXBA 2BNDA
chains in the Genus database with same CATH superfamily
2FRXA 3U6UA 3QVFA 1GS5A 1SGVA 3AB4A 3S6HA 1WXXA 3D40A 1IT8A 2J0WA 1IQ8A 2OGXB 3EK5A 4NDRA 4DMGA 3D2PA 3ZZIA 3QURA 2JI5A 4NDPA 4CI1B 2R98A 3M65A 4NDQB 3HJYA 2BUFA 4CI3B 4JZ9A 2APOA 3AB2A 3LWOA 3EK6A 3AAWA 2CWWA 2Z0TA 3LWVA 3WWMA 2WE4A 2R8VA 3ZZFA 3ZZHA 2JJXA 2DP9A 2P38A 4JZ8A 4F6TB 3C0KA 1IT7A 1TE7A 3QUOA 1OHAA 2AS0A 4A7XA 1UOYA 3TVIA 3HAXA 1E19A 1ZE1A 2BTYA 3D79A 2V5HA 3C20A 3NWYA 2CX0A 4USJA 3C1MA 3M6UA 4Q1TA 3K4OA 3M4XA 4AB7A 4NDOA 1OH9A 3ZV0C 2J5VA 1B7BA 3UAIA 2KKUA 2JJ4A 2E5OA 1ZL3A 1OHBA 2BRIA 4NDRB 3KZFA 3QVHA 1K8WA 3LWPA 2V4YA 3K56A 3ZZGA 3LJCA 2WE5A 3LWQA 4NDPB 1SQWA 2A1FA 1ZS7A 2BRXA 3L86A 2J5TA 2BNFA 3LKKA 2RFKA 1Q7HA 3M6WA 1ZE2A 1R3EA 1XNEA 1ZBOA 2Q07A 3S6KA 3M6XA 2EY4A 3K52A 3HJWA 3B8GA 3LDFA 1J2BA 2CDQA 2J4KA 3U28A 4CI2B 4AXSA 2J0XA 4TZ4C 3WWNA 2AP9A 1GSJA 4A7WA 2HMFA 2J4LA 2AB4A 3LL9A 3D2MA 2RD5A 2BNEA 2OGXA 3VSEA 4I49A 2X2WA 1S04A 4NDOB 4OLCA 2IJ9A 4NDQA 1Z9DA 2AKOA 1WK2A 2J4JA 2AUSA 3LL5A 3K4YA 3M6VA 1YBDA 3L76A 3QUNA 2VA1A 2W21A 4KZTA 2BMUA 4F6TA 3LWRA 2HVYA 2ANEA 3D41A 3C1NA 3T7BA 3MQKA 2B78A 4JZ7A 3S6GA 3IUWA 2CX1A 1WXWA 2E9YA 1R3FA 1T5YA 2WXBA 2BNDA
chains in the Genus database with same CATH topology
3U6UA 3QVFA 1GS5A 1SGVA 3AB4A 3S6HA 1WXXA 3D40A 1IT8A 2J0WA 1IQ8A 2OGXB 3EK5A 4NDRA 4DMGA 3D2PA 3ZZIA 3QURA 2JI5A 4NDPA 2R98A 4NDQB 2BUFA 4JZ9A 3AB2A 3EK6A 3AAWA 2CWWA 3WWMA 2WE4A 2R8VA 3ZZFA 3ZZHA 2JJXA 2P38A 4F6TB 4JZ8A 3C0KA 1IT7A 3QUOA 1OHAA 2AS0A 4A7XA 3TVIA 1E19A 1ZE1A 2BTYA 3D79A 2V5HA 3C20A 3NWYA 2CX0A 4USJA 3C1MA 3K4OA 4Q1TA 4AB7A 4NDOA 1OH9A 2J5VA 1B7BA 3UAIA 2JJ4A 1ZL3A 1OHBA 2BRIA 4NDRB 3KZFA 3QVHA 1K8WA 2V4YA 3K56A 3ZZGA 2WE5A 4NDPB 1SQWA 2A1FA 1ZS7A 2BRXA 3L86A 2J5TA 2BNFA 3LKKA 1Q7HA 1ZE2A 1R3EA 2Q07A 3S6KA 3K52A 3B8GA 3LDFA 1J2BA 2CDQA 2J4KA 4AXSA 2J0XA 3WWNA 2AP9A 1GSJA 4A7WA 2HMFA 2J4LA 2AB4A 3LL9A 3D2MA 2RD5A 2BNEA 2OGXA 3VSEA 4I49A 2X2WA 4NDOB 4OLCA 2IJ9A 4NDQA 1Z9DA 2AKOA 2J4JA 3LL5A 3K4YA 3L76A 1YBDA 3QUNA 2VA1A 2W21A 4KZTA 2BMUA 4F6TA 3D41A 3C1NA 3T7BA 2B78A 4JZ7A 3S6GA 2CX1A 1WXWA 2E9YA 1R3FA 1T5YA 2WXBA 2BNDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U6U A;  3QVF A;  1GS5 A;  1SGV A;  3AB4 A;  3S6H A;  1WXX A;  3D40 A;  1IT8 A;  2J0W A;  1IQ8 A;  2OGX B;  3EK5 A;  4NDR A;  4DMG A;  3D2P A;  3ZZI A;  3QUR A;  2JI5 A;  4NDP A;  2R98 A;  4NDQ B;  2BUF A;  4JZ9 A;  3AB2 A;  3EK6 A;  3AAW A;  2CWW A;  3WWM A;  2WE4 A;  2R8V A;  3ZZF A;  3ZZH A;  2JJX A;  2P38 A;  4F6T B;  4JZ8 A;  3C0K A;  1IT7 A;  3QUO A;  1OHA A;  2AS0 A;  4A7X A;  3TVI A;  1E19 A;  1ZE1 A;  2BTY A;  3D79 A;  2V5H A;  3C20 A;  3NWY A;  2CX0 A;  4USJ A;  3C1M A;  3K4O A;  4Q1T A;  4AB7 A;  4NDO A;  1OH9 A;  2J5V A;  1B7B A;  3UAI A;  2JJ4 A;  1ZL3 A;  1OHB A;  2BRI A;  4NDR B;  3KZF A;  3QVH A;  1K8W A;  2V4Y A;  3K56 A;  3ZZG A;  2WE5 A;  4NDP B;  1SQW A;  2A1F A;  1ZS7 A;  2BRX A;  3L86 A;  2J5T A;  2BNF A;  3LKK A;  1Q7H A;  1ZE2 A;  1R3E A;  2Q07 A;  3S6K A;  3K52 A;  3B8G A;  3LDF A;  1J2B A;  2CDQ A;  2J4K A;  4AXS A;  2J0X A;  3WWN A;  2AP9 A;  1GSJ A;  4A7W A;  2HMF A;  2J4L A;  2AB4 A;  3LL9 A;  3D2M A;  2RD5 A;  2BNE A;  2OGX A;  3VSE A;  4I49 A;  2X2W A;  4NDO B;  4OLC A;  2IJ9 A;  4NDQ A;  1Z9D A;  2AKO A;  2J4J A;  3LL5 A;  3K4Y A;  3L76 A;  1YBD A;  3QUN A;  2VA1 A;  2W21 A;  4KZT A;  2BMU A;  4F6T A;  3D41 A;  3C1N A;  3T7B A;  2B78 A;  4JZ7 A;  3S6G A;  2CX1 A;  1WXW A;  2E9Y A;  1R3F A;  1T5Y A;  2WXB A;  2BND A; 
#chains in the Genus database with same CATH topology
 2FRX A;  3U6U A;  3QVF A;  1GS5 A;  1SGV A;  3AB4 A;  3S6H A;  1WXX A;  3D40 A;  1IT8 A;  2J0W A;  1IQ8 A;  2OGX B;  3EK5 A;  4NDR A;  4DMG A;  3D2P A;  3ZZI A;  3QUR A;  2JI5 A;  4NDP A;  4CI1 B;  2R98 A;  3M65 A;  4NDQ B;  3HJY A;  2BUF A;  4CI3 B;  4JZ9 A;  2APO A;  3AB2 A;  3LWO A;  3EK6 A;  3AAW A;  2CWW A;  2Z0T A;  3LWV A;  3WWM A;  2WE4 A;  2R8V A;  3ZZF A;  3ZZH A;  2JJX A;  2DP9 A;  2P38 A;  4JZ8 A;  4F6T B;  3C0K A;  1IT7 A;  1TE7 A;  3QUO A;  1OHA A;  2AS0 A;  4A7X A;  1UOY A;  3TVI A;  3HAX A;  1E19 A;  1ZE1 A;  2BTY A;  3D79 A;  2V5H A;  3C20 A;  3NWY A;  2CX0 A;  4USJ A;  3C1M A;  3M6U A;  4Q1T A;  3K4O A;  3M4X A;  4AB7 A;  4NDO A;  1OH9 A;  3ZV0 C;  2J5V A;  1B7B A;  3UAI A;  2KKU A;  2JJ4 A;  2E5O A;  1ZL3 A;  1OHB A;  2BRI A;  4NDR B;  3KZF A;  3QVH A;  1K8W A;  3LWP A;  2V4Y A;  3K56 A;  3ZZG A;  3LJC A;  2WE5 A;  3LWQ A;  4NDP B;  1SQW A;  2A1F A;  1ZS7 A;  2BRX A;  3L86 A;  2J5T A;  2BNF A;  3LKK A;  2RFK A;  1Q7H A;  3M6W A;  1ZE2 A;  1R3E A;  1XNE A;  1ZBO A;  2Q07 A;  3S6K A;  3M6X A;  2EY4 A;  3K52 A;  3HJW A;  3B8G A;  3LDF A;  1J2B A;  2CDQ A;  2J4K A;  3U28 A;  4CI2 B;  4AXS A;  2J0X A;  4TZ4 C;  3WWN A;  2AP9 A;  1GSJ A;  4A7W A;  2HMF A;  2J4L A;  2AB4 A;  3LL9 A;  3D2M A;  2RD5 A;  2BNE A;  2OGX A;  3VSE A;  4I49 A;  2X2W A;  1S04 A;  4NDO B;  4OLC A;  2IJ9 A;  4NDQ A;  1Z9D A;  2AKO A;  1WK2 A;  2J4J A;  2AUS A;  3LL5 A;  3K4Y A;  3M6V A;  1YBD A;  3L76 A;  3QUN A;  2VA1 A;  2W21 A;  4KZT A;  2BMU A;  4F6T A;  3LWR A;  2HVY A;  2ANE A;  3D41 A;  3C1N A;  3T7B A;  3MQK A;  2B78 A;  4JZ7 A;  3S6G A;  3IUW A;  2CX1 A;  1WXW A;  2E9Y A;  1R3F A;  1T5Y A;  2WXB A;  2BND A; 
#chains in the Genus database with same CATH homology
 3U6U A;  3QVF A;  1GS5 A;  1SGV A;  3AB4 A;  3S6H A;  1WXX A;  3D40 A;  1IT8 A;  2J0W A;  1IQ8 A;  2OGX B;  3EK5 A;  4NDR A;  4DMG A;  3D2P A;  3ZZI A;  3QUR A;  2JI5 A;  4NDP A;  2R98 A;  4NDQ B;  2BUF A;  4JZ9 A;  3AB2 A;  3EK6 A;  3AAW A;  2CWW A;  3WWM A;  2WE4 A;  2R8V A;  3ZZF A;  3ZZH A;  2JJX A;  2P38 A;  4F6T B;  4JZ8 A;  3C0K A;  1IT7 A;  3QUO A;  1OHA A;  2AS0 A;  4A7X A;  3TVI A;  1E19 A;  1ZE1 A;  2BTY A;  3D79 A;  2V5H A;  3C20 A;  3NWY A;  2CX0 A;  4USJ A;  3C1M A;  3K4O A;  4Q1T A;  4AB7 A;  4NDO A;  1OH9 A;  2J5V A;  1B7B A;  3UAI A;  2JJ4 A;  1ZL3 A;  1OHB A;  2BRI A;  4NDR B;  3KZF A;  3QVH A;  1K8W A;  2V4Y A;  3K56 A;  3ZZG A;  2WE5 A;  4NDP B;  1SQW A;  2A1F A;  1ZS7 A;  2BRX A;  3L86 A;  2J5T A;  2BNF A;  3LKK A;  1Q7H A;  1ZE2 A;  1R3E A;  2Q07 A;  3S6K A;  3K52 A;  3B8G A;  3LDF A;  1J2B A;  2CDQ A;  2J4K A;  4AXS A;  2J0X A;  3WWN A;  2AP9 A;  1GSJ A;  4A7W A;  2HMF A;  2J4L A;  2AB4 A;  3LL9 A;  3D2M A;  2RD5 A;  2BNE A;  2OGX A;  3VSE A;  4I49 A;  2X2W A;  4NDO B;  4OLC A;  2IJ9 A;  4NDQ A;  1Z9D A;  2AKO A;  2J4J A;  3LL5 A;  3K4Y A;  3L76 A;  1YBD A;  3QUN A;  2VA1 A;  2W21 A;  4KZT A;  2BMU A;  4F6T A;  3D41 A;  3C1N A;  3T7B A;  2B78 A;  4JZ7 A;  3S6G A;  2CX1 A;  1WXW A;  2E9Y A;  1R3F A;  1T5Y A;  2WXB A;  2BND A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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