4RV0A

Crystal structure of tn complex
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
167
structure length
159
Chain Sequence
GAMEPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (78-79)TI1 (19-22)TVIII2 (108-111)TII1 (49-52)S4 (63-70)S1 (22-25)TIV1 (58-61)TVIII1 (28-31)S2 (35-38)TI2 (32-35)AH1 (83-89)3H1 (42-46)TI3 (39-42)TI4 (71-74)TI5 (75-78)TIV2 (143-147)TII3 (136-139)TII2 (92-95)S6 (95-101)S9 (147-152)TI6 (102-105)AH2 (126-136)S7 (110-115)S8 (142-143)TI'1 (59-62)S3 (52-57)Updating...
connected with : NaN
molecule tags Protein binding, transport protein
source organism Drosophila melanogaster
publication title Crystal structure of TN complex
rcsb
molecule keywords Transitional endoplasmic reticulum ATPase TER94
total genus 44
structure length 159
sequence length 167
chains with identical sequence C, E, G
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2014-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4rv0A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4rv0A02
5C18A 2JA6A 4CS0A 2VPXA 1AW8B 4KLNA 1TWAA 5FTJA 1Q16A 1S3SA 3HU3A 4KDLA 1PYUB 4QIWA 5EPPA 3GTPA 3GTKA 3CF2A 2E2IA 1H5NA 4KDIA 2B63A 1UHEA 1E32A 1FDIA 1QDNA 1WCMA 3CQZA 4AZDA 4GA5A 2EEOB 3GTMA 1Y1WA 2JIMA 3HKZA 1VC3B 3ML1A 3GTJA 3GTLA 3TM7B 5DYGA 2JV2A 1TWHA 3QWZA 1I3QA 4KO8A 2E7ZA 3QQ7A 2NVXA 2JIRA 1E61A 3PLXB 4C2MA 2V45A 1E5VA 1TWGA 5B6CA 1EU1A 2VUMA 1Y4ZA 5FTKA 1PQEA 3GTQA 3FKIA 4AOKB 2JA5A 1KQFA 1FDOA 1DMRA 1Y5IA 2WAQA 2E2HA 5GLFA 3IR7A 1OGYA 1WLFA 1ZC1A 1CZ4A 4AAYA 2NVYA 1R7RA 3GTGA 3HU1A 3H0GA 1G8JA 3O5AA 1PQFA 5FTNA 1G8KA 3DMRA 5FTMA 1DMSA 5T5ID 2PMZA 2VPWA 1SFOA 2DMRA 4DMRA 2NYAA 2JIOA 2PJHB 1CR5A 1E60A 3QQ8A 2JIQA 4GA6A 2IV2X 2R93A 4AONB 3QC8A 5FTLA 1AA6A 5T5MD 1PPYA 1K83A 1YLEA 2YUJA 2C45A 3HU2A 1SIWA 2KI8A 3GTOA 3IR5A 1UHDA 2Y0SA 1KQGA 2JIPA 2WB1A 2JA7A 1TWCA 1R9TA 4RV0A 4D7ZB 3TIWA 2VPZA 4CRZA 2R92A 4KODA 2YU9A 1IW7D 1Y1VA 4CRYG 2NAPA 1PT1A 2V3VA 4AYBA 1QCSA 3IR6A 5C1BA 1PYQA 1TWFA 1R27A 3OUGA 1I50A 2R7ZA 5DYIA 1CZ5A 2VPYA 1E18A 1TMOA 1PQHA 1PT0A 1H0HA
chains in the Genus database with same CATH superfamily
2AE0X 5C18A 3MB5A 2JA6A 2PI8A 4CS0A 2VPXA 1AW8B 4KLNA 3ZJUA 4JS7A 1TWAA 2ENGA 5FTJA 3X2KA 1BW4A 1Q16A 1S3SA 2A69D 3HU3A 1PYUB 4FG2A 4KDLA 4QIWA 5EPPA 3GTPA 3GTKA 3FPRA 5ERGB 3CF2A 2E2IA 1H5NA 4KDIA 2B63A 1UHEA 1E32A 3X2HA 3SUMA 1FDIA 1L8FA 4FIBA 5EQJB 1QDNA 1WCMA 3CQZA 4AZDA 4FG4A 4GA5A 5GLXA 2EEOB 3GTMA 1Y1WA 3BQBA 4CQNA 2JIMA 3HKZA 5D6WA 1VC3B 3ML1A 3GTJA 3GTLA 3TM7B 3SUJA 5DYGA 2XDPA 2JV2A 2O5JD 1TWHA 3QWZA 1I3QA 4UC4A 2PNWA 2A6HD 4KO8A 2Q18X 2KY9A 3SUKA 2A6ED 2E7ZA 3CZBA 3QQ7A 2NVXA 2JIRA 1OA7A 1E61A 4JJOA 5CCXA 3PLXB 4C2MA 2V45A 3ZJTA 1E5VA 2BH0A 1TWGA 5B6CA 4AVRA 1EU1A 5GLYA 2VUMA 1Y4ZA 3LGAA 5CD1A 4JP6A 4JCWA 5FTKA 1PQEA 5CCBA 3GTQA 3ZJVA 3FKIA 4AOKB 2JA5A 1KQFA 3X2LA 1FDOA 1DMRA 1Y5IA 2WAQA 5H4UA 2E2HA 5GLFA 2QQRA 3IR7A 3X2NA 4AS1A 1OGYA 1YNND 1WLFA 4AQ7A 1ZC1A 1CZ4A 4AAYA 2NVYA 3FPUA 1R7RA 1BW3A 2PICA 3X2OA 1I9GA 2PWYA 3GTGA 3HU1A 3H0GA 4ZM7A 1G8JA 3O5AA 1PQFA 5FTNA 1G8KA 3DMRA 5FTMA 2MM2A 2CW0D 1DMSA 2A68D 5T5ID 3X2GA 2YVLA 2PMZA 4FERA 2VPWA 1SFOA 2DMRA 4DMRA 2GAEA 2NYAA 2JIOA 2PJHB 1CR5A 4ENGA 1E60A 3QQ8A 2JIQA 4GA6A 2IV2X 1N10A 3X2PA 3LHDA 2R93A 4ARCA 1HD5A 3X2JA 4AONB 3QC8A 3FPTA 3ENGA 5FTLA 1AA6A 5T5MD 1PPYA 1K83A 2PJJA 1YLEA 2YUJA 2C45A 3HU2A 1SIWA 2KI8A 1WC2A 2BE5D 3GTOA 3M3GA 5D6XA 3IR5A 3D30A 1UHDA 4JP7A 4ARIA 2Y0SA 1KQGA 2Q1DX 2JIPA 2WB1A 5D6YA 2LW6A 4NOHA 2HCZX 2JA7A 1TWCA 3SULA 1R9TA 4RV0A 4D7ZB 3TIWA 2VPZA 4CRZA 2R92A 4KODA 2YU9A 1IW7D 1Y1VA 4CRYG 2QQSA 2NAPA 2Q1CX 1PT1A 2V3VA 4AYBA 1QCSA 3IR6A 4FFTA 1PYQA 1TWFA 4L48A 1R27A 5C1BA 2B25A 2Q19X 1ZYRD 2G5DA 3OUGA 5GM9A 1O54A 1I50A 2KQAA 2R7ZA 5DYIA 1OA9A 1CZ5A 2MM0A 3ZGZA 2VPYA 1E18A 1TMOA 1SMYD 2Q1AX 1PQHA 2GF7A 3X2IA 2GFAA 3X2MA 1YNJD 2G6GA 1PT0A 1H0HA
chains in the Genus database with same CATH topology
2AE0X 5C18A 3MB5A 2JA6A 2PI8A 4CS0A 2VPXA 1AW8B 4KLNA 3ZJUA 1TWAA 5FTJA 2Q1CX 1Q16A 1S3SA 2A69D 3HU3A 1PYUB 4KDLA 4QIWA 5EPPA 3GTPA 3GTKA 3FPRA 5ERGB 3CF2A 2E2IA 1H5NA 4KDIA 2B63A 1UHEA 1E32A 1FDIA 4FIBA 5EQJB 1QDNA 1WCMA 3CQZA 4AZDA 4GA5A 2EEOB 3GTMA 1Y1WA 3BQBA 4CQNA 2JIMA 3HKZA 5D6WA 1VC3B 3ML1A 3GTJA 3GTLA 3TM7B 5DYGA 2XDPA 2JV2A 2O5JD 1TWHA 3QWZA 1I3QA 4UC4A 2PNWA 2A6HD 4KO8A 2Q18X 2KY9A 2A6ED 2E7ZA 3CZBA 3QQ7A 2NVXA 2JIRA 1E61A 5CCXA 3PLXB 4C2MA 2V45A 3ZJTA 1E5VA 1TWGA 5B6CA 1EU1A 2VUMA 1Y4ZA 3LGAA 5CD1A 5FTKA 1PQEA 5CCBA 3GTQA 3ZJVA 3FKIA 4AOKB 2JA5A 1KQFA 1FDOA 1DMRA 1Y5IA 2WAQA 2QQRA 2E2HA 5GLFA 3IR7A 4AS1A 1OGYA 1YNND 1WLFA 4AQ7A 1ZC1A 1CZ4A 4AAYA 2NVYA 3FPUA 1R7RA 1I9GA 2PICA 2PWYA 3GTGA 3HU1A 3H0GA 1G8JA 3O5AA 1PQFA 5FTNA 1G8KA 3DMRA 5FTMA 2MM2A 2CW0D 1DMSA 2A68D 5T5ID 2YVLA 2PMZA 2VPWA 1SFOA 2DMRA 4DMRA 2GAEA 2NYAA 2JIOA 2PJHB 1CR5A 1E60A 3QQ8A 2JIQA 4GA6A 2IV2X 3LHDA 2R93A 4ARCA 4AONB 3QC8A 3FPTA 5FTLA 1AA6A 5T5MD 1PPYA 1K83A 2PJJA 1YLEA 2YUJA 2C45A 3HU2A 1SIWA 2KI8A 2BE5D 3GTOA 5D6XA 3IR5A 1UHDA 4ARIA 2Y0SA 1KQGA 2Q1DX 2JIPA 2WB1A 5D6YA 2LW6A 4NOHA 2JA7A 1TWCA 1R9TA 4RV0A 4D7ZB 3TIWA 2VPZA 4CRZA 2R92A 4KODA 2YU9A 1IW7D 1Y1VA 4CRYG 2QQSA 2NAPA 1PT1A 2V3VA 4AYBA 1QCSA 3IR6A 5C1BA 1PYQA 1TWFA 2GFAA 1R27A 2B25A 2Q19X 1ZYRD 2G5DA 3OUGA 1O54A 1I50A 2R7ZA 2MM0A 5DYIA 1CZ5A 3ZGZA 2VPYA 1E18A 1TMOA 1SMYD 2Q1AX 1PQHA 2GF7A 1YNJD 2G6GA 1PT0A 1H0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C18 A;  2JA6 A;  4CS0 A;  2VPX A;  1AW8 B;  4KLN A;  1TWA A;  5FTJ A;  1Q16 A;  1S3S A;  3HU3 A;  4KDL A;  1PYU B;  4QIW A;  5EPP A;  3GTP A;  3GTK A;  3CF2 A;  2E2I A;  1H5N A;  4KDI A;  2B63 A;  1UHE A;  1E32 A;  1FDI A;  1QDN A;  1WCM A;  3CQZ A;  4AZD A;  4GA5 A;  2EEO B;  3GTM A;  1Y1W A;  2JIM A;  3HKZ A;  1VC3 B;  3ML1 A;  3GTJ A;  3GTL A;  3TM7 B;  5DYG A;  2JV2 A;  1TWH A;  3QWZ A;  1I3Q A;  4KO8 A;  2E7Z A;  3QQ7 A;  2NVX A;  2JIR A;  1E61 A;  3PLX B;  4C2M A;  2V45 A;  1E5V A;  1TWG A;  5B6C A;  1EU1 A;  2VUM A;  1Y4Z A;  5FTK A;  1PQE A;  3GTQ A;  3FKI A;  4AOK B;  2JA5 A;  1KQF A;  1FDO A;  1DMR A;  1Y5I A;  2WAQ A;  2E2H A;  5GLF A;  3IR7 A;  1OGY A;  1WLF A;  1ZC1 A;  1CZ4 A;  4AAY A;  2NVY A;  1R7R A;  3GTG A;  3HU1 A;  3H0G A;  1G8J A;  3O5A A;  1PQF A;  5FTN A;  1G8K A;  3DMR A;  5FTM A;  1DMS A;  5T5I D;  2PMZ A;  2VPW A;  1SFO A;  2DMR A;  4DMR A;  2NYA A;  2JIO A;  2PJH B;  1CR5 A;  1E60 A;  3QQ8 A;  2JIQ A;  4GA6 A;  2IV2 X;  2R93 A;  4AON B;  3QC8 A;  5FTL A;  1AA6 A;  5T5M D;  1PPY A;  1K83 A;  1YLE A;  2YUJ A;  2C45 A;  3HU2 A;  1SIW A;  2KI8 A;  3GTO A;  3IR5 A;  1UHD A;  2Y0S A;  1KQG A;  2JIP A;  2WB1 A;  2JA7 A;  1TWC A;  1R9T A;  4RV0 A;  4D7Z B;  3TIW A;  2VPZ A;  4CRZ A;  2R92 A;  4KOD A;  2YU9 A;  1IW7 D;  1Y1V A;  4CRY G;  2NAP A;  1PT1 A;  2V3V A;  4AYB A;  1QCS A;  3IR6 A;  5C1B A;  1PYQ A;  1TWF A;  1R27 A;  3OUG A;  1I50 A;  2R7Z A;  5DYI A;  1CZ5 A;  2VPY A;  1E18 A;  1TMO A;  1PQH A;  1PT0 A;  1H0H A; 
#chains in the Genus database with same CATH topology
 2AE0 X;  5C18 A;  3MB5 A;  2JA6 A;  2PI8 A;  4CS0 A;  2VPX A;  1AW8 B;  4KLN A;  3ZJU A;  4JS7 A;  1TWA A;  2ENG A;  5FTJ A;  3X2K A;  1BW4 A;  1Q16 A;  1S3S A;  2A69 D;  3HU3 A;  1PYU B;  4FG2 A;  4KDL A;  4QIW A;  5EPP A;  3GTP A;  3GTK A;  3FPR A;  5ERG B;  3CF2 A;  2E2I A;  1H5N A;  4KDI A;  2B63 A;  1UHE A;  1E32 A;  3X2H A;  3SUM A;  1FDI A;  1L8F A;  4FIB A;  5EQJ B;  1QDN A;  1WCM A;  3CQZ A;  4AZD A;  4FG4 A;  4GA5 A;  5GLX A;  2EEO B;  3GTM A;  1Y1W A;  3BQB A;  4CQN A;  2JIM A;  3HKZ A;  5D6W A;  1VC3 B;  3ML1 A;  3GTJ A;  3GTL A;  3TM7 B;  3SUJ A;  5DYG A;  2XDP A;  2JV2 A;  2O5J D;  1TWH A;  3QWZ A;  1I3Q A;  4UC4 A;  2PNW A;  2A6H D;  4KO8 A;  2Q18 X;  2KY9 A;  3SUK A;  2A6E D;  2E7Z A;  3CZB A;  3QQ7 A;  2NVX A;  2JIR A;  1OA7 A;  1E61 A;  4JJO A;  5CCX A;  3PLX B;  4C2M A;  2V45 A;  3ZJT A;  1E5V A;  2BH0 A;  1TWG A;  5B6C A;  4AVR A;  1EU1 A;  5GLY A;  2VUM A;  1Y4Z A;  3LGA A;  5CD1 A;  4JP6 A;  4JCW A;  5FTK A;  1PQE A;  5CCB A;  3GTQ A;  3ZJV A;  3FKI A;  4AOK B;  2JA5 A;  1KQF A;  3X2L A;  1FDO A;  1DMR A;  1Y5I A;  2WAQ A;  5H4U A;  2E2H A;  5GLF A;  2QQR A;  3IR7 A;  3X2N A;  4AS1 A;  1OGY A;  1YNN D;  1WLF A;  4AQ7 A;  1ZC1 A;  1CZ4 A;  4AAY A;  2NVY A;  3FPU A;  1R7R A;  1BW3 A;  2PIC A;  3X2O A;  1I9G A;  2PWY A;  3GTG A;  3HU1 A;  3H0G A;  4ZM7 A;  1G8J A;  3O5A A;  1PQF A;  5FTN A;  1G8K A;  3DMR A;  5FTM A;  2MM2 A;  2CW0 D;  1DMS A;  2A68 D;  5T5I D;  3X2G A;  2YVL A;  2PMZ A;  4FER A;  2VPW A;  1SFO A;  2DMR A;  4DMR A;  2GAE A;  2NYA A;  2JIO A;  2PJH B;  1CR5 A;  4ENG A;  1E60 A;  3QQ8 A;  2JIQ A;  4GA6 A;  2IV2 X;  1N10 A;  3X2P A;  3LHD A;  2R93 A;  4ARC A;  1HD5 A;  3X2J A;  4AON B;  3QC8 A;  3FPT A;  3ENG A;  5FTL A;  1AA6 A;  5T5M D;  1PPY A;  1K83 A;  2PJJ A;  1YLE A;  2YUJ A;  2C45 A;  3HU2 A;  1SIW A;  2KI8 A;  1WC2 A;  2BE5 D;  3GTO A;  3M3G A;  5D6X A;  3IR5 A;  3D30 A;  1UHD A;  4JP7 A;  4ARI A;  2Y0S A;  1KQG A;  2Q1D X;  2JIP A;  2WB1 A;  5D6Y A;  2LW6 A;  4NOH A;  2HCZ X;  2JA7 A;  1TWC A;  3SUL A;  1R9T A;  4RV0 A;  4D7Z B;  3TIW A;  2VPZ A;  4CRZ A;  2R92 A;  4KOD A;  2YU9 A;  1IW7 D;  1Y1V A;  4CRY G;  2QQS A;  2NAP A;  2Q1C X;  1PT1 A;  2V3V A;  4AYB A;  1QCS A;  3IR6 A;  4FFT A;  1PYQ A;  1TWF A;  4L48 A;  1R27 A;  5C1B A;  2B25 A;  2Q19 X;  1ZYR D;  2G5D A;  3OUG A;  5GM9 A;  1O54 A;  1I50 A;  2KQA A;  2R7Z A;  5DYI A;  1OA9 A;  1CZ5 A;  2MM0 A;  3ZGZ A;  2VPY A;  1E18 A;  1TMO A;  1SMY D;  2Q1A X;  1PQH A;  2GF7 A;  3X2I A;  2GFA A;  3X2M A;  1YNJ D;  2G6G A;  1PT0 A;  1H0H A; 
#chains in the Genus database with same CATH homology
 2AE0 X;  5C18 A;  3MB5 A;  2JA6 A;  2PI8 A;  4CS0 A;  2VPX A;  1AW8 B;  4KLN A;  3ZJU A;  1TWA A;  5FTJ A;  2Q1C X;  1Q16 A;  1S3S A;  2A69 D;  3HU3 A;  1PYU B;  4KDL A;  4QIW A;  5EPP A;  3GTP A;  3GTK A;  3FPR A;  5ERG B;  3CF2 A;  2E2I A;  1H5N A;  4KDI A;  2B63 A;  1UHE A;  1E32 A;  1FDI A;  4FIB A;  5EQJ B;  1QDN A;  1WCM A;  3CQZ A;  4AZD A;  4GA5 A;  2EEO B;  3GTM A;  1Y1W A;  3BQB A;  4CQN A;  2JIM A;  3HKZ A;  5D6W A;  1VC3 B;  3ML1 A;  3GTJ A;  3GTL A;  3TM7 B;  5DYG A;  2XDP A;  2JV2 A;  2O5J D;  1TWH A;  3QWZ A;  1I3Q A;  4UC4 A;  2PNW A;  2A6H D;  4KO8 A;  2Q18 X;  2KY9 A;  2A6E D;  2E7Z A;  3CZB A;  3QQ7 A;  2NVX A;  2JIR A;  1E61 A;  5CCX A;  3PLX B;  4C2M A;  2V45 A;  3ZJT A;  1E5V A;  1TWG A;  5B6C A;  1EU1 A;  2VUM A;  1Y4Z A;  3LGA A;  5CD1 A;  5FTK A;  1PQE A;  5CCB A;  3GTQ A;  3ZJV A;  3FKI A;  4AOK B;  2JA5 A;  1KQF A;  1FDO A;  1DMR A;  1Y5I A;  2WAQ A;  2QQR A;  2E2H A;  5GLF A;  3IR7 A;  4AS1 A;  1OGY A;  1YNN D;  1WLF A;  4AQ7 A;  1ZC1 A;  1CZ4 A;  4AAY A;  2NVY A;  3FPU A;  1R7R A;  1I9G A;  2PIC A;  2PWY A;  3GTG A;  3HU1 A;  3H0G A;  1G8J A;  3O5A A;  1PQF A;  5FTN A;  1G8K A;  3DMR A;  5FTM A;  2MM2 A;  2CW0 D;  1DMS A;  2A68 D;  5T5I D;  2YVL A;  2PMZ A;  2VPW A;  1SFO A;  2DMR A;  4DMR A;  2GAE A;  2NYA A;  2JIO A;  2PJH B;  1CR5 A;  1E60 A;  3QQ8 A;  2JIQ A;  4GA6 A;  2IV2 X;  3LHD A;  2R93 A;  4ARC A;  4AON B;  3QC8 A;  3FPT A;  5FTL A;  1AA6 A;  5T5M D;  1PPY A;  1K83 A;  2PJJ A;  1YLE A;  2YUJ A;  2C45 A;  3HU2 A;  1SIW A;  2KI8 A;  2BE5 D;  3GTO A;  5D6X A;  3IR5 A;  1UHD A;  4ARI A;  2Y0S A;  1KQG A;  2Q1D X;  2JIP A;  2WB1 A;  5D6Y A;  2LW6 A;  4NOH A;  2JA7 A;  1TWC A;  1R9T A;  4RV0 A;  4D7Z B;  3TIW A;  2VPZ A;  4CRZ A;  2R92 A;  4KOD A;  2YU9 A;  1IW7 D;  1Y1V A;  4CRY G;  2QQS A;  2NAP A;  1PT1 A;  2V3V A;  4AYB A;  1QCS A;  3IR6 A;  5C1B A;  1PYQ A;  1TWF A;  2GFA A;  1R27 A;  2B25 A;  2Q19 X;  1ZYR D;  2G5D A;  3OUG A;  1O54 A;  1I50 A;  2R7Z A;  2MM0 A;  5DYI A;  1CZ5 A;  3ZGZ A;  2VPY A;  1E18 A;  1TMO A;  1SMY D;  2Q1A X;  1PQH A;  2GF7 A;  1YNJ D;  2G6G A;  1PT0 A;  1H0H A; 
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