The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
174
|
structure length |
174
|
Chain Sequence |
GSNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Details of Ufd1 Binding to p97 and Their Functional Implications in ER-Associated Degradation
pubmed doi rcsb |
| molecule tags |
Hydrolase/protein binding
|
| source organism |
Homo sapiens
|
| molecule keywords |
Transitional endoplasmic reticulum ATPase
|
| total genus |
50
|
| structure length |
174
|
| sequence length |
174
|
| ec nomenclature |
ec
3.6.4.6: Vesicle-fusing ATPase. |
| pdb deposition date | 2016-05-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02359 | CDC48_N | Cell division protein 48 (CDC48), N-terminal domain |
| A | PF02933 | CDC48_2 | Cell division protein 48 (CDC48), domain 2 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | Barwin-like endoglucanases | ||
| Alpha Beta | Roll | Vcp-like ATPase; Chain A, domain 2 | Vcp-like ATPase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 5C18 A; 2NAP A; 1FDI A; 1E18 A; 2JA6 A; 5FTL A; 1Y5I A; 3GTK A; 1Y4Z A; 4AOK B; 1YLE A; 2YUJ A; 2R7Z A; 1I50 A; 4GA6 A; 2IV2 X; 1R7R A; 4AYB A; 1PPY A; 1I3Q A; 1FDO A; 3IR7 A; 3GTJ A; 2VPZ A; 3GTG A; 1UHD A; 1CZ4 A; 1QDN A; 3TM7 B; 1R9T A; 2R92 A; 1K83 A; 3HU2 A; 3GTQ A; 1Y1W A; 4AZD A; 3H0G A; 4CRY G; 5T5I D; 1KQG A; 5FTK A; 1AW8 B; 1E60 A; 1DMR A; 1H0H A; 4D7Z B; 1DMS A; 1SIW A; 2V45 A; 2YU9 A; 1EU1 A; 2JIM A; 4AON B; 4DMR A; 1TMO A; 1E5V A; 1PQE A; 2WAQ A; 3QQ7 A; 2VPW A; 2E2H A; 1R27 A; 4AAY A; 3GTM A; 1PYU B; 1S3S A; 3HU1 A; 3CQZ A; 3TIW A; 2JIO A; 4KLN A; 3GTO A; 2E2I A; 1UHE A; 1WLF A; 1PQF A; 2NVX A; 3O5A A; 2WB1 A; 5DYG A; 2NVY A; 5EPP A; 2VPX A; 1AA6 A; 4GA5 A; 1PYQ A; 1Q16 A; 5FTM A; 1TWF A; 4RV0 A; 1WCM A; 3QQ8 A; 4KOD A; 3FKI A; 2JA7 A; 1IW7 D; 1TWC A; 2KI8 A; 5B6C A; 3DMR A; 2VUM A; 4CRZ A; 1H5N A; 3GTL A; 2JIP A; 2PMZ A; 3QWZ A; 2DMR A; 4KDI A; 1KQF A; 2E7Z A; 1PQH A; 3CF2 A; 1G8J A; 1QCS A; 2Y0S A; 5GLF A; 1Y1V A; 3ML1 A; 1CZ5 A; 4CS0 A; 1CR5 A; 5C1B A; 3IR5 A; 1TWA A; 1E61 A; 2B63 A; 1TWG A; 5DYI A; 2V3V A; 3GTP A; 1E32 A; 2JIQ A; 2VPY A; 5FTJ A; 2NYA A; 1G8K A; 3HU3 A; 1SFO A; 2R93 A; 2PJH B; 1TWH A; 5FTN A; 2JA5 A; 3QC8 A; 4KDL A; 3OUG A; 2JV2 A; 1PT0 A; 1VC3 B; 3HKZ A; 4QIW A; 2C45 A; 1OGY A; 3PLX B; 1ZC1 A; 1PT1 A; 5T5M D; 2JIR A; 3IR6 A; 2EEO B; 4KO8 A; 4C2M A; #chains in the Genus database with same CATH topology 2B25 A; 5C18 A; 2NAP A; 1FDI A; 1E18 A; 1BW3 A; 2JA6 A; 2ENG A; 5FTL A; 1Y5I A; 3SUM A; 1Y4Z A; 3GTK A; 5H4U A; 4AOK B; 1YLE A; 3CZB A; 2HCZ X; 2YUJ A; 3ZJT A; 2R7Z A; 1I50 A; 1SMY D; 4GA6 A; 2IV2 X; 1R7R A; 2AE0 X; 3SUK A; 1PPY A; 4AYB A; 1I3Q A; 4AQ7 A; 2O5J D; 2Q19 X; 5D6W A; 1FDO A; 3IR7 A; 3GTJ A; 2A68 D; 2PI8 A; 2VPZ A; 3GTG A; 2Q1A X; 2MM2 A; 1UHD A; 2G5D A; 1CZ4 A; 1QDN A; 3TM7 B; 1R9T A; 2R92 A; 3X2P A; 1K83 A; 2PWY A; 4FIB A; 3HU2 A; 3GTQ A; 1Y1W A; 2XDP A; 4AZD A; 3H0G A; 4CRY G; 5T5I D; 1KQG A; 4NOH A; 5FTK A; 1AW8 B; 1OA9 A; 1E60 A; 4AVR A; 3SUL A; 1DMR A; 1H0H A; 1OA7 A; 1N10 A; 4D7Z B; 1DMS A; 1SIW A; 3X2L A; 2V45 A; 2YU9 A; 1HD5 A; 1EU1 A; 2JIM A; 2A6E D; 4AON B; 5CD1 A; 4DMR A; 4FG4 A; 1TMO A; 1E5V A; 1PQE A; 2WAQ A; 3QQ7 A; 2VPW A; 4FG2 A; 4ZM7 A; 2E2H A; 1R27 A; 4AAY A; 3GTM A; 4UC4 A; 4ARI A; 1PYU B; 1S3S A; 4L48 A; 5GLX A; 3X2I A; 2PNW A; 3HU1 A; 3X2H A; 4FFT A; 3CQZ A; 3TIW A; 3ZJV A; 2JIO A; 3FPU A; 2A69 D; 4KLN A; 3GTO A; 3FPR A; 3X2O A; 2E2I A; 1UHE A; 1WLF A; 2CW0 D; 1PQF A; 4JP6 A; 2NVX A; 2LW6 A; 3X2G A; 3O5A A; 2WB1 A; 5DYG A; 3D30 A; 1L8F A; 3ZJU A; 2Q1C X; 2NVY A; 5EPP A; 1WC2 A; 2VPX A; 2QQR A; 1AA6 A; 2GFA A; 3X2M A; 1O54 A; 4GA5 A; 3MB5 A; 1PYQ A; 2YVL A; 5CCB A; 1Q16 A; 5FTM A; 4ARC A; 1TWF A; 1YNJ D; 2GAE A; 4FER A; 4ENG A; 4RV0 A; 5GLY A; 5D6Y A; 2BH0 A; 2PIC A; 1WCM A; 5EQJ B; 4AS1 A; 3QQ8 A; 4KOD A; 3FKI A; 2KY9 A; 2JA7 A; 1IW7 D; 1TWC A; 2KI8 A; 5B6C A; 3ZGZ A; 3DMR A; 4JJO A; 2VUM A; 4JP7 A; 2KQA A; 4CRZ A; 1H5N A; 2Q18 X; 3GTL A; 2QQS A; 3LGA A; 2JIP A; 2PMZ A; 3QWZ A; 2DMR A; 4JS7 A; 4KDI A; 1KQF A; 5D6X A; 2E7Z A; 3FPT A; 5CCX A; 1PQH A; 3CF2 A; 1G8J A; 1QCS A; 2Y0S A; 5GLF A; 1Y1V A; 3ML1 A; 2BE5 D; 3X2N A; 1CZ5 A; 4CS0 A; 1BW4 A; 1CR5 A; 4JCW A; 5C1B A; 3IR5 A; 5GM9 A; 1TWA A; 3SUJ A; 1E61 A; 2B63 A; 1TWG A; 5DYI A; 2V3V A; 3M3G A; 3GTP A; 4KO8 A; 1E32 A; 3X2J A; 2MM0 A; 3BQB A; 2JIQ A; 2VPY A; 2Q1D X; 4CQN A; 5FTJ A; 2NYA A; 1G8K A; 1YNN D; 3HU3 A; 5ERG B; 1SFO A; 2R93 A; 2PJH B; 3ENG A; 3LHD A; 2G6G A; 1TWH A; 5FTN A; 2JA5 A; 3QC8 A; 4KDL A; 3OUG A; 2JV2 A; 1PT0 A; 1VC3 B; 3HKZ A; 4QIW A; 2C45 A; 1OGY A; 2PJJ A; 3PLX B; 3X2K A; 1ZC1 A; 1PT1 A; 5T5M D; 2GF7 A; 2JIR A; 3IR6 A; 2EEO B; 1ZYR D; 4C2M A; 1I9G A; 2A6H D; #chains in the Genus database with same CATH homology 2B25 A; 5C18 A; 2NAP A; 1FDI A; 1E18 A; 2JA6 A; 5FTL A; 1Y5I A; 3GTK A; 1Y4Z A; 4AOK B; 1YLE A; 3CZB A; 2YUJ A; 3ZJT A; 2R7Z A; 1I50 A; 1SMY D; 4GA6 A; 2IV2 X; 1R7R A; 2AE0 X; 4AYB A; 1PPY A; 1I3Q A; 4AQ7 A; 2O5J D; 2Q19 X; 5D6W A; 1FDO A; 3IR7 A; 3GTJ A; 2A68 D; 2PI8 A; 2VPZ A; 3GTG A; 2Q1A X; 2MM2 A; 1UHD A; 2G5D A; 1CZ4 A; 1QDN A; 3TM7 B; 1R9T A; 2R92 A; 1K83 A; 2PWY A; 4FIB A; 3HU2 A; 3GTQ A; 1Y1W A; 2XDP A; 4AZD A; 3H0G A; 4CRY G; 5T5I D; 1KQG A; 4NOH A; 5FTK A; 1AW8 B; 1E60 A; 1DMR A; 1H0H A; 4D7Z B; 1DMS A; 1SIW A; 2V45 A; 2YU9 A; 1EU1 A; 2JIM A; 2A6E D; 4AON B; 5CD1 A; 4DMR A; 1TMO A; 1E5V A; 1PQE A; 2WAQ A; 3QQ7 A; 2VPW A; 2E2H A; 1R27 A; 4AAY A; 3GTM A; 4UC4 A; 4ARI A; 1PYU B; 1S3S A; 2PNW A; 3HU1 A; 3CQZ A; 3TIW A; 3ZJV A; 2JIO A; 3FPU A; 2A69 D; 4KLN A; 3GTO A; 3FPR A; 2E2I A; 1UHE A; 1WLF A; 2CW0 D; 1PQF A; 2NVX A; 2LW6 A; 3O5A A; 2WB1 A; 5DYG A; 3ZJU A; 2Q1C X; 2NVY A; 5EPP A; 2VPX A; 2QQR A; 1AA6 A; 2GFA A; 1O54 A; 4GA5 A; 3MB5 A; 1PYQ A; 2YVL A; 5CCB A; 1Q16 A; 5FTM A; 4ARC A; 1TWF A; 1YNJ D; 2GAE A; 4RV0 A; 5D6Y A; 2PIC A; 5EQJ B; 1WCM A; 4AS1 A; 3QQ8 A; 4KOD A; 3FKI A; 2KY9 A; 2JA7 A; 1IW7 D; 1TWC A; 2KI8 A; 5B6C A; 3ZGZ A; 3DMR A; 2VUM A; 4CRZ A; 1H5N A; 2Q18 X; 3GTL A; 2QQS A; 3LGA A; 2JIP A; 2PMZ A; 3QWZ A; 2DMR A; 4KDI A; 1KQF A; 5D6X A; 2E7Z A; 3FPT A; 5CCX A; 1PQH A; 3CF2 A; 1G8J A; 1QCS A; 2Y0S A; 5GLF A; 1Y1V A; 3ML1 A; 2BE5 D; 1CZ5 A; 4CS0 A; 1CR5 A; 5C1B A; 3IR5 A; 1TWA A; 1E61 A; 2B63 A; 1TWG A; 5DYI A; 2V3V A; 3GTP A; 2MM0 A; 4KO8 A; 1E32 A; 3BQB A; 2JIQ A; 2VPY A; 2Q1D X; 4CQN A; 5FTJ A; 2NYA A; 1G8K A; 1YNN D; 3HU3 A; 5ERG B; 1SFO A; 2R93 A; 2PJH B; 3LHD A; 2G6G A; 1TWH A; 5FTN A; 2JA5 A; 3QC8 A; 4KDL A; 3OUG A; 2JV2 A; 1PT0 A; 1VC3 B; 3HKZ A; 4QIW A; 2C45 A; 1OGY A; 2PJJ A; 3PLX B; 1ZC1 A; 1PT1 A; 5T5M D; 2GF7 A; 2JIR A; 3IR6 A; 1ZYR D; 2EEO B; 4C2M A; 1I9G A; 2A6H D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
