1I7CB

Human s-adenosylmethionine decarboxylase with covalently bound pyruvoyl group and complexed with methylglyoxal bis-(guanylhydrazone)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
64
structure length
61
Chain Sequence
AHFFEGTEKLLEVWFSRQQPQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN
publication title The structural basis for substrate specificity and inhibition of human S-adenosylmethionine decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 9
structure length 61
sequence length 64
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2001-03-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 1i7cB01
1I7MB 3H0WB 5TVOB 3EP4B 3EP5B 3EP3B 3EP7B 1I79B 3DZ4B 3DZ5B 3DZ6B 1I72B 1MHMB 3EPAB 3DZ2B 3EP8B 3EP9B 1I7CB 1I7BB 3EP6B 3EPBB 3DZ7B 1JENB 3H0VB 3DZ3B
chains in the Genus database with same CATH superfamily
1NVMB 4YWJA 3M2TA 5JY6A 3E6AA 1DAPA 5GZ3A 1SZJG 2O4UX 1CERA 1E5LA 3KGDA 2D2IA 1YS4A 3IDSA 1DC3A 1YL7A 3Q2KA 1H9AA 4HKTA 3TUXA 2PKQO 2DUUA 1YWGO 1F06A 3RC2A 1GCUA 3QVXA 1I7BB 1XYGA 1EBFA 3L6OO 2HKIA 3V5NA 1I7MB 4IQ8A 2PKQP 1GYPA 1Q2XA 2AXQA 2EJWA 4PG8A 1U1IA 1NQ5A 2GYYA 2GZ1A 1XEAA 2FPNA 2R00C 3I23A 3RC9A 3DZ5B 2B4TO 3DOCA 1H2HA 4L8VA 1I72B 3JSAA 5CEFA 4XRGA 1H94A 1H93A 2GLXA 1LC3A 3CPSA 3TW3A 4R54A 2OZPA 3HNPA 1DRWA 1PR3A 3H0WB 2CZCA 1LA2A 5A02A 3QVWA 4XQ9A 1B7GO 1QMHA 3UUWA 4PG7A 1H6AA 3RBVA 2QZ9A 2VYVD 1J5PA 3NTQA 1ZNQO 1QKIA 5T73A 1GR0A 5AQ1A 1H6DA 4INAA 3V1YA 3PWKA 2G17A 5KVSA 1PQUA 1LC0A 4O89A 3E9MA 2X0NA 4NHEA 3EP4B 4MINA 4ZHSA 4KOAA 1Q7GA 1JKFA 2VYVA 1PU2A 4DPLA 1I79B 1YDWA 3DZ4B 3IWDB 3WYCA 3DZ6B 4O8JA 1EBUA 3EP8B 4R5MA 3PZRA 4LRSB 3EP6B 1GADO 4DIBA 3EC7A 2DBVO 4GMFA 1E7MA 3CINA 3V2UA 4MVJI 2IXBA 1DC4A 4XQEA 1DSSG 4LGVA 3EP5B 5JW6A 2GZ3A 2GZ2A 4GPD1 4WNCA 1VC2A 5GZ1A 4WNIA 1GAEO 2PKRA 3IWBB 3PYXA 3QW2A 1TB4A 5GZ6A 1P1HA 1VKNA 3GNQA 3WB9A 2XF8A 1NWHA 4O59O 2DC1A 5EIOA 3NTRA 4GMGA 4RL6A 1FF9A 1CF2O 3K9QO 2DPGA 3K2BA 1BRMA 2PH5A 2HJSA 3NT5A 2YYYA 3O9ZA 1DPGA 3WBBA 1C3VA 1PQPA 3HXLA 1I7CB 3L0DA 5JYAA 1DIHA 3NTOA 3DMTA 1J0XO 1K3TA 3EUWA 1H6BA 3NT2A 4XQCA 3PZBA 4R3NA 3HSKA 4XB1A 3WBFA 4PLPA 3LC2O 3PYLA 3KSZO 2G82A 3PYMA 1OZAA 4HADA 1VM6A 3ABIA 3DR3A 2Q4EA 1U8FO 1GL3A 4FB5A 5A04A 3DZ3B 2NVWA 1T4DA 1CRWG 3QVTA 2P2SA 4MJLA 1TVEA 1NQAO 2H63A 3HQ4O 3LVFO 2O48X 4R5HA 2BH9A 1RYEA 4ZICA 3ZJXA 4MIEA 2X5KO 3IP3A 3RC1A 3RC7A 2GD1O 3EP9B 3EVNA 3RVDA 1E77A 4P8RA 1OBFO 4BOYA 1VSVA 3NT4A 3DTYA 3BTVA 3PWSA 3K73O 3EZYA 3RCBA 1ZH8A 1E7YA 1JKIA 5EINA 3FHLA 2VYND 1NQOA 4DBVO 3CEAA 2EP5A 1QMIA 2Q49A 4R3WA 5A03A 4MVJE 3DZ2B 3GFGA 1DRUA 5EESA 4MVJF 3CMCO 2I3GA 1TA4A 4MVJH 4DPKA 2DAPA 1ML3A 4MIYA 5AVOA 3L4SO 1E5QA 1H6CA 3LC7O 3DMTC 3STHA 3DB2A 4R4JA 4IQ0A 3EP7B 3INGA 1P1IA 4O63O 4R51A 4MVJM 4QX6A 4II7A 1NBOA 3E1KA 1QXSA 1RYDA 3C8MA 4PG5A 3MOIA 1UYJA 4MIOA 4XR4A 3H0VB 3LC1O 3DBVO 3UW3A 3ZCXA 2I5PO 3CIFA 5A06A 1RM3A 3HJAA 3Q1LA 4XB2A 3E5RA 1DC6A 2I3AA 3WGZA 2X5JO 4LSMA 4CLQA 2NQTA 1NX6A 5M6DA 1NWCA 4TVBA 2BHLA 1A7KA 4WOJA 3GPDG 3OA0A 3OHSX 5JYEA 1T4BA 4MKXA 3B20A 3WGOA 1H9BA 1EVJA 3E18A 4JN6B 4EW6A 3VAZA 3OA2A 1I32A 3DAPA 3WYBA 3B1KA 3EPBB 3DZ7B 3TUTA 3PFWO 3DO5A 2IXAA 3Q11A 3H9EO 1IHYA 3FD8A 3OQBA 5TVOB 3MZ0A 3QV1A 5A05A 1YL6A 2EP7A 1MC4A 4GQAA 3BTSA 3TV1A 1GPDG 5JYFA 3B1JA 3QVSA 5C7IO 1YL5A 3KSDO 3Q0EA 2YV3A 5C7OO 1P1KA 2B4RO 4K9DA 3MTJA 3BIOA 1GD1O 4MVJG 1S7CA 3KUXA 4AK1A 4R41A 1MB4A 1VSUA 3U3XA 4L9RA 2CVOA 3IJPA 1RM5A 3TZ6A 1DRVA 4XQGA 5DDIP 1NPTO 5BNTA 5KVQA 3Q2IA 4N54A 1VKOA 2VYNA 4H3VA 5C7LO 1TLTA 1DC5A 3PQVA 1RM0A 3EP3B 2R00A 3QY9A 4F3YA 4MVJD 1JN0A 2HO5A 5EERA 1P9LA 1MHMB 1HDGO 1IHXA 1ARZA 4DPMA 4MKZA 1GYQA 4LRTB 4PG4A 4YDRA 3E82A 3F4LA 1JENB 3IWCB 3ZDFA 4MVJA 1DBVO 5J9GA 2Q22A 1OFGA 1PS8A 3WGQA 3GDOA 1RM4A 1P1FA 3WGYA 4Z0HO 4PG6A 3C1AA 3EPAB 1P1JA 3KV3O 3BTUA 4MVJP 2POQX 3VOSA 1I33A
chains in the Genus database with same CATH topology
1MHMA 1I7MB 3EPAA 3DZ2A 3H0WB 3EP8A 2IIIA 3EP9A 5TVOB 3EP4B 3EP5B 1I7CA 3EP3B 1I7BA 3EPBA 3EP6A 3EP7B 3DZ7A 1I79B 3DZ4B 3H0VA 1JENA 3DZ3A 1VR7A 1I7MA 3DZ5B 3EP4A 3H0WA 3DZ6B 1I72B 1MSVA 1MHMB 3EPAB 3DZ5A 5TVOA 3EP5A 3DZ2B 3EP8B 1TMIA 3EP9B 3EP3A 1I79A 1TLUA 3EP7A 1I7CB 3DZ4A 1I7BB 3EP6B 3EPBB 3DZ7B 1JENB 3H0VB 1I72A 3DZ3B 1JL0A 3DZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I7M B;  3H0W B;  5TVO B;  3EP4 B;  3EP5 B;  3EP3 B;  3EP7 B;  1I79 B;  3DZ4 B;  3DZ5 B;  3DZ6 B;  1I72 B;  1MHM B;  3EPA B;  3DZ2 B;  3EP8 B;  3EP9 B;  1I7C B;  1I7B B;  3EP6 B;  3EPB B;  3DZ7 B;  1JEN B;  3H0V B;  3DZ3 B; 
#chains in the Genus database with same CATH topology
 1NVM B;  4YWJ A;  3M2T A;  5JY6 A;  3E6A A;  1DAP A;  5GZ3 A;  1SZJ G;  2O4U X;  1CER A;  1E5L A;  3KGD A;  2D2I A;  1YS4 A;  3IDS A;  1DC3 A;  1YL7 A;  3Q2K A;  1H9A A;  4HKT A;  3TUX A;  2PKQ O;  2DUU A;  1YWG O;  1F06 A;  3RC2 A;  1GCU A;  3QVX A;  1I7B B;  1XYG A;  1EBF A;  3L6O O;  2HKI A;  3V5N A;  1I7M B;  4IQ8 A;  2PKQ P;  1GYP A;  1Q2X A;  2AXQ A;  2EJW A;  4PG8 A;  1U1I A;  1NQ5 A;  2GYY A;  2GZ1 A;  1XEA A;  2FPN A;  2R00 C;  3I23 A;  3RC9 A;  3DZ5 B;  2B4T O;  3DOC A;  1H2H A;  4L8V A;  1I72 B;  3JSA A;  5CEF A;  4XRG A;  1H94 A;  1H93 A;  2GLX A;  1LC3 A;  3CPS A;  3TW3 A;  4R54 A;  2OZP A;  3HNP A;  1DRW A;  1PR3 A;  3H0W B;  2CZC A;  1LA2 A;  5A02 A;  3QVW A;  4XQ9 A;  1B7G O;  1QMH A;  3UUW A;  4PG7 A;  1H6A A;  3RBV A;  2QZ9 A;  2VYV D;  1J5P A;  3NTQ A;  1ZNQ O;  1QKI A;  5T73 A;  1GR0 A;  5AQ1 A;  1H6D A;  4INA A;  3V1Y A;  3PWK A;  2G17 A;  5KVS A;  1PQU A;  1LC0 A;  4O89 A;  3E9M A;  2X0N A;  4NHE A;  3EP4 B;  4MIN A;  4ZHS A;  4KOA A;  1Q7G A;  1JKF A;  2VYV A;  1PU2 A;  4DPL A;  1I79 B;  1YDW A;  3DZ4 B;  3IWD B;  3WYC A;  3DZ6 B;  4O8J A;  1EBU A;  3EP8 B;  4R5M A;  3PZR A;  4LRS B;  3EP6 B;  1GAD O;  4DIB A;  3EC7 A;  2DBV O;  4GMF A;  1E7M A;  3CIN A;  3V2U A;  4MVJ I;  2IXB A;  1DC4 A;  4XQE A;  1DSS G;  4LGV A;  3EP5 B;  5JW6 A;  2GZ3 A;  2GZ2 A;  4GPD 1;  4WNC A;  1VC2 A;  5GZ1 A;  4WNI A;  1GAE O;  2PKR A;  3IWB B;  3PYX A;  3QW2 A;  1TB4 A;  5GZ6 A;  1P1H A;  1VKN A;  3GNQ A;  3WB9 A;  2XF8 A;  1NWH A;  4O59 O;  2DC1 A;  5EIO A;  3NTR A;  4GMG A;  4RL6 A;  1FF9 A;  1CF2 O;  3K9Q O;  2DPG A;  3K2B A;  1BRM A;  2PH5 A;  2HJS A;  3NT5 A;  2YYY A;  3O9Z A;  1DPG A;  3WBB A;  1C3V A;  1PQP A;  3HXL A;  1I7C B;  3L0D A;  5JYA A;  1DIH A;  3NTO A;  3DMT A;  1J0X O;  1K3T A;  3EUW A;  1H6B A;  3NT2 A;  4XQC A;  3PZB A;  4R3N A;  3HSK A;  4XB1 A;  3WBF A;  4PLP A;  3LC2 O;  3PYL A;  3KSZ O;  2G82 A;  3PYM A;  1OZA A;  4HAD A;  1VM6 A;  3ABI A;  3DR3 A;  2Q4E A;  1U8F O;  1GL3 A;  4FB5 A;  5A04 A;  3DZ3 B;  2NVW A;  1T4D A;  1CRW G;  3QVT A;  2P2S A;  4MJL A;  1TVE A;  1NQA O;  2H63 A;  3HQ4 O;  3LVF O;  2O48 X;  4R5H A;  2BH9 A;  1RYE A;  4ZIC A;  3ZJX A;  4MIE A;  2X5K O;  3IP3 A;  3RC1 A;  3RC7 A;  2GD1 O;  3EP9 B;  3EVN A;  3RVD A;  1E77 A;  4P8R A;  1OBF O;  4BOY A;  1VSV A;  3NT4 A;  3DTY A;  3BTV A;  3PWS A;  3K73 O;  3EZY A;  3RCB A;  1ZH8 A;  1E7Y A;  1JKI A;  5EIN A;  3FHL A;  2VYN D;  1NQO A;  4DBV O;  3CEA A;  2EP5 A;  1QMI A;  2Q49 A;  4R3W A;  5A03 A;  4MVJ E;  3DZ2 B;  3GFG A;  1DRU A;  5EES A;  4MVJ F;  3CMC O;  2I3G A;  1TA4 A;  4MVJ H;  4DPK A;  2DAP A;  1ML3 A;  4MIY A;  5AVO A;  3L4S O;  1E5Q A;  1H6C A;  3LC7 O;  3DMT C;  3STH A;  3DB2 A;  4R4J A;  4IQ0 A;  3EP7 B;  3ING A;  1P1I A;  4O63 O;  4R51 A;  4MVJ M;  4QX6 A;  4II7 A;  1NBO A;  3E1K A;  1QXS A;  1RYD A;  3C8M A;  4PG5 A;  3MOI A;  1UYJ A;  4MIO A;  4XR4 A;  3H0V B;  3LC1 O;  3DBV O;  3UW3 A;  3ZCX A;  2I5P O;  3CIF A;  5A06 A;  1RM3 A;  3HJA A;  3Q1L A;  4XB2 A;  3E5R A;  1DC6 A;  2I3A A;  3WGZ A;  2X5J O;  4LSM A;  4CLQ A;  2NQT A;  1NX6 A;  5M6D A;  1NWC A;  4TVB A;  2BHL A;  1A7K A;  4WOJ A;  3GPD G;  3OA0 A;  3OHS X;  5JYE A;  1T4B A;  4MKX A;  3B20 A;  3WGO A;  1H9B A;  1EVJ A;  3E18 A;  4JN6 B;  4EW6 A;  3VAZ A;  3OA2 A;  1I32 A;  3DAP A;  3WYB A;  3B1K A;  3EPB B;  3DZ7 B;  3TUT A;  3PFW O;  3DO5 A;  2IXA A;  3Q11 A;  3H9E O;  1IHY A;  3FD8 A;  3OQB A;  5TVO B;  3MZ0 A;  3QV1 A;  5A05 A;  1YL6 A;  2EP7 A;  1MC4 A;  4GQA A;  3BTS A;  3TV1 A;  1GPD G;  5JYF A;  3B1J A;  3QVS A;  5C7I O;  1YL5 A;  3KSD O;  3Q0E A;  2YV3 A;  5C7O O;  1P1K A;  2B4R O;  4K9D A;  3MTJ A;  3BIO A;  1GD1 O;  4MVJ G;  1S7C A;  3KUX A;  4AK1 A;  4R41 A;  1MB4 A;  1VSU A;  3U3X A;  4L9R A;  2CVO A;  3IJP A;  1RM5 A;  3TZ6 A;  1DRV A;  4XQG A;  5DDI P;  1NPT O;  5BNT A;  5KVQ A;  3Q2I A;  4N54 A;  1VKO A;  2VYN A;  4H3V A;  5C7L O;  1TLT A;  1DC5 A;  3PQV A;  1RM0 A;  3EP3 B;  2R00 A;  3QY9 A;  4F3Y A;  4MVJ D;  1JN0 A;  2HO5 A;  5EER A;  1P9L A;  1MHM B;  1HDG O;  1IHX A;  1ARZ A;  4DPM A;  4MKZ A;  1GYQ A;  4LRT B;  4PG4 A;  4YDR A;  3E82 A;  3F4L A;  1JEN B;  3IWC B;  3ZDF A;  4MVJ A;  1DBV O;  5J9G A;  2Q22 A;  1OFG A;  1PS8 A;  3WGQ A;  3GDO A;  1RM4 A;  1P1F A;  3WGY A;  4Z0H O;  4PG6 A;  3C1A A;  3EPA B;  1P1J A;  3KV3 O;  3BTU A;  4MVJ P;  2POQ X;  3VOS A;  1I33 A; 
#chains in the Genus database with same CATH homology
 1MHM A;  1I7M B;  3EPA A;  3DZ2 A;  3H0W B;  3EP8 A;  2III A;  3EP9 A;  5TVO B;  3EP4 B;  3EP5 B;  1I7C A;  3EP3 B;  1I7B A;  3EPB A;  3EP6 A;  3EP7 B;  3DZ7 A;  1I79 B;  3DZ4 B;  3H0V A;  1JEN A;  3DZ3 A;  1VR7 A;  1I7M A;  3DZ5 B;  3EP4 A;  3H0W A;  3DZ6 B;  1I72 B;  1MSV A;  1MHM B;  3EPA B;  3DZ5 A;  5TVO A;  3EP5 A;  3DZ2 B;  3EP8 B;  1TMI A;  3EP9 B;  3EP3 A;  1I79 A;  1TLU A;  3EP7 A;  1I7C B;  3DZ4 A;  1I7B B;  3EP6 B;  3EPB B;  3DZ7 B;  1JEN B;  3H0V B;  1I72 A;  3DZ3 B;  1JL0 A;  3DZ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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