The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
116
|
sequence length |
353
|
structure length |
353
|
Chain Sequence |
KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Unusual molecular architecture of the Yersinia pestis cytotoxin YopM: a leucine-rich repeat protein with the shortest repeating unit.
pubmed doi rcsb |
| molecule keywords |
OUTER PROTEIN YOPM
|
| molecule tags |
Toxin
|
| source organism |
Yersinia pestis
|
| total genus |
116
|
| structure length |
353
|
| sequence length |
353
|
| ec nomenclature | |
| pdb deposition date | 2000-11-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12468 | TTSSLRR | Type III secretion system leucine rich repeat protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 3W3K A; 1G9U A; 3ZYI A; 4R6J A; 1O6S A; 4RCA B; 4R6A A; 3RW7 A; 5AWB A; 1XEC A; 4R58 A; 4R08 A; 4TZH A; 5AWD A; 3OJA B; 4R5C A; 1OTO A; 2OMY A; 4LSC A; 4XGO A; 4CP6 A; 3RJ0 A; 1M9L A; 3RFE A; 3RGZ A; 3W3J A; 3WPI A; 1DFJ I; 3E4G A; 4L3A A; 3FXI A; 1IO0 A; 3CVR A; 1WWL A; 5HDH A; 4C2A B; 1YRG A; 2Y5Q A; 2Z82 A; 2WQU A; 1XWD C; 4UFR A; 4C2B B; 4CC4 C; 3G04 C; 4GT6 A; 4K17 A; 3RFS A; 2UZX A; 3WPG A; 1XEU A; 4R5D A; 2BEX A; 2WQW A; 1FO1 A; 1XKU A; 4QC0 A; 3W3N A; 2O6R A; 1OTM A; 5HZL B; 3C6N B; 2RR6 A; 4OQT A; 4PSJ A; 5D3I A; 2ID5 A; 3OJA A; 3E6J A; 4J0M A; 5B4P A; 5GS0 A; 4Z64 C; 2P1N B; 1D0B A; 2P1O B; 2V9T B; 5CMP A; 4V2D A; 4QBZ A; 4QXE A; 3TSR E; 3UL9 A; 2Z7X A; 4CNC A; 4PEQ B; 4LI2 A; 2V70 A; 4AW4 A; 3O53 A; 1OTN A; 3OGL B; 3VQ1 A; 4FDW A; 2OMU A; 4PER A; 5GMG A; 4U06 A; 1Z7X W; 4V2C A; 3WPF A; 3WPE A; 2OMZ A; 4V2E A; 5GQR K; 1A4Y A; 3KJ4 A; 3UN9 A; 4R0A A; 4Z8G A; 4NKH A; 4ARN A; 4Q3I A; 3WPC A; 3ULU A; 1KOO A; 3G06 A; 1SQ0 B; 3RW6 A; 5AWA A; 4Y61 B; 4CIL A; 1H6U A; 2RA8 A; 4RWT C; 4Z79 A; 3JB9 j; 4RCW A; 1O6T A; 1M0Z A; 2FT3 A; 4GLP A; 2P1M B; 1JL5 A; 3CIY A; 1K5G C; 5IYX C; 4MQW X; 3ZYJ A; 1P8T A; 3M19 A; 5B0T A; 4I6J B; 4EZG A; 4CNM A; 3OGM B; 5IJC A; 3G3B A; 3RIZ A; 4FD0 A; 2WQX A; 4FCG A; 4M7E A; 2OMX A; 4LXR A; 3W3G A; 2JE0 A; 3E3Z A; 3G3A A; 5B0N A; 3UL8 A; 2XWT C; 1K5D C; 2R9U A; 5CMN A; 1OGQ A; 3ZYO A; 2XOT A; 1DS9 A; 4FMZ A; 4LI1 A; 1FS2 A; 1XCD A; 4PQ8 A; 3ZYN A; 2ASS B; 3WPB A; 2IFG A; 3W3L A; 3SB4 A; 2WQV A; 5FTT B; 4R6F A; 4U7L A; 4H09 A; 5GMF A; 1ZIW A; 2O6S A; 5LFN A; 4LSX C; 4R6G A; 1KOH A; 4ARR A; 3GOZ A; 1FQV A; 4KT1 A; 2BNH A; 3REZ A; 3C6P B; 4ECN A; 2P1Q B; 2AST B; 3RGX A; 1A9N A; 4YEB B; 2JE1 A; 1O6V A; 2OMT A; 4Q3G A; 4NKG A; 2Z65 A; 4CC4 A; 4FHO A; 4BSS A; 4HQ1 A; 3E2J A; 1OZN A; 1DCE A; 4U09 A; 3P72 A; 4R07 A; 4LXS A; 1PGV A; 2WFH A; 3RFJ A; 3G39 A; 3ULV A; 3A79 B; 5A5C A; 4U08 A; 3PMH G; 2ELL A; 3OGK B; 4IM6 A; 4LSA A; 3UL7 A; 4L3F A; 1M10 B; 1OOK G; 1P8V A; 4R09 A; 4WP6 A; 4KXF B; 4XOS A; 3CIG A; 2Z64 A; 4WYK A; 3ULA A; 4XSQ A; 1P9A G; 1GWB A; 2Z7X B; 1FT8 A; 4Z61 C; 3WPD A; 3W3M A; 2V9S A; 2A0Z A; 1QYY A; 2OMV A; 1H6T A; 4G8A A; 5AZ5 A; 3WN4 A; 4BSR A; 5IJD A; 4KNG A; 3VQ2 A; 2UZY A; 1LTX A; 5IJB A; 4PKI G; 3C6O B; 3WPH A; 4LSX A; 2JQD A; 4Z94 G; 2Z63 A; 2Z81 A; 3M18 A; 2Q4G W; 4Q62 A; 4B8C D; 4J4L A; 2O6Q A; 4BV4 R; 3BZ5 A; 2OMW A; 4P8S A; 5GS2 B; 4AY9 X; 4P91 A; 1M9S A; 4ECO A; 2P1P B; 4FS7 A; 2Z62 A; 2Z66 A; 3O6N A; 4MN8 B; 4M7E C; 1W8A A; 3DZE A; 5GMH A; 5AWC A; 4BSU A; 1U0N D; 2CA6 A; #chains in the Genus database with same CATH topology 3W3K A; 1G9U A; 3ZYI A; 4R6J A; 1O6S A; 4RCA B; 4R6A A; 3RW7 A; 5AWB A; 1XEC A; 4R58 A; 4R08 A; 4TZH A; 5AWD A; 3OJA B; 4R5C A; 1OTO A; 2OMY A; 4LSC A; 4XGO A; 4CP6 A; 3RJ0 A; 1M9L A; 3RFE A; 3RGZ A; 3W3J A; 3WPI A; 1DFJ I; 3E4G A; 4L3A A; 3FXI A; 1IO0 A; 3CVR A; 1WWL A; 5HDH A; 4NZT M; 4C2A B; 1YRG A; 2Y5Q A; 2Z82 A; 2WQU A; 1XWD C; 4UFR A; 4C2B B; 4CC4 C; 3G04 C; 4GT6 A; 4K17 A; 3RFS A; 2UZX A; 3WPG A; 1XEU A; 4R5D A; 2BEX A; 2WQW A; 1FO1 A; 1XKU A; 4QC0 A; 3W3N A; 2O6R A; 1OTM A; 5HZL B; 3C6N B; 4NZR M; 2RR6 A; 4OQT A; 4PSJ A; 5D3I A; 2ID5 A; 3OJA A; 3E6J A; 4J0M A; 5B4P A; 5GS0 A; 4Z64 C; 2P1N B; 1D0B A; 2P1O B; 2V9T B; 5CMP A; 4V2D A; 4QBZ A; 4QXE A; 3TSR E; 3UL9 A; 2Z7X A; 4CNC A; 4PEQ B; 4LI2 A; 2V70 A; 4AW4 A; 3O53 A; 1OTN A; 3OGL B; 3VQ1 A; 4FDW A; 2OMU A; 4PER A; 5GMG A; 4U06 A; 1Z7X W; 4V2C A; 3WPF A; 3WPE A; 2OMZ A; 4V2E A; 5GQR K; 1A4Y A; 3KJ4 A; 3UN9 A; 4R0A A; 4Z8G A; 4NKH A; 4ARN A; 4Q3I A; 3WPC A; 3ULU A; 1KOO A; 3G06 A; 1SQ0 B; 3RW6 A; 5AWA A; 4Y61 B; 4CIL A; 1H6U A; 2RA8 A; 4RWT C; 4Z79 A; 3JB9 j; 4RCW A; 1O6T A; 1M0Z A; 2FT3 A; 4GLP A; 2P1M B; 1JL5 A; 3CIY A; 1K5G C; 5IYX C; 4MQW X; 3ZYJ A; 1P8T A; 3M19 A; 5B0T A; 4I6J B; 4EZG A; 4CNM A; 3OGM B; 5IJC A; 3G3B A; 3RIZ A; 4FD0 A; 2WQX A; 4FCG A; 4M7E A; 2OMX A; 4LXR A; 3W3G A; 2JE0 A; 3E3Z A; 3G3A A; 5B0N A; 3UL8 A; 2XWT C; 1K5D C; 2R9U A; 5CMN A; 1OGQ A; 3ZYO A; 2XOT A; 1DS9 A; 4FMZ A; 4LI1 A; 1FS2 A; 1XCD A; 4PQ8 A; 3ZYN A; 2ASS B; 3WPB A; 2IFG A; 3W3L A; 3SB4 A; 2WQV A; 5FTT B; 4R6F A; 4U7L A; 4H09 A; 5GMF A; 1ZIW A; 2O6S A; 5LFN A; 4LSX C; 4R6G A; 1KOH A; 4ARR A; 3GOZ A; 1FQV A; 4KT1 A; 2BNH A; 3REZ A; 3C6P B; 4ECN A; 2P1Q B; 2AST B; 3RGX A; 1A9N A; 4YEB B; 2JE1 A; 1O6V A; 2OMT A; 4Q3G A; 4NKG A; 2Z65 A; 4CC4 A; 4FHO A; 4BSS A; 4HQ1 A; 3E2J A; 1OZN A; 1DCE A; 4U09 A; 3P72 A; 4R07 A; 4LXS A; 1PGV A; 2WFH A; 3RFJ A; 3G39 A; 3ULV A; 3A79 B; 5A5C A; 4U08 A; 3PMH G; 2ELL A; 3OGK B; 4IM6 A; 4LSA A; 3UL7 A; 4L3F A; 1M10 B; 1OOK G; 1P8V A; 4R09 A; 4WP6 A; 4KXF B; 4XOS A; 3CIG A; 2Z64 A; 4WYK A; 3ULA A; 4XSQ A; 1P9A G; 1GWB A; 2Z7X B; 1FT8 A; 4Z61 C; 3WPD A; 3W3M A; 2V9S A; 2A0Z A; 1QYY A; 2OMV A; 1H6T A; 4G8A A; 5AZ5 A; 3WN4 A; 4BSR A; 5IJD A; 4KNG A; 3VQ2 A; 2UZY A; 1LTX A; 5IJB A; 4PKI G; 3C6O B; 3WPH A; 4LSX A; 2JQD A; 4Z94 G; 2Z63 A; 2Z81 A; 3M18 A; 2Q4G W; 4Q62 A; 4B8C D; 4J4L A; 2O6Q A; 4BV4 R; 3BZ5 A; 2OMW A; 4P8S A; 5GS2 B; 4AY9 X; 4P91 A; 1M9S A; 4ECO A; 2P1P B; 4FS7 A; 2Z62 A; 2Z66 A; 3O6N A; 4MN8 B; 4M7E C; 1W8A A; 3DZE A; 5GMH A; 5AWC A; 4BSU A; 1U0N D; 2CA6 A; #chains in the Genus database with same CATH homology 3W3K A; 1G9U A; 3ZYI A; 4R6J A; 1O6S A; 4RCA B; 4R6A A; 3RW7 A; 5AWB A; 1XEC A; 4R58 A; 4R08 A; 4TZH A; 5AWD A; 3OJA B; 4R5C A; 1OTO A; 2OMY A; 4LSC A; 4XGO A; 4CP6 A; 3RJ0 A; 1M9L A; 3RFE A; 3RGZ A; 3W3J A; 3WPI A; 1DFJ I; 3E4G A; 4L3A A; 3FXI A; 1IO0 A; 3CVR A; 1WWL A; 5HDH A; 4C2A B; 1YRG A; 2Y5Q A; 2Z82 A; 2WQU A; 1XWD C; 4UFR A; 4C2B B; 4CC4 C; 3G04 C; 4GT6 A; 4K17 A; 3RFS A; 2UZX A; 3WPG A; 1XEU A; 4R5D A; 2BEX A; 2WQW A; 1FO1 A; 1XKU A; 4QC0 A; 3W3N A; 2O6R A; 1OTM A; 5HZL B; 3C6N B; 2RR6 A; 4OQT A; 4PSJ A; 5D3I A; 2ID5 A; 3OJA A; 3E6J A; 4J0M A; 5B4P A; 5GS0 A; 4Z64 C; 2P1N B; 1D0B A; 2P1O B; 2V9T B; 5CMP A; 4V2D A; 4QBZ A; 4QXE A; 3TSR E; 3UL9 A; 2Z7X A; 4CNC A; 4PEQ B; 4LI2 A; 2V70 A; 4AW4 A; 3O53 A; 1OTN A; 3OGL B; 3VQ1 A; 4FDW A; 2OMU A; 4PER A; 5GMG A; 4U06 A; 1Z7X W; 4V2C A; 3WPF A; 3WPE A; 2OMZ A; 4V2E A; 5GQR K; 1A4Y A; 3KJ4 A; 3UN9 A; 4R0A A; 4Z8G A; 4NKH A; 4ARN A; 4Q3I A; 3WPC A; 3ULU A; 1KOO A; 3G06 A; 1SQ0 B; 3RW6 A; 5AWA A; 4Y61 B; 4CIL A; 1H6U A; 2RA8 A; 4RWT C; 4Z79 A; 3JB9 j; 4RCW A; 1O6T A; 1M0Z A; 2FT3 A; 4GLP A; 2P1M B; 1JL5 A; 3CIY A; 1K5G C; 5IYX C; 4MQW X; 3ZYJ A; 1P8T A; 3M19 A; 5B0T A; 4I6J B; 4EZG A; 4CNM A; 3OGM B; 5IJC A; 3G3B A; 3RIZ A; 4FD0 A; 2WQX A; 4FCG A; 4M7E A; 2OMX A; 4LXR A; 3W3G A; 2JE0 A; 3E3Z A; 3G3A A; 5B0N A; 3UL8 A; 2XWT C; 1K5D C; 2R9U A; 5CMN A; 1OGQ A; 3ZYO A; 2XOT A; 1DS9 A; 4FMZ A; 4LI1 A; 1FS2 A; 1XCD A; 4PQ8 A; 3ZYN A; 2ASS B; 3WPB A; 2IFG A; 3W3L A; 3SB4 A; 2WQV A; 5FTT B; 4R6F A; 4U7L A; 4H09 A; 5GMF A; 1ZIW A; 2O6S A; 5LFN A; 4LSX C; 4R6G A; 1KOH A; 4ARR A; 3GOZ A; 1FQV A; 4KT1 A; 2BNH A; 3REZ A; 3C6P B; 4ECN A; 2P1Q B; 2AST B; 3RGX A; 1A9N A; 4YEB B; 2JE1 A; 1O6V A; 2OMT A; 4Q3G A; 4NKG A; 2Z65 A; 4CC4 A; 4FHO A; 4BSS A; 4HQ1 A; 3E2J A; 1OZN A; 1DCE A; 4U09 A; 3P72 A; 4R07 A; 4LXS A; 1PGV A; 2WFH A; 3RFJ A; 3G39 A; 3ULV A; 3A79 B; 5A5C A; 4U08 A; 3PMH G; 2ELL A; 3OGK B; 4IM6 A; 4LSA A; 3UL7 A; 4L3F A; 1M10 B; 1OOK G; 1P8V A; 4R09 A; 4WP6 A; 4KXF B; 4XOS A; 3CIG A; 2Z64 A; 4WYK A; 3ULA A; 4XSQ A; 1P9A G; 1GWB A; 2Z7X B; 1FT8 A; 4Z61 C; 3WPD A; 3W3M A; 2V9S A; 2A0Z A; 1QYY A; 2OMV A; 1H6T A; 4G8A A; 5AZ5 A; 3WN4 A; 4BSR A; 5IJD A; 4KNG A; 3VQ2 A; 2UZY A; 1LTX A; 5IJB A; 4PKI G; 3C6O B; 3WPH A; 4LSX A; 2JQD A; 4Z94 G; 2Z63 A; 2Z81 A; 3M18 A; 2Q4G W; 4Q62 A; 4B8C D; 4J4L A; 2O6Q A; 4BV4 R; 3BZ5 A; 2OMW A; 4P8S A; 5GS2 B; 4AY9 X; 4P91 A; 1M9S A; 4ECO A; 2P1P B; 4FS7 A; 2Z62 A; 2Z66 A; 3O6N A; 4MN8 B; 4M7E C; 1W8A A; 3DZE A; 5GMH A; 5AWC A; 4BSU A; 1U0N D; 2CA6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
