The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
74
|
sequence length |
303
|
structure length |
303
|
Chain Sequence |
AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the Biglycan Dimer and Evidence That Dimerization Is Essential for Folding and Stability of Class I Small Leucine-rich Repeat Proteoglycans.
pubmed doi rcsb |
| molecule keywords |
Biglycan
|
| molecule tags |
Structural protein, signaling protein
|
| total genus |
74
|
| structure length |
303
|
| sequence length |
303
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2006-01-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01462 | LRRNT | Leucine rich repeat N-terminal domain |
| A | PF13855 | LRR_8 | Leucine rich repeat |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 1W8A A; 2OMU A; 1DCE A; 2V9T B; 3ZYO A; 4TZH A; 3PMH G; 4Z61 C; 5GMG A; 2Z63 A; 2Z65 A; 3RFJ A; 3VQ2 A; 3A79 B; 2Z66 A; 2P1Q B; 2Z81 A; 4Z64 C; 4FCG A; 4PEQ B; 3ULV A; 1Z7X W; 4BSU A; 1JL5 A; 2Y5Q A; 3E2J A; 2OMZ A; 4CC4 A; 3G39 A; 5AWD A; 3UL7 A; 5FTT B; 4PQ8 A; 4QC0 A; 4MN8 B; 4LXR A; 4XGO A; 3WPG A; 4LSA A; 3WPH A; 1O6V A; 1K5G C; 1DS9 A; 1D0B A; 3RIZ A; 3OGK B; 3G04 C; 3C6O B; 3CVR A; 5B0T A; 4KNG A; 4J4L A; 3E4G A; 3M19 A; 3BZ5 A; 2JE0 A; 4RWT C; 2Z64 A; 4KT1 A; 3WPE A; 5CMN A; 5B0N A; 4U09 A; 3P72 A; 3ULA A; 3FXI A; 5CMP A; 3RJ0 A; 5GMH A; 4V2D A; 1GWB A; 3W3N A; 4OQT A; 2Z7X A; 4RCW A; 1M9S A; 1ZIW A; 2P1O B; 3ZYN A; 4I6J B; 3W3M A; 2CA6 A; 4G8A A; 4UFR A; 3TSR E; 4CP6 A; 1OTN A; 2P1M B; 2JQD A; 4LSC A; 3GOZ A; 4M7E A; 4EZG A; 1SQ0 B; 4R58 A; 2ID5 A; 4R6F A; 2Z7X B; 4PKI G; 5B4P A; 4HQ1 A; 1XWD C; 4L3A A; 5AZ5 A; 3OGM B; 4R07 A; 4BV4 R; 4LSX A; 4RCA B; 3W3J A; 5GMF A; 4FHO A; 1P9A G; 2O6S A; 2XWT C; 2V70 A; 4V2C A; 5IJD A; 4LI1 A; 5AWB A; 2O6R A; 4XOS A; 3REZ A; 2FT3 A; 3OGL B; 4FMZ A; 3W3K A; 3VQ1 A; 1O6T A; 4QBZ A; 4FDW A; 3C6P B; 2IFG A; 5HDH A; 4GLP A; 3CIG A; 4Q62 A; 2OMY A; 4ECO A; 1OZN A; 2BEX A; 4J0M A; 5A5C A; 2Z82 A; 1DFJ I; 3WPC A; 3SB4 A; 3G3B A; 1XEC A; 2WFH A; 3G3A A; 3WPB A; 5HZL B; 4WP6 A; 1WWL A; 4P91 A; 3G06 A; 1FS2 A; 2ELL A; 4R6A A; 4LI2 A; 4R6J A; 4NKH A; 1FO1 A; 4WYK A; 3CIY A; 4IM6 A; 1G9U A; 2UZX A; 4ECN A; 5GS2 B; 1H6T A; 5IJC A; 3ZYJ A; 2Z62 A; 3ZYI A; 4PER A; 4ARN A; 4KXF B; 3RGX A; 4B8C D; 1KOH A; 1U0N D; 5IYX C; 4GT6 A; 2RR6 A; 3KJ4 A; 5AWC A; 4U08 A; 1FQV A; 3RFE A; 3RGZ A; 4CC4 C; 2ASS B; 4LXS A; 4K17 A; 4PSJ A; 1QYY A; 1KOO A; 2Q4G W; 5IJB A; 1XKU A; 2BNH A; 1P8V A; 3C6N B; 5GS0 A; 3WN4 A; 5LFN A; 4R5D A; 1M10 B; 1XCD A; 4MQW X; 4R6G A; 4FS7 A; 4H09 A; 4AW4 A; 4Z94 G; 2AST B; 3O6N A; 4R0A A; 4Q3G A; 5D3I A; 3OJA A; 3O53 A; 2P1P B; 3RW7 A; 4P8S A; 4QXE A; 1A4Y A; 3JB9 j; 4Z79 A; 1P8T A; 2R9U A; 3UL8 A; 2P1N B; 2WQX A; 4FD0 A; 4R5C A; 4C2B B; 4NKG A; 4C2A B; 4Z8G A; 1PGV A; 2OMV A; 5GQR K; 3ULU A; 3E3Z A; 4BSS A; 1M9L A; 2UZY A; 1YRG A; 1M0Z A; 3OJA B; 4V2E A; 1OTM A; 1O6S A; 4U06 A; 4R08 A; 2A0Z A; 5AWA A; 2WQU A; 3DZE A; 2OMX A; 4AY9 X; 1H6U A; 2RA8 A; 2JE1 A; 4CNM A; 4U7L A; 4YEB B; 3WPF A; 3W3G A; 1XEU A; 2V9S A; 3RFS A; 4BSR A; 4M7E C; 4R09 A; 4CNC A; 4L3F A; 4Q3I A; 1FT8 A; 2XOT A; 4CIL A; 1K5D C; 4XSQ A; 2WQW A; 3RW6 A; 1IO0 A; 4LSX C; 3E6J A; 2WQV A; 3M18 A; 4ARR A; 4Y61 B; 1OTO A; 2OMT A; 3WPI A; 3UL9 A; 3W3L A; 1OOK G; 3WPD A; 1LTX A; 3UN9 A; 1A9N A; 2O6Q A; 2OMW A; 1OGQ A; #chains in the Genus database with same CATH topology 1W8A A; 2OMU A; 1DCE A; 2V9T B; 3ZYO A; 4TZH A; 3PMH G; 4Z61 C; 5GMG A; 2Z63 A; 2Z65 A; 3RFJ A; 3VQ2 A; 3A79 B; 2Z66 A; 2P1Q B; 2Z81 A; 4Z64 C; 4FCG A; 4PEQ B; 3ULV A; 1Z7X W; 4BSU A; 1JL5 A; 2Y5Q A; 3E2J A; 2OMZ A; 4CC4 A; 3G39 A; 5AWD A; 3UL7 A; 5FTT B; 4PQ8 A; 4QC0 A; 4MN8 B; 4LXR A; 4XGO A; 3WPG A; 4LSA A; 3WPH A; 1O6V A; 1K5G C; 1DS9 A; 1D0B A; 3RIZ A; 3OGK B; 3G04 C; 3C6O B; 3CVR A; 5B0T A; 4KNG A; 4J4L A; 3E4G A; 3M19 A; 3BZ5 A; 2JE0 A; 4RWT C; 2Z64 A; 4KT1 A; 3WPE A; 5CMN A; 5B0N A; 4U09 A; 3P72 A; 3ULA A; 3FXI A; 5CMP A; 3RJ0 A; 5GMH A; 4V2D A; 1GWB A; 3W3N A; 4OQT A; 2Z7X A; 4RCW A; 1M9S A; 1ZIW A; 2P1O B; 3ZYN A; 4I6J B; 3W3M A; 2CA6 A; 4G8A A; 4UFR A; 3TSR E; 4CP6 A; 1OTN A; 2P1M B; 2JQD A; 4LSC A; 3GOZ A; 4M7E A; 4EZG A; 1SQ0 B; 4R58 A; 2ID5 A; 4R6F A; 2Z7X B; 4PKI G; 5B4P A; 4HQ1 A; 1XWD C; 4L3A A; 5AZ5 A; 3OGM B; 4NZT M; 4R07 A; 4BV4 R; 4LSX A; 4RCA B; 3W3J A; 5GMF A; 4FHO A; 1P9A G; 2O6S A; 2XWT C; 2V70 A; 4V2C A; 5IJD A; 4LI1 A; 5AWB A; 2O6R A; 4XOS A; 3REZ A; 2FT3 A; 3OGL B; 4FMZ A; 3W3K A; 3VQ1 A; 1O6T A; 4QBZ A; 4FDW A; 3C6P B; 2IFG A; 5HDH A; 4GLP A; 3CIG A; 4Q62 A; 2OMY A; 4ECO A; 1OZN A; 2BEX A; 4J0M A; 5A5C A; 2Z82 A; 1DFJ I; 3WPC A; 3SB4 A; 3G3B A; 1XEC A; 2WFH A; 3G3A A; 3WPB A; 5HZL B; 4WP6 A; 1WWL A; 4P91 A; 3G06 A; 1FS2 A; 4NZR M; 2ELL A; 4R6A A; 4LI2 A; 4R6J A; 4NKH A; 1FO1 A; 4WYK A; 3CIY A; 4IM6 A; 1G9U A; 2UZX A; 4ECN A; 5GS2 B; 1H6T A; 5IJC A; 3ZYJ A; 2Z62 A; 3ZYI A; 4PER A; 4ARN A; 4KXF B; 3RGX A; 4B8C D; 1KOH A; 1U0N D; 5IYX C; 4GT6 A; 2RR6 A; 3KJ4 A; 5AWC A; 4U08 A; 1FQV A; 3RFE A; 3RGZ A; 4CC4 C; 2ASS B; 4LXS A; 4K17 A; 4PSJ A; 1QYY A; 1KOO A; 2Q4G W; 5IJB A; 1XKU A; 2BNH A; 1P8V A; 3C6N B; 5GS0 A; 3WN4 A; 5LFN A; 4R5D A; 1M10 B; 1XCD A; 4MQW X; 4R6G A; 4FS7 A; 4H09 A; 4AW4 A; 4Z94 G; 2AST B; 3O6N A; 4R0A A; 4Q3G A; 5D3I A; 3OJA A; 3O53 A; 2P1P B; 3RW7 A; 4P8S A; 4QXE A; 1A4Y A; 3JB9 j; 4Z79 A; 1P8T A; 2R9U A; 3UL8 A; 2P1N B; 2WQX A; 4FD0 A; 4R5C A; 4C2B B; 4NKG A; 4C2A B; 4Z8G A; 1PGV A; 2OMV A; 5GQR K; 3ULU A; 3E3Z A; 4BSS A; 1M9L A; 2UZY A; 1YRG A; 1M0Z A; 3OJA B; 4V2E A; 1OTM A; 1O6S A; 4U06 A; 4R08 A; 2A0Z A; 5AWA A; 2WQU A; 3DZE A; 2OMX A; 4AY9 X; 1H6U A; 2RA8 A; 2JE1 A; 4CNM A; 4U7L A; 4YEB B; 3WPF A; 3W3G A; 1XEU A; 2V9S A; 3RFS A; 4BSR A; 4M7E C; 4R09 A; 4CNC A; 4L3F A; 4Q3I A; 1FT8 A; 2XOT A; 4CIL A; 1K5D C; 4XSQ A; 2WQW A; 3RW6 A; 1IO0 A; 4LSX C; 3E6J A; 2WQV A; 3M18 A; 4ARR A; 4Y61 B; 1OTO A; 2OMT A; 3WPI A; 3UL9 A; 3W3L A; 1OOK G; 3WPD A; 1LTX A; 3UN9 A; 1A9N A; 2O6Q A; 2OMW A; 1OGQ A; #chains in the Genus database with same CATH homology 1W8A A; 2OMU A; 1DCE A; 2V9T B; 3ZYO A; 4TZH A; 3PMH G; 4Z61 C; 5GMG A; 2Z63 A; 2Z65 A; 3RFJ A; 3VQ2 A; 3A79 B; 2Z66 A; 2P1Q B; 2Z81 A; 4Z64 C; 4FCG A; 4PEQ B; 3ULV A; 1Z7X W; 4BSU A; 1JL5 A; 2Y5Q A; 3E2J A; 2OMZ A; 4CC4 A; 3G39 A; 5AWD A; 3UL7 A; 5FTT B; 4PQ8 A; 4QC0 A; 4MN8 B; 4LXR A; 4XGO A; 3WPG A; 4LSA A; 3WPH A; 1O6V A; 1K5G C; 1DS9 A; 1D0B A; 3RIZ A; 3OGK B; 3G04 C; 3C6O B; 3CVR A; 5B0T A; 4KNG A; 4J4L A; 3E4G A; 3M19 A; 3BZ5 A; 2JE0 A; 4RWT C; 2Z64 A; 4KT1 A; 3WPE A; 5CMN A; 5B0N A; 4U09 A; 3P72 A; 3ULA A; 3FXI A; 5CMP A; 3RJ0 A; 5GMH A; 4V2D A; 1GWB A; 3W3N A; 4OQT A; 2Z7X A; 4RCW A; 1M9S A; 1ZIW A; 2P1O B; 3ZYN A; 4I6J B; 3W3M A; 2CA6 A; 4G8A A; 4UFR A; 3TSR E; 4CP6 A; 1OTN A; 2P1M B; 2JQD A; 4LSC A; 3GOZ A; 4M7E A; 4EZG A; 1SQ0 B; 4R58 A; 2ID5 A; 4R6F A; 2Z7X B; 4PKI G; 5B4P A; 4HQ1 A; 1XWD C; 4L3A A; 5AZ5 A; 3OGM B; 4R07 A; 4BV4 R; 4LSX A; 4RCA B; 3W3J A; 5GMF A; 4FHO A; 1P9A G; 2O6S A; 2XWT C; 2V70 A; 4V2C A; 5IJD A; 4LI1 A; 5AWB A; 2O6R A; 4XOS A; 3REZ A; 2FT3 A; 3OGL B; 4FMZ A; 3W3K A; 3VQ1 A; 1O6T A; 4QBZ A; 4FDW A; 3C6P B; 2IFG A; 5HDH A; 4GLP A; 3CIG A; 4Q62 A; 2OMY A; 4ECO A; 1OZN A; 2BEX A; 4J0M A; 5A5C A; 2Z82 A; 1DFJ I; 3WPC A; 3SB4 A; 3G3B A; 1XEC A; 2WFH A; 3G3A A; 3WPB A; 5HZL B; 4WP6 A; 1WWL A; 4P91 A; 3G06 A; 1FS2 A; 2ELL A; 4R6A A; 4LI2 A; 4R6J A; 4NKH A; 1FO1 A; 4WYK A; 3CIY A; 4IM6 A; 1G9U A; 2UZX A; 4ECN A; 5GS2 B; 1H6T A; 5IJC A; 3ZYJ A; 2Z62 A; 3ZYI A; 4PER A; 4ARN A; 4KXF B; 3RGX A; 4B8C D; 1KOH A; 1U0N D; 5IYX C; 4GT6 A; 2RR6 A; 3KJ4 A; 5AWC A; 4U08 A; 1FQV A; 3RFE A; 3RGZ A; 4CC4 C; 2ASS B; 4LXS A; 4K17 A; 4PSJ A; 1QYY A; 1KOO A; 2Q4G W; 5IJB A; 1XKU A; 2BNH A; 1P8V A; 3C6N B; 5GS0 A; 3WN4 A; 5LFN A; 4R5D A; 1M10 B; 1XCD A; 4MQW X; 4R6G A; 4FS7 A; 4H09 A; 4AW4 A; 4Z94 G; 2AST B; 3O6N A; 4R0A A; 4Q3G A; 5D3I A; 3OJA A; 3O53 A; 2P1P B; 3RW7 A; 4P8S A; 4QXE A; 1A4Y A; 3JB9 j; 4Z79 A; 1P8T A; 2R9U A; 3UL8 A; 2P1N B; 2WQX A; 4FD0 A; 4R5C A; 4C2B B; 4NKG A; 4C2A B; 4Z8G A; 1PGV A; 2OMV A; 5GQR K; 3ULU A; 3E3Z A; 4BSS A; 1M9L A; 2UZY A; 1YRG A; 1M0Z A; 3OJA B; 4V2E A; 1OTM A; 1O6S A; 4U06 A; 4R08 A; 2A0Z A; 5AWA A; 2WQU A; 3DZE A; 2OMX A; 4AY9 X; 1H6U A; 2RA8 A; 2JE1 A; 4CNM A; 4U7L A; 4YEB B; 3WPF A; 3W3G A; 1XEU A; 2V9S A; 3RFS A; 4BSR A; 4M7E C; 4R09 A; 4CNC A; 4L3F A; 4Q3I A; 1FT8 A; 2XOT A; 4CIL A; 1K5D C; 4XSQ A; 2WQW A; 3RW6 A; 1IO0 A; 4LSX C; 3E6J A; 2WQV A; 3M18 A; 4ARR A; 4Y61 B; 1OTO A; 2OMT A; 3WPI A; 3UL9 A; 3W3L A; 1OOK G; 3WPD A; 1LTX A; 3UN9 A; 1A9N A; 2O6Q A; 2OMW A; 1OGQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
