The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
114
|
structure length |
113
|
Chain Sequence |
PCPAPCSCAGTLVDCGRRGLTALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Quaternary organization of GPIb-IX complex and insights into Bernard-Soulier syndrome revealed by the structures of GPIb beta and a GPIb beta/GPIX chimera
pubmed doi rcsb |
| molecule keywords |
Platelet glycoprotein Ib beta chain, Platelet glycoprotein I
|
| molecule tags |
Cell adhesion
|
| source organism |
Homo sapiens
|
| total genus |
32
|
| structure length |
113
|
| sequence length |
114
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2011-04-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01463 | LRRCT | Leucine rich repeat C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 3W3K A; 2O6Q A; 2V9T B; 1FT8 A; 2R9U A; 4UFR A; 5LFN A; 3RFJ A; 1O6V A; 4LSX C; 2Z66 A; 3ULV A; 1OZN A; 4FDW A; 3G06 A; 4XGO A; 1WWL A; 3RFS A; 4R07 A; 2XOT A; 3M18 A; 1W8A A; 2BEX A; 5HDH A; 4R58 A; 3UN9 A; 4R08 A; 2UZX A; 1DCE A; 4BV4 R; 3WPH A; 2OMY A; 2ASS B; 3C6P B; 3ZYN A; 3OJA B; 4LXR A; 1D0B A; 4K17 A; 1IO0 A; 1M10 B; 1SQ0 B; 2O6S A; 2P1Q B; 3WPB A; 5AZ5 A; 2OMX A; 3OGM B; 2P1P B; 1FO1 A; 3M19 A; 4M7E A; 3OGK B; 2OMU A; 4ECO A; 4GT6 A; 5AWB A; 1K5G C; 1K5D C; 4U7L A; 4QC0 A; 2UZY A; 4LI2 A; 3FXI A; 2OMV A; 4Z8G A; 2Q4G W; 3E2J A; 4Q3G A; 1H6T A; 4J0M A; 2A0Z A; 2P1O B; 2WQW A; 3W3N A; 3W3J A; 4PQ8 A; 2CA6 A; 5GS2 B; 4R6A A; 4Z94 G; 1KOH A; 3O6N A; 3SB4 A; 3OGL B; 4LI1 A; 4OQT A; 3C6O B; 3RGX A; 1XEU A; 4CC4 C; 1M9L A; 1QYY A; 3TSR E; 5IJC A; 1P8V A; 2Z7X B; 2P1N B; 2AST B; 4B8C D; 2Z64 A; 4Z64 C; 4PSJ A; 4V2D A; 5D3I A; 4L3F A; 2WQV A; 4RWT C; 5CMN A; 4PKI G; 2JE1 A; 5B4P A; 5HZL B; 4NKH A; 4P8S A; 1XWD C; 4GLP A; 4J4L A; 1XCD A; 4R6J A; 3PMH G; 1LTX A; 1FS2 A; 3ZYJ A; 3ZYI A; 3UL9 A; 3VQ2 A; 3W3L A; 4FS7 A; 2OMZ A; 3KJ4 A; 2ID5 A; 1KOO A; 1H6U A; 4LSX A; 4KT1 A; 4NKG A; 4U06 A; 3GOZ A; 4BSU A; 1Z7X W; 2ELL A; 3G04 C; 1XKU A; 4G8A A; 4QBZ A; 4P91 A; 3G39 A; 2OMW A; 3WPF A; 4RCW A; 1P8T A; 3REZ A; 3WPI A; 1OGQ A; 4RCA B; 5B0N A; 1OOK G; 3RIZ A; 1ZIW A; 4Q3I A; 4FD0 A; 1FQV A; 3G3B A; 4AY9 X; 4I6J B; 3CIY A; 4WYK A; 4V2E A; 5GQR K; 2IFG A; 2Z81 A; 4HQ1 A; 4XSQ A; 4MQW X; 3E3Z A; 4CIL A; 5IJB A; 1PGV A; 5AWC A; 4H09 A; 3OJA A; 2WQU A; 4LSA A; 4C2A B; 1XEC A; 1G9U A; 3RFE A; 3CVR A; 3BZ5 A; 1O6T A; 3WPE A; 5CMP A; 3UL7 A; 4AW4 A; 4ARN A; 4R0A A; 3WN4 A; 3O53 A; 4ECN A; 4BSS A; 3E6J A; 4ARR A; 4CNC A; 4FMZ A; 4KNG A; 4Z79 A; 2P1M B; 2Z82 A; 4EZG A; 3VQ1 A; 4CC4 A; 4R5D A; 3RJ0 A; 3WPD A; 3ULA A; 3W3G A; 1OTO A; 4CP6 A; 5AWD A; 4PER A; 5GMF A; 3WPG A; 2RR6 A; 1A4Y A; 4FCG A; 3RW6 A; 4LSC A; 5FTT B; 1DS9 A; 2Z63 A; 4FHO A; 4PEQ B; 4XOS A; 2OMT A; 3G3A A; 4M7E C; 1YRG A; 1M9S A; 3JB9 j; 3P72 A; 3UL8 A; 1O6S A; 5GMH A; 5B0T A; 4IM6 A; 4U09 A; 2BNH A; 2WFH A; 2RA8 A; 3C6N B; 2XWT C; 3E4G A; 3A79 B; 1M0Z A; 4LXS A; 5GMG A; 2Z7X A; 4MN8 B; 4V2C A; 1JL5 A; 2Z62 A; 5IJD A; 2JE0 A; 2Z65 A; 4R5C A; 3RGZ A; 1GWB A; 2WQX A; 2O6R A; 2FT3 A; 4TZH A; 2V70 A; 4R6G A; 4R09 A; 4Q62 A; 4BSR A; 3ULU A; 4L3A A; 1DFJ I; 5IYX C; 5AWA A; 5GS0 A; 3W3M A; 4Z61 C; 4Y61 B; 3RW7 A; 4C2B B; 4U08 A; 1A9N A; 2JQD A; 2Y5Q A; 3ZYO A; 1OTM A; 5A5C A; 1U0N D; 4QXE A; 3DZE A; 4CNM A; 1P9A G; 3CIG A; 2V9S A; 4WP6 A; 1OTN A; 4KXF B; 4R6F A; 4YEB B; 3WPC A; #chains in the Genus database with same CATH topology 3W3K A; 2O6Q A; 2V9T B; 1FT8 A; 2R9U A; 4UFR A; 5LFN A; 3RFJ A; 1O6V A; 4LSX C; 2Z66 A; 3ULV A; 1OZN A; 4FDW A; 3G06 A; 4XGO A; 1WWL A; 3RFS A; 4R07 A; 2XOT A; 4NZT M; 3M18 A; 1W8A A; 2BEX A; 5HDH A; 4R58 A; 3UN9 A; 4R08 A; 2UZX A; 1DCE A; 4BV4 R; 3WPH A; 2OMY A; 2ASS B; 3C6P B; 3ZYN A; 3OJA B; 4LXR A; 1D0B A; 4K17 A; 1IO0 A; 1M10 B; 1SQ0 B; 2O6S A; 2P1Q B; 3WPB A; 5AZ5 A; 2OMX A; 3OGM B; 2P1P B; 1FO1 A; 3M19 A; 4M7E A; 3OGK B; 2OMU A; 4ECO A; 4GT6 A; 5AWB A; 1K5G C; 1K5D C; 4U7L A; 4QC0 A; 2UZY A; 4LI2 A; 3FXI A; 2OMV A; 4Z8G A; 2Q4G W; 3E2J A; 4Q3G A; 1H6T A; 4NZR M; 4J0M A; 2A0Z A; 2P1O B; 2WQW A; 3W3N A; 3W3J A; 4PQ8 A; 2CA6 A; 5GS2 B; 4R6A A; 4Z94 G; 1KOH A; 3O6N A; 3SB4 A; 3OGL B; 4LI1 A; 4OQT A; 3C6O B; 3RGX A; 1XEU A; 4CC4 C; 1M9L A; 1QYY A; 3TSR E; 5IJC A; 1P8V A; 2Z7X B; 2P1N B; 2AST B; 4B8C D; 2Z64 A; 4Z64 C; 4PSJ A; 4V2D A; 5D3I A; 4L3F A; 2WQV A; 4RWT C; 5CMN A; 4PKI G; 2JE1 A; 5B4P A; 5HZL B; 4NKH A; 4P8S A; 1XWD C; 4GLP A; 4J4L A; 1XCD A; 4R6J A; 3PMH G; 1LTX A; 1FS2 A; 3ZYJ A; 3ZYI A; 3UL9 A; 3VQ2 A; 3W3L A; 4FS7 A; 2OMZ A; 3KJ4 A; 2ID5 A; 1KOO A; 1H6U A; 4LSX A; 4KT1 A; 4NKG A; 4U06 A; 3GOZ A; 4BSU A; 1Z7X W; 2ELL A; 3G04 C; 1XKU A; 4G8A A; 4QBZ A; 4P91 A; 3G39 A; 2OMW A; 3WPF A; 4RCW A; 1P8T A; 3REZ A; 3WPI A; 1OGQ A; 4RCA B; 5B0N A; 1OOK G; 3RIZ A; 1ZIW A; 4Q3I A; 4FD0 A; 1FQV A; 3G3B A; 4AY9 X; 4I6J B; 3CIY A; 4WYK A; 4V2E A; 5GQR K; 2IFG A; 2Z81 A; 4HQ1 A; 4XSQ A; 4MQW X; 3E3Z A; 4CIL A; 5IJB A; 1PGV A; 5AWC A; 4H09 A; 3OJA A; 2WQU A; 4LSA A; 4C2A B; 1XEC A; 1G9U A; 3RFE A; 3CVR A; 3BZ5 A; 1O6T A; 3WPE A; 5CMP A; 3UL7 A; 4AW4 A; 4ARN A; 4R0A A; 3WN4 A; 3O53 A; 4ECN A; 4BSS A; 3E6J A; 4ARR A; 4CNC A; 4FMZ A; 4KNG A; 4Z79 A; 2P1M B; 2Z82 A; 4EZG A; 3VQ1 A; 4CC4 A; 4R5D A; 3RJ0 A; 3WPD A; 3ULA A; 3W3G A; 1OTO A; 4CP6 A; 5AWD A; 4PER A; 5GMF A; 3WPG A; 2RR6 A; 1A4Y A; 4FCG A; 3RW6 A; 4LSC A; 5FTT B; 1DS9 A; 2Z63 A; 4FHO A; 4PEQ B; 4XOS A; 2OMT A; 3G3A A; 4M7E C; 1YRG A; 1M9S A; 3JB9 j; 3P72 A; 3UL8 A; 1O6S A; 5GMH A; 5B0T A; 4IM6 A; 4U09 A; 2BNH A; 2WFH A; 2RA8 A; 3C6N B; 2XWT C; 3E4G A; 3A79 B; 1M0Z A; 4LXS A; 5GMG A; 2Z7X A; 4MN8 B; 4V2C A; 1JL5 A; 2Z62 A; 5IJD A; 2JE0 A; 2Z65 A; 4R5C A; 3RGZ A; 1GWB A; 2WQX A; 2O6R A; 2FT3 A; 4TZH A; 2V70 A; 4R6G A; 4R09 A; 4Q62 A; 4BSR A; 3ULU A; 4L3A A; 1DFJ I; 5IYX C; 5AWA A; 5GS0 A; 3W3M A; 4Z61 C; 4Y61 B; 3RW7 A; 4C2B B; 4U08 A; 1A9N A; 2JQD A; 2Y5Q A; 3ZYO A; 1OTM A; 5A5C A; 1U0N D; 4QXE A; 3DZE A; 4CNM A; 1P9A G; 3CIG A; 2V9S A; 4WP6 A; 1OTN A; 4KXF B; 4R6F A; 4YEB B; 3WPC A; #chains in the Genus database with same CATH homology 3W3K A; 2O6Q A; 2V9T B; 1FT8 A; 2R9U A; 4UFR A; 5LFN A; 3RFJ A; 1O6V A; 4LSX C; 2Z66 A; 3ULV A; 1OZN A; 4FDW A; 3G06 A; 4XGO A; 1WWL A; 3RFS A; 4R07 A; 2XOT A; 3M18 A; 1W8A A; 2BEX A; 5HDH A; 4R58 A; 3UN9 A; 4R08 A; 2UZX A; 1DCE A; 4BV4 R; 3WPH A; 2OMY A; 2ASS B; 3C6P B; 3ZYN A; 3OJA B; 4LXR A; 1D0B A; 4K17 A; 1IO0 A; 1M10 B; 1SQ0 B; 2O6S A; 2P1Q B; 3WPB A; 5AZ5 A; 2OMX A; 3OGM B; 2P1P B; 1FO1 A; 3M19 A; 4M7E A; 3OGK B; 2OMU A; 4ECO A; 4GT6 A; 5AWB A; 1K5G C; 1K5D C; 4U7L A; 4QC0 A; 2UZY A; 4LI2 A; 3FXI A; 2OMV A; 4Z8G A; 2Q4G W; 3E2J A; 4Q3G A; 1H6T A; 4J0M A; 2A0Z A; 2P1O B; 2WQW A; 3W3N A; 3W3J A; 4PQ8 A; 2CA6 A; 5GS2 B; 4R6A A; 4Z94 G; 1KOH A; 3O6N A; 3SB4 A; 3OGL B; 4LI1 A; 4OQT A; 3C6O B; 3RGX A; 1XEU A; 4CC4 C; 1M9L A; 1QYY A; 3TSR E; 5IJC A; 1P8V A; 2Z7X B; 2P1N B; 2AST B; 4B8C D; 2Z64 A; 4Z64 C; 4PSJ A; 4V2D A; 5D3I A; 4L3F A; 2WQV A; 4RWT C; 5CMN A; 4PKI G; 2JE1 A; 5B4P A; 5HZL B; 4NKH A; 4P8S A; 1XWD C; 4GLP A; 4J4L A; 1XCD A; 4R6J A; 3PMH G; 1LTX A; 1FS2 A; 3ZYJ A; 3ZYI A; 3UL9 A; 3VQ2 A; 3W3L A; 4FS7 A; 2OMZ A; 3KJ4 A; 2ID5 A; 1KOO A; 1H6U A; 4LSX A; 4KT1 A; 4NKG A; 4U06 A; 3GOZ A; 4BSU A; 1Z7X W; 2ELL A; 3G04 C; 1XKU A; 4G8A A; 4QBZ A; 4P91 A; 3G39 A; 2OMW A; 3WPF A; 4RCW A; 1P8T A; 3REZ A; 3WPI A; 1OGQ A; 4RCA B; 5B0N A; 1OOK G; 3RIZ A; 1ZIW A; 4Q3I A; 4FD0 A; 1FQV A; 3G3B A; 4AY9 X; 4I6J B; 3CIY A; 4WYK A; 4V2E A; 5GQR K; 2IFG A; 2Z81 A; 4HQ1 A; 4XSQ A; 4MQW X; 3E3Z A; 4CIL A; 5IJB A; 1PGV A; 5AWC A; 4H09 A; 3OJA A; 2WQU A; 4LSA A; 4C2A B; 1XEC A; 1G9U A; 3RFE A; 3CVR A; 3BZ5 A; 1O6T A; 3WPE A; 5CMP A; 3UL7 A; 4AW4 A; 4ARN A; 4R0A A; 3WN4 A; 3O53 A; 4ECN A; 4BSS A; 3E6J A; 4ARR A; 4CNC A; 4FMZ A; 4KNG A; 4Z79 A; 2P1M B; 2Z82 A; 4EZG A; 3VQ1 A; 4CC4 A; 4R5D A; 3RJ0 A; 3WPD A; 3ULA A; 3W3G A; 1OTO A; 4CP6 A; 5AWD A; 4PER A; 5GMF A; 3WPG A; 2RR6 A; 1A4Y A; 4FCG A; 3RW6 A; 4LSC A; 5FTT B; 1DS9 A; 2Z63 A; 4FHO A; 4PEQ B; 4XOS A; 2OMT A; 3G3A A; 4M7E C; 1YRG A; 1M9S A; 3JB9 j; 3P72 A; 3UL8 A; 1O6S A; 5GMH A; 5B0T A; 4IM6 A; 4U09 A; 2BNH A; 2WFH A; 2RA8 A; 3C6N B; 2XWT C; 3E4G A; 3A79 B; 1M0Z A; 4LXS A; 5GMG A; 2Z7X A; 4MN8 B; 4V2C A; 1JL5 A; 2Z62 A; 5IJD A; 2JE0 A; 2Z65 A; 4R5C A; 3RGZ A; 1GWB A; 2WQX A; 2O6R A; 2FT3 A; 4TZH A; 2V70 A; 4R6G A; 4R09 A; 4Q62 A; 4BSR A; 3ULU A; 4L3A A; 1DFJ I; 5IYX C; 5AWA A; 5GS0 A; 3W3M A; 4Z61 C; 4Y61 B; 3RW7 A; 4C2B B; 4U08 A; 1A9N A; 2JQD A; 2Y5Q A; 3ZYO A; 1OTM A; 5A5C A; 1U0N D; 4QXE A; 3DZE A; 4CNM A; 1P9A G; 3CIG A; 2V9S A; 4WP6 A; 1OTN A; 4KXF B; 4R6F A; 4YEB B; 3WPC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
