The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
81
|
sequence length |
263
|
structure length |
263
|
Chain Sequence |
TITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIIC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
pubmed doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Listeria monocytogenes
|
| molecule keywords |
Internalin B, repeat modules, Variable lymphocyte receptor B
|
| total genus |
81
|
| structure length |
263
|
| sequence length |
263
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-04-06 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 1KOH A; 4Z64 C; 1WWL A; 4KXF B; 3C6P B; 4YEB B; 1OOK G; 3WPC A; 3E4G A; 3UL8 A; 3RJ0 A; 2Z7X A; 3RGZ A; 4LSX A; 2BEX A; 2Z63 A; 4LSA A; 5GMF A; 3A79 B; 3ZYI A; 2Z81 A; 2JE0 A; 4XSQ A; 1KOO A; 3ULV A; 1OZN A; 3RFS A; 1OGQ A; 5AWA A; 2Z82 A; 4Q3I A; 3W3J A; 4Q3G A; 4C2B B; 2OMV A; 4L3F A; 5FTT B; 4V2C A; 4QBZ A; 4TZH A; 4U7L A; 3RIZ A; 2RR6 A; 4FCG A; 4LSC A; 3RFJ A; 2JQD A; 4PKI G; 1A4Y A; 4GLP A; 2OMU A; 4BV4 R; 3KJ4 A; 4QXE A; 5IYX C; 2Z62 A; 4XOS A; 1OTN A; 2XWT C; 5GS0 A; 2UZY A; 3VQ2 A; 5IJB A; 3CIY A; 5HZL B; 3G3B A; 4CNC A; 1XEU A; 2Z64 A; 4J4L A; 4ARN A; 3OJA B; 5B4P A; 4P91 A; 4KNG A; 2OMW A; 4U08 A; 1P9A G; 4R6J A; 4LI1 A; 4G8A A; 5GMG A; 2WQU A; 4AY9 X; 4GT6 A; 4FD0 A; 4V2D A; 4BSS A; 4B8C D; 1D0B A; 4EZG A; 5D3I A; 4M7E C; 5IJD A; 2WQW A; 4CC4 A; 2OMZ A; 4Z79 A; 1DS9 A; 3WPE A; 4FHO A; 4FMZ A; 3WPG A; 2Z65 A; 4R07 A; 3UL7 A; 4RCA B; 4Q62 A; 3ZYJ A; 5LFN A; 4H09 A; 3W3N A; 4Y61 B; 4I6J B; 4IM6 A; 4J0M A; 2V9T B; 3OGK B; 5HDH A; 1H6T A; 2A0Z A; 1XCD A; 3W3L A; 4CIL A; 3G39 A; 5CMP A; 2OMX A; 1FT8 A; 4P8S A; 4CNM A; 2OMT A; 2V70 A; 4C2A B; 4K17 A; 4RCW A; 2P1Q B; 3P72 A; 1P8T A; 1O6V A; 4BSR A; 3FXI A; 1O6S A; 4PSJ A; 2ASS B; 4R0A A; 1FS2 A; 4Z94 G; 5A5C A; 2IFG A; 4LI2 A; 1GWB A; 3E3Z A; 4R5C A; 3RFE A; 3PMH G; 4R5D A; 3OJA A; 3O53 A; 2FT3 A; 2BNH A; 4MN8 B; 4RWT C; 4R58 A; 2ID5 A; 3JB9 j; 4ARR A; 5AWD A; 1A9N A; 4WP6 A; 3WPF A; 3WPD A; 3SB4 A; 5B0T A; 3WN4 A; 1P8V A; 1YRG A; 3ZYO A; 4UFR A; 1U0N D; 5GS2 B; 4KT1 A; 4QC0 A; 4ECO A; 4PEQ B; 2P1M B; 3RW7 A; 2Y5Q A; 4PQ8 A; 2XOT A; 3UL9 A; 1XWD C; 1QYY A; 1Z7X W; 3WPI A; 3ZYN A; 4U09 A; 3RW6 A; 1H6U A; 2O6Q A; 4LSX C; 1O6T A; 4FS7 A; 3CIG A; 4FDW A; 4ECN A; 2R9U A; 3WPB A; 4R6G A; 3RGX A; 4V2E A; 2JE1 A; 1K5D C; 2CA6 A; 4NKG A; 4LXR A; 1ZIW A; 1K5G C; 1OTO A; 3M19 A; 4HQ1 A; 3TSR E; 4M7E A; 1G9U A; 2Q4G W; 5GMH A; 2RA8 A; 3G3A A; 2Z66 A; 3OGL B; 2Z7X B; 4NKH A; 2UZX A; 5IJC A; 1PGV A; 2WQV A; 4U06 A; 2AST B; 2P1N B; 4BSU A; 2OMY A; 3M18 A; 3BZ5 A; 5CMN A; 3UN9 A; 1JL5 A; 4R09 A; 3GOZ A; 1XKU A; 2WQX A; 4Z8G A; 3W3K A; 1DFJ I; 3G04 C; 4OQT A; 1M9L A; 2P1P B; 1OTM A; 4Z61 C; 1LTX A; 5GQR K; 3G06 A; 5AZ5 A; 5AWC A; 2WFH A; 2V9S A; 2O6R A; 1SQ0 B; 3OGM B; 3E6J A; 3W3G A; 4L3A A; 3DZE A; 3REZ A; 3O6N A; 1FQV A; 1M9S A; 4R6F A; 1IO0 A; 3ULU A; 4WYK A; 4LXS A; 1DCE A; 1M0Z A; 3WPH A; 3VQ1 A; 4XGO A; 2ELL A; 4R6A A; 1W8A A; 1XEC A; 2O6S A; 3CVR A; 3ULA A; 3E2J A; 5B0N A; 5AWB A; 4R08 A; 2P1O B; 4CC4 C; 1M10 B; 4CP6 A; 3C6O B; 1FO1 A; 3W3M A; 4MQW X; 3C6N B; 4AW4 A; 4PER A; #chains in the Genus database with same CATH topology 1KOH A; 4Z64 C; 1WWL A; 4KXF B; 3C6P B; 4YEB B; 1OOK G; 3WPC A; 3E4G A; 3UL8 A; 3RJ0 A; 2Z7X A; 3RGZ A; 4LSX A; 2BEX A; 2Z63 A; 4LSA A; 5GMF A; 3A79 B; 3ZYI A; 2Z81 A; 2JE0 A; 4XSQ A; 1KOO A; 3ULV A; 1OZN A; 3RFS A; 1OGQ A; 5AWA A; 2Z82 A; 4Q3I A; 3W3J A; 4Q3G A; 4C2B B; 2OMV A; 4L3F A; 5FTT B; 4V2C A; 4QBZ A; 4TZH A; 4U7L A; 3RIZ A; 2RR6 A; 4FCG A; 4LSC A; 3RFJ A; 2JQD A; 4PKI G; 1A4Y A; 4GLP A; 2OMU A; 4BV4 R; 3KJ4 A; 4QXE A; 5IYX C; 2Z62 A; 4XOS A; 1OTN A; 2XWT C; 5GS0 A; 2UZY A; 3VQ2 A; 5IJB A; 3CIY A; 5HZL B; 3G3B A; 4CNC A; 1XEU A; 2Z64 A; 4J4L A; 4ARN A; 3OJA B; 5B4P A; 4P91 A; 4KNG A; 2OMW A; 4U08 A; 1P9A G; 4R6J A; 4LI1 A; 4G8A A; 5GMG A; 2WQU A; 4AY9 X; 4GT6 A; 4FD0 A; 4V2D A; 4BSS A; 4B8C D; 1D0B A; 4EZG A; 5D3I A; 4M7E C; 5IJD A; 2WQW A; 4CC4 A; 2OMZ A; 4Z79 A; 1DS9 A; 3WPE A; 4FHO A; 4FMZ A; 3WPG A; 2Z65 A; 4R07 A; 3UL7 A; 4RCA B; 4Q62 A; 3ZYJ A; 5LFN A; 4H09 A; 3W3N A; 4Y61 B; 4I6J B; 4IM6 A; 4J0M A; 2V9T B; 3OGK B; 5HDH A; 1H6T A; 2A0Z A; 1XCD A; 3W3L A; 4CIL A; 3G39 A; 5CMP A; 2OMX A; 1FT8 A; 4P8S A; 4CNM A; 2OMT A; 4NZT M; 2V70 A; 4C2A B; 4K17 A; 4RCW A; 2P1Q B; 3P72 A; 1P8T A; 1O6V A; 4BSR A; 3FXI A; 1O6S A; 4PSJ A; 2ASS B; 4R0A A; 1FS2 A; 4Z94 G; 5A5C A; 2IFG A; 4LI2 A; 1GWB A; 3E3Z A; 4R5C A; 3RFE A; 3PMH G; 4R5D A; 3OJA A; 3O53 A; 4NZR M; 2FT3 A; 2BNH A; 4MN8 B; 4RWT C; 4R58 A; 2ID5 A; 3JB9 j; 4ARR A; 5AWD A; 1A9N A; 4WP6 A; 3WPF A; 3WPD A; 3SB4 A; 5B0T A; 3WN4 A; 1P8V A; 1YRG A; 3ZYO A; 4UFR A; 1U0N D; 5GS2 B; 4KT1 A; 4QC0 A; 4ECO A; 4PEQ B; 2P1M B; 3RW7 A; 2Y5Q A; 4PQ8 A; 2XOT A; 3UL9 A; 1XWD C; 1QYY A; 1Z7X W; 3WPI A; 3ZYN A; 4U09 A; 3RW6 A; 1H6U A; 2O6Q A; 4LSX C; 1O6T A; 4FS7 A; 3CIG A; 4FDW A; 4ECN A; 2R9U A; 3WPB A; 4R6G A; 3RGX A; 4V2E A; 2JE1 A; 1K5D C; 2CA6 A; 4NKG A; 4LXR A; 1ZIW A; 1K5G C; 1OTO A; 3M19 A; 4HQ1 A; 3TSR E; 4M7E A; 1G9U A; 2Q4G W; 5GMH A; 2RA8 A; 3G3A A; 2Z66 A; 3OGL B; 2Z7X B; 4NKH A; 2UZX A; 5IJC A; 1PGV A; 2WQV A; 4U06 A; 2AST B; 2P1N B; 4BSU A; 2OMY A; 3M18 A; 3BZ5 A; 5CMN A; 3UN9 A; 1JL5 A; 4R09 A; 3GOZ A; 1XKU A; 2WQX A; 4Z8G A; 3W3K A; 1DFJ I; 3G04 C; 4OQT A; 1M9L A; 2P1P B; 1OTM A; 4Z61 C; 1LTX A; 5GQR K; 3G06 A; 5AZ5 A; 5AWC A; 2WFH A; 2V9S A; 2O6R A; 1SQ0 B; 3OGM B; 3E6J A; 3W3G A; 4L3A A; 3DZE A; 3REZ A; 3O6N A; 1FQV A; 1M9S A; 4R6F A; 1IO0 A; 3ULU A; 4WYK A; 4LXS A; 1DCE A; 1M0Z A; 3WPH A; 3VQ1 A; 4XGO A; 2ELL A; 4R6A A; 1W8A A; 1XEC A; 2O6S A; 3CVR A; 3ULA A; 3E2J A; 5B0N A; 5AWB A; 4R08 A; 2P1O B; 4CC4 C; 1M10 B; 4CP6 A; 3C6O B; 1FO1 A; 3W3M A; 4MQW X; 3C6N B; 4AW4 A; 4PER A; #chains in the Genus database with same CATH homology 1KOH A; 4Z64 C; 1WWL A; 4KXF B; 3C6P B; 4YEB B; 1OOK G; 3WPC A; 3E4G A; 3UL8 A; 3RJ0 A; 2Z7X A; 3RGZ A; 4LSX A; 2BEX A; 2Z63 A; 4LSA A; 5GMF A; 3A79 B; 3ZYI A; 2Z81 A; 2JE0 A; 4XSQ A; 1KOO A; 3ULV A; 1OZN A; 3RFS A; 1OGQ A; 5AWA A; 2Z82 A; 4Q3I A; 3W3J A; 4Q3G A; 4C2B B; 2OMV A; 4L3F A; 5FTT B; 4V2C A; 4QBZ A; 4TZH A; 4U7L A; 3RIZ A; 2RR6 A; 4FCG A; 4LSC A; 3RFJ A; 2JQD A; 4PKI G; 1A4Y A; 4GLP A; 2OMU A; 4BV4 R; 3KJ4 A; 4QXE A; 5IYX C; 2Z62 A; 4XOS A; 1OTN A; 2XWT C; 5GS0 A; 2UZY A; 3VQ2 A; 5IJB A; 3CIY A; 5HZL B; 3G3B A; 4CNC A; 1XEU A; 2Z64 A; 4J4L A; 4ARN A; 3OJA B; 5B4P A; 4P91 A; 4KNG A; 2OMW A; 4U08 A; 1P9A G; 4R6J A; 4LI1 A; 4G8A A; 5GMG A; 2WQU A; 4AY9 X; 4GT6 A; 4FD0 A; 4V2D A; 4BSS A; 4B8C D; 1D0B A; 4EZG A; 5D3I A; 4M7E C; 5IJD A; 2WQW A; 4CC4 A; 2OMZ A; 4Z79 A; 1DS9 A; 3WPE A; 4FHO A; 4FMZ A; 3WPG A; 2Z65 A; 4R07 A; 3UL7 A; 4RCA B; 4Q62 A; 3ZYJ A; 5LFN A; 4H09 A; 3W3N A; 4Y61 B; 4I6J B; 4IM6 A; 4J0M A; 2V9T B; 3OGK B; 5HDH A; 1H6T A; 2A0Z A; 1XCD A; 3W3L A; 4CIL A; 3G39 A; 5CMP A; 2OMX A; 1FT8 A; 4P8S A; 4CNM A; 2OMT A; 2V70 A; 4C2A B; 4K17 A; 4RCW A; 2P1Q B; 3P72 A; 1P8T A; 1O6V A; 4BSR A; 3FXI A; 1O6S A; 4PSJ A; 2ASS B; 4R0A A; 1FS2 A; 4Z94 G; 5A5C A; 2IFG A; 4LI2 A; 1GWB A; 3E3Z A; 4R5C A; 3RFE A; 3PMH G; 4R5D A; 3OJA A; 3O53 A; 2FT3 A; 2BNH A; 4MN8 B; 4RWT C; 4R58 A; 2ID5 A; 3JB9 j; 4ARR A; 5AWD A; 1A9N A; 4WP6 A; 3WPF A; 3WPD A; 3SB4 A; 5B0T A; 3WN4 A; 1P8V A; 1YRG A; 3ZYO A; 4UFR A; 1U0N D; 5GS2 B; 4KT1 A; 4QC0 A; 4ECO A; 4PEQ B; 2P1M B; 3RW7 A; 2Y5Q A; 4PQ8 A; 2XOT A; 3UL9 A; 1XWD C; 1QYY A; 1Z7X W; 3WPI A; 3ZYN A; 4U09 A; 3RW6 A; 1H6U A; 2O6Q A; 4LSX C; 1O6T A; 4FS7 A; 3CIG A; 4FDW A; 4ECN A; 2R9U A; 3WPB A; 4R6G A; 3RGX A; 4V2E A; 2JE1 A; 1K5D C; 2CA6 A; 4NKG A; 4LXR A; 1ZIW A; 1K5G C; 1OTO A; 3M19 A; 4HQ1 A; 3TSR E; 4M7E A; 1G9U A; 2Q4G W; 5GMH A; 2RA8 A; 3G3A A; 2Z66 A; 3OGL B; 2Z7X B; 4NKH A; 2UZX A; 5IJC A; 1PGV A; 2WQV A; 4U06 A; 2AST B; 2P1N B; 4BSU A; 2OMY A; 3M18 A; 3BZ5 A; 5CMN A; 3UN9 A; 1JL5 A; 4R09 A; 3GOZ A; 1XKU A; 2WQX A; 4Z8G A; 3W3K A; 1DFJ I; 3G04 C; 4OQT A; 1M9L A; 2P1P B; 1OTM A; 4Z61 C; 1LTX A; 5GQR K; 3G06 A; 5AZ5 A; 5AWC A; 2WFH A; 2V9S A; 2O6R A; 1SQ0 B; 3OGM B; 3E6J A; 3W3G A; 4L3A A; 3DZE A; 3REZ A; 3O6N A; 1FQV A; 1M9S A; 4R6F A; 1IO0 A; 3ULU A; 4WYK A; 4LXS A; 1DCE A; 1M0Z A; 3WPH A; 3VQ1 A; 4XGO A; 2ELL A; 4R6A A; 1W8A A; 1XEC A; 2O6S A; 3CVR A; 3ULA A; 3E2J A; 5B0N A; 5AWB A; 4R08 A; 2P1O B; 4CC4 C; 1M10 B; 4CP6 A; 3C6O B; 1FO1 A; 3W3M A; 4MQW X; 3C6N B; 4AW4 A; 4PER A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
