The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
61
|
sequence length |
186
|
structure length |
186
|
Chain Sequence |
NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGDLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTQITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCPG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.
pubmed doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Arabidopsis thaliana
|
| molecule keywords |
Somatic embryogenesis receptor kinase 1
|
| total genus |
61
|
| structure length |
186
|
| sequence length |
186
|
| ec nomenclature |
ec
2.7.10.1: Receptor protein-tyrosine kinase. |
| pdb deposition date | 2013-07-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08263 | LRRNT_2 | Leucine rich repeat N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 4B8C D; 4ECO A; 3RGZ A; 2Z81 A; 3OGK B; 4LSA A; 2UZX A; 4J4L A; 2WFH A; 4U06 A; 4I6J B; 4C2B B; 2ELL A; 4ARN A; 4OQT A; 5IJB A; 4C2A B; 5FTT B; 5AWB A; 4AW4 A; 5B0T A; 3ZYO A; 1GWB A; 4G8A A; 3FXI A; 1KOH A; 3G06 A; 3RW6 A; 1DFJ I; 4NKG A; 3RFE A; 4P91 A; 4AY9 X; 4Z61 C; 5IYX C; 3G3B A; 3SB4 A; 3ZYI A; 2Z66 A; 5GQR K; 3OJA A; 2OMT A; 3WPD A; 2Q4G W; 1PGV A; 3M18 A; 4BSR A; 5GMF A; 3G39 A; 3G04 C; 4NKH A; 3RFS A; 3UL8 A; 4ECN A; 4QC0 A; 2OMU A; 1M10 B; 4U09 A; 1P8T A; 4R07 A; 4M7E C; 1K5G C; 4Q62 A; 4BV4 R; 4J0M A; 4ARR A; 4R5C A; 2RA8 A; 4Z79 A; 5D3I A; 2Z64 A; 1OTM A; 4FHO A; 3WPB A; 3UL9 A; 2RR6 A; 3C6N B; 4L3A A; 4R6J A; 2V9T B; 5GMH A; 2O6S A; 4Z94 G; 4M7E A; 3DZE A; 3RGX A; 1OZN A; 3BZ5 A; 2OMV A; 3WN4 A; 4R58 A; 1DS9 A; 2WQU A; 3G3A A; 2V70 A; 4LXS A; 4MQW X; 4WP6 A; 3KJ4 A; 1W8A A; 4TZH A; 4U08 A; 4LSX A; 5A5C A; 5IJD A; 1YRG A; 5GS0 A; 4Q3G A; 1U0N D; 1JL5 A; 4PKI G; 4LXR A; 2JE1 A; 3ULV A; 1K5D C; 3WPC A; 2AST B; 4UFR A; 3VQ1 A; 3PMH G; 4Z8G A; 4FD0 A; 2ID5 A; 4H09 A; 4P8S A; 1A4Y A; 2ASS B; 5HZL B; 1WWL A; 3C6P B; 3RIZ A; 5CMN A; 1M0Z A; 2BEX A; 1A9N A; 4QBZ A; 3JB9 j; 3W3L A; 2P1Q B; 4HQ1 A; 4GT6 A; 4V2D A; 4BSU A; 3TSR E; 1FS2 A; 3O53 A; 3A79 B; 4XGO A; 2JE0 A; 3RJ0 A; 1D0B A; 4QXE A; 4FS7 A; 4V2C A; 3OGL B; 1XEU A; 3W3M A; 4LSC A; 2OMZ A; 2WQX A; 3UN9 A; 3P72 A; 2Z7X B; 3M19 A; 5B0N A; 2P1P B; 4V2E A; 2A0Z A; 2Y5Q A; 4FDW A; 3OJA B; 4RCW A; 3OGM B; 1OTN A; 4XOS A; 3E3Z A; 1OGQ A; 5LFN A; 2XWT C; 3E6J A; 4R6F A; 5CMP A; 3WPF A; 2P1N B; 3RW7 A; 1FQV A; 1P9A G; 4FCG A; 1H6T A; 2FT3 A; 2V9S A; 2O6R A; 3WPG A; 4CNC A; 4R5D A; 2O6Q A; 3ULA A; 5AWD A; 1OTO A; 3UL7 A; 4LSX C; 3W3N A; 3E2J A; 1SQ0 B; 5AWA A; 3RFJ A; 1XEC A; 4BSS A; 1LTX A; 1O6T A; 5GS2 B; 4Y61 B; 4R09 A; 4GLP A; 1ZIW A; 4YEB B; 1M9S A; 5IJC A; 3O6N A; 4PQ8 A; 1QYY A; 4CNM A; 2OMW A; 4U7L A; 4CIL A; 2IFG A; 4RWT C; 2P1O B; 2WQW A; 1Z7X W; 2Z62 A; 2WQV A; 4CC4 C; 2Z82 A; 4PER A; 1O6S A; 4PEQ B; 3CIY A; 4LI2 A; 4L3F A; 5B4P A; 1G9U A; 3WPH A; 4PSJ A; 4IM6 A; 4WYK A; 5AZ5 A; 5GMG A; 4R6A A; 3W3K A; 2OMY A; 4XSQ A; 4KXF B; 4K17 A; 2Z63 A; 4KT1 A; 3E4G A; 4CC4 A; 3REZ A; 1H6U A; 4FMZ A; 2XOT A; 3WPE A; 3ZYN A; 1FT8 A; 4R6G A; 4Q3I A; 2BNH A; 3ZYJ A; 5AWC A; 4R0A A; 4Z64 C; 3ULU A; 3GOZ A; 4LI1 A; 2R9U A; 1FO1 A; 1M9L A; 3WPI A; 4EZG A; 2OMX A; 3W3G A; 3W3J A; 2JQD A; 4KNG A; 5HDH A; 4CP6 A; 3CVR A; 1KOO A; 1O6V A; 4R08 A; 4RCA B; 2Z65 A; 1OOK G; 1DCE A; 2CA6 A; 1XCD A; 1XWD C; 1IO0 A; 2UZY A; 2Z7X A; 1P8V A; 3C6O B; 2P1M B; 1XKU A; 3VQ2 A; 4MN8 B; 3CIG A; #chains in the Genus database with same CATH topology 4B8C D; 4ECO A; 3RGZ A; 2Z81 A; 3OGK B; 4LSA A; 2UZX A; 4J4L A; 2WFH A; 4U06 A; 4I6J B; 4C2B B; 2ELL A; 4ARN A; 4OQT A; 5IJB A; 4C2A B; 5FTT B; 5AWB A; 4AW4 A; 5B0T A; 3ZYO A; 1GWB A; 4G8A A; 3FXI A; 1KOH A; 3G06 A; 3RW6 A; 1DFJ I; 4NKG A; 3RFE A; 4P91 A; 4AY9 X; 4Z61 C; 5IYX C; 3G3B A; 3SB4 A; 3ZYI A; 2Z66 A; 5GQR K; 3OJA A; 2OMT A; 3WPD A; 2Q4G W; 1PGV A; 3M18 A; 4BSR A; 5GMF A; 3G39 A; 3G04 C; 4NKH A; 3RFS A; 3UL8 A; 4ECN A; 4QC0 A; 2OMU A; 1M10 B; 4U09 A; 1P8T A; 4R07 A; 4M7E C; 1K5G C; 4Q62 A; 4BV4 R; 4J0M A; 4ARR A; 4R5C A; 2RA8 A; 4Z79 A; 5D3I A; 2Z64 A; 1OTM A; 4FHO A; 3WPB A; 3UL9 A; 2RR6 A; 3C6N B; 4L3A A; 4R6J A; 2V9T B; 5GMH A; 2O6S A; 4Z94 G; 4M7E A; 3DZE A; 3RGX A; 1OZN A; 3BZ5 A; 2OMV A; 3WN4 A; 4R58 A; 1DS9 A; 2WQU A; 3G3A A; 2V70 A; 4LXS A; 4MQW X; 4WP6 A; 3KJ4 A; 1W8A A; 4TZH A; 4U08 A; 4LSX A; 5A5C A; 5IJD A; 1YRG A; 5GS0 A; 4Q3G A; 1U0N D; 1JL5 A; 4PKI G; 4LXR A; 2JE1 A; 3ULV A; 1K5D C; 3WPC A; 2AST B; 4UFR A; 3VQ1 A; 3PMH G; 4Z8G A; 4FD0 A; 2ID5 A; 4H09 A; 4P8S A; 1A4Y A; 2ASS B; 5HZL B; 1WWL A; 3C6P B; 3RIZ A; 5CMN A; 1M0Z A; 2BEX A; 1A9N A; 4QBZ A; 3JB9 j; 3W3L A; 2P1Q B; 4HQ1 A; 4GT6 A; 4V2D A; 4BSU A; 3TSR E; 1FS2 A; 3O53 A; 3A79 B; 4XGO A; 2JE0 A; 3RJ0 A; 1D0B A; 4QXE A; 4FS7 A; 4V2C A; 3OGL B; 1XEU A; 3W3M A; 4LSC A; 2OMZ A; 2WQX A; 3UN9 A; 3P72 A; 2Z7X B; 3M19 A; 5B0N A; 2P1P B; 4NZT M; 4V2E A; 2A0Z A; 2Y5Q A; 4FDW A; 3OJA B; 4RCW A; 3OGM B; 1OTN A; 4XOS A; 3E3Z A; 1OGQ A; 5LFN A; 2XWT C; 3E6J A; 4R6F A; 5CMP A; 3WPF A; 2P1N B; 3RW7 A; 1FQV A; 1P9A G; 4FCG A; 1H6T A; 2FT3 A; 2V9S A; 2O6R A; 3WPG A; 4CNC A; 4R5D A; 2O6Q A; 3ULA A; 5AWD A; 1OTO A; 3UL7 A; 4LSX C; 3W3N A; 3E2J A; 1SQ0 B; 5AWA A; 3RFJ A; 1XEC A; 4BSS A; 1LTX A; 1O6T A; 5GS2 B; 4Y61 B; 4R09 A; 4GLP A; 1ZIW A; 4YEB B; 1M9S A; 5IJC A; 3O6N A; 4PQ8 A; 1QYY A; 4CNM A; 2OMW A; 4U7L A; 4CIL A; 2IFG A; 4RWT C; 2P1O B; 2WQW A; 1Z7X W; 2Z62 A; 2WQV A; 4CC4 C; 2Z82 A; 4PER A; 1O6S A; 4PEQ B; 3CIY A; 4LI2 A; 4L3F A; 5B4P A; 1G9U A; 3WPH A; 4PSJ A; 4IM6 A; 4WYK A; 5AZ5 A; 5GMG A; 4R6A A; 3W3K A; 2OMY A; 4XSQ A; 4KXF B; 4K17 A; 2Z63 A; 4KT1 A; 3E4G A; 4NZR M; 4CC4 A; 3REZ A; 1H6U A; 4FMZ A; 2XOT A; 3WPE A; 3ZYN A; 1FT8 A; 4R6G A; 4Q3I A; 2BNH A; 3ZYJ A; 5AWC A; 4R0A A; 4Z64 C; 3ULU A; 3GOZ A; 4LI1 A; 2R9U A; 1FO1 A; 1M9L A; 3WPI A; 4EZG A; 2OMX A; 3W3G A; 3W3J A; 2JQD A; 4KNG A; 5HDH A; 4CP6 A; 3CVR A; 1KOO A; 1O6V A; 4R08 A; 4RCA B; 2Z65 A; 1OOK G; 1DCE A; 2CA6 A; 1XCD A; 1XWD C; 1IO0 A; 2UZY A; 2Z7X A; 1P8V A; 3C6O B; 2P1M B; 1XKU A; 3VQ2 A; 4MN8 B; 3CIG A; #chains in the Genus database with same CATH homology 4B8C D; 4ECO A; 3RGZ A; 2Z81 A; 3OGK B; 4LSA A; 2UZX A; 4J4L A; 2WFH A; 4U06 A; 4I6J B; 4C2B B; 2ELL A; 4ARN A; 4OQT A; 5IJB A; 4C2A B; 5FTT B; 5AWB A; 4AW4 A; 5B0T A; 3ZYO A; 1GWB A; 4G8A A; 3FXI A; 1KOH A; 3G06 A; 3RW6 A; 1DFJ I; 4NKG A; 3RFE A; 4P91 A; 4AY9 X; 4Z61 C; 5IYX C; 3G3B A; 3SB4 A; 3ZYI A; 2Z66 A; 5GQR K; 3OJA A; 2OMT A; 3WPD A; 2Q4G W; 1PGV A; 3M18 A; 4BSR A; 5GMF A; 3G39 A; 3G04 C; 4NKH A; 3RFS A; 3UL8 A; 4ECN A; 4QC0 A; 2OMU A; 1M10 B; 4U09 A; 1P8T A; 4R07 A; 4M7E C; 1K5G C; 4Q62 A; 4BV4 R; 4J0M A; 4ARR A; 4R5C A; 2RA8 A; 4Z79 A; 5D3I A; 2Z64 A; 1OTM A; 4FHO A; 3WPB A; 3UL9 A; 2RR6 A; 3C6N B; 4L3A A; 4R6J A; 2V9T B; 5GMH A; 2O6S A; 4Z94 G; 4M7E A; 3DZE A; 3RGX A; 1OZN A; 3BZ5 A; 2OMV A; 3WN4 A; 4R58 A; 1DS9 A; 2WQU A; 3G3A A; 2V70 A; 4LXS A; 4MQW X; 4WP6 A; 3KJ4 A; 1W8A A; 4TZH A; 4U08 A; 4LSX A; 5A5C A; 5IJD A; 1YRG A; 5GS0 A; 4Q3G A; 1U0N D; 1JL5 A; 4PKI G; 4LXR A; 2JE1 A; 3ULV A; 1K5D C; 3WPC A; 2AST B; 4UFR A; 3VQ1 A; 3PMH G; 4Z8G A; 4FD0 A; 2ID5 A; 4H09 A; 4P8S A; 1A4Y A; 2ASS B; 5HZL B; 1WWL A; 3C6P B; 3RIZ A; 5CMN A; 1M0Z A; 2BEX A; 1A9N A; 4QBZ A; 3JB9 j; 3W3L A; 2P1Q B; 4HQ1 A; 4GT6 A; 4V2D A; 4BSU A; 3TSR E; 1FS2 A; 3O53 A; 3A79 B; 4XGO A; 2JE0 A; 3RJ0 A; 1D0B A; 4QXE A; 4FS7 A; 4V2C A; 3OGL B; 1XEU A; 3W3M A; 4LSC A; 2OMZ A; 2WQX A; 3UN9 A; 3P72 A; 2Z7X B; 3M19 A; 5B0N A; 2P1P B; 4V2E A; 2A0Z A; 2Y5Q A; 4FDW A; 3OJA B; 4RCW A; 3OGM B; 1OTN A; 4XOS A; 3E3Z A; 1OGQ A; 5LFN A; 2XWT C; 3E6J A; 4R6F A; 5CMP A; 3WPF A; 2P1N B; 3RW7 A; 1FQV A; 1P9A G; 4FCG A; 1H6T A; 2FT3 A; 2V9S A; 2O6R A; 3WPG A; 4CNC A; 4R5D A; 2O6Q A; 3ULA A; 5AWD A; 1OTO A; 3UL7 A; 4LSX C; 3W3N A; 3E2J A; 1SQ0 B; 5AWA A; 3RFJ A; 1XEC A; 4BSS A; 1LTX A; 1O6T A; 5GS2 B; 4Y61 B; 4R09 A; 4GLP A; 1ZIW A; 4YEB B; 1M9S A; 5IJC A; 3O6N A; 4PQ8 A; 1QYY A; 4CNM A; 2OMW A; 4U7L A; 4CIL A; 2IFG A; 4RWT C; 2P1O B; 2WQW A; 1Z7X W; 2Z62 A; 2WQV A; 4CC4 C; 2Z82 A; 4PER A; 1O6S A; 4PEQ B; 3CIY A; 4LI2 A; 4L3F A; 5B4P A; 1G9U A; 3WPH A; 4PSJ A; 4IM6 A; 4WYK A; 5AZ5 A; 5GMG A; 4R6A A; 3W3K A; 2OMY A; 4XSQ A; 4KXF B; 4K17 A; 2Z63 A; 4KT1 A; 3E4G A; 4CC4 A; 3REZ A; 1H6U A; 4FMZ A; 2XOT A; 3WPE A; 3ZYN A; 1FT8 A; 4R6G A; 4Q3I A; 2BNH A; 3ZYJ A; 5AWC A; 4R0A A; 4Z64 C; 3ULU A; 3GOZ A; 4LI1 A; 2R9U A; 1FO1 A; 1M9L A; 3WPI A; 4EZG A; 2OMX A; 3W3G A; 3W3J A; 2JQD A; 4KNG A; 5HDH A; 4CP6 A; 3CVR A; 1KOO A; 1O6V A; 4R08 A; 4RCA B; 2Z65 A; 1OOK G; 1DCE A; 2CA6 A; 1XCD A; 1XWD C; 1IO0 A; 2UZY A; 2Z7X A; 1P8V A; 3C6O B; 2P1M B; 1XKU A; 3VQ2 A; 4MN8 B; 3CIG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
