The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
65
|
sequence length |
236
|
structure length |
236
|
Chain Sequence |
EYDAVWSKWERDAPAGESPGRAAVVQEMRDCLNNGNPVLNVGASGLTTLPDRLPPHITTLVIPDNNLTSLPELPEGLRELEVSGNLQLTSLPSLPQGLQKLWAYNNWLASLPTLPPGLGDLAVSNNQLTSLPEMPPALRELRVSGNNLTSLPALPSGLQKLWAYNNRLTSLPEMSPGLQELDVSHNQLTRLPQSLTGLSSAARVYLDGNPLSVRTLQALRDIIGHSGIRIHFDMAG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| source organism |
Salmonella enterica subsp. enterica serovar typhimurium
|
| publication title |
Structure of an SspH1-PKN1 Complex Reveals the Basis for Host Substrate Recognition and Mechanism of Activation for a Bacterial E3 Ubiquitin Ligase.
pubmed doi rcsb |
| molecule keywords |
E3 ubiquitin-protein ligase sspH1
|
| total genus |
65
|
| structure length |
236
|
| sequence length |
236
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2013-11-12 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 2OMU A; 5CMN A; 4CP6 A; 4YEB B; 4LSC A; 4R0A A; 2Y5Q A; 4CC4 A; 3W3L A; 3G04 C; 4FD0 A; 5IJB A; 2WQX A; 1H6T A; 1XCD A; 1W8A A; 4ECO A; 5D3I A; 5GS0 A; 2JE1 A; 5AWD A; 3C6P B; 4KXF B; 2Z7X A; 3FXI A; 3RW7 A; 1O6T A; 4Z94 G; 4R58 A; 1D0B A; 2JQD A; 2OMW A; 2WQU A; 2FT3 A; 4LSA A; 4Z64 C; 2XWT C; 4H09 A; 2RA8 A; 4CIL A; 4GT6 A; 4V2C A; 1WWL A; 1FS2 A; 4EZG A; 4R6A A; 3VQ1 A; 3BZ5 A; 2WFH A; 1QYY A; 5B4P A; 4R5D A; 3UL9 A; 2Z7X B; 4P91 A; 2ASS B; 2OMZ A; 4I6J B; 2O6R A; 5AZ5 A; 4J4L A; 4U7L A; 4U06 A; 4FMZ A; 4U08 A; 2Z62 A; 2WQV A; 1KOH A; 5GMH A; 3RFS A; 1M9L A; 3SB4 A; 2IFG A; 1FT8 A; 1XEU A; 4XOS A; 2JE0 A; 2BNH A; 1O6V A; 4Q3G A; 2P1M B; 4RWT C; 1IO0 A; 3DZE A; 1M9S A; 3W3M A; 3O53 A; 2O6S A; 4HQ1 A; 4PKI G; 3RFJ A; 4V2D A; 2P1N B; 4R07 A; 3OGK B; 3P72 A; 1K5D C; 4R6F A; 1M0Z A; 2OMT A; 4RCW A; 4P8S A; 2Z64 A; 2Z65 A; 4FDW A; 3A79 B; 4L3A A; 5A5C A; 3WPG A; 5HZL B; 4Z61 C; 4U09 A; 2OMY A; 3REZ A; 3G39 A; 2Z81 A; 5CMP A; 1DFJ I; 4QXE A; 5AWA A; 4Q62 A; 4KNG A; 4CNC A; 4LSX A; 2P1P B; 4IM6 A; 4Z79 A; 5AWC A; 4M7E C; 3WPE A; 4LXR A; 5FTT B; 5GS2 B; 5IYX C; 1KOO A; 1FO1 A; 3WPH A; 1XWD C; 3W3G A; 4Z8G A; 1A9N A; 1A4Y A; 3CIY A; 4WYK A; 4V2E A; 2ID5 A; 1OTN A; 2OMX A; 1OOK G; 1LTX A; 4BV4 R; 3ZYJ A; 1PGV A; 3WPD A; 2ELL A; 3RFE A; 3JB9 j; 4R6G A; 4R09 A; 4MN8 B; 3ZYO A; 3CVR A; 3RW6 A; 1FQV A; 2OMV A; 5B0N A; 2A0Z A; 3OJA B; 4CC4 C; 2P1O B; 3KJ4 A; 4J0M A; 4UFR A; 4KT1 A; 5IJC A; 3RGX A; 2Z63 A; 3E2J A; 4BSR A; 4TZH A; 3ZYI A; 2O6Q A; 1P8V A; 3E6J A; 1U0N D; 4BSU A; 1DS9 A; 4FCG A; 3E4G A; 5GMF A; 1DCE A; 4BSS A; 4AY9 X; 4PEQ B; 3G3A A; 4L3F A; 1JL5 A; 3VQ2 A; 4ARR A; 3ZYN A; 5GMG A; 4AW4 A; 4OQT A; 1H6U A; 3CIG A; 2Q4G W; 4QC0 A; 1ZIW A; 2P1Q B; 2V9S A; 3WPF A; 1Z7X W; 3WPI A; 3ULV A; 3RGZ A; 4R6J A; 2V9T B; 3W3J A; 4ARN A; 4LI2 A; 4R5C A; 1XEC A; 5LFN A; 3G3B A; 4B8C D; 2V70 A; 3TSR E; 3WPB A; 1OZN A; 3OJA A; 4QBZ A; 3OGL B; 2BEX A; 2UZX A; 3GOZ A; 2AST B; 2UZY A; 1YRG A; 1M10 B; 2RR6 A; 1GWB A; 2R9U A; 4LXS A; 1OTO A; 5HDH A; 4M7E A; 4G8A A; 4K17 A; 2WQW A; 4PSJ A; 2CA6 A; 3OGM B; 3ULA A; 4C2B B; 4Q3I A; 4ECN A; 1P9A G; 3UL8 A; 4C2A B; 4XSQ A; 4MQW X; 4PER A; 5B0T A; 5GQR K; 5AWB A; 3M19 A; 3ULU A; 2Z66 A; 1K5G C; 4Y61 B; 1OGQ A; 1XKU A; 3M18 A; 2Z82 A; 4FHO A; 2XOT A; 3RJ0 A; 4LI1 A; 4RCA B; 4CNM A; 4NKG A; 3WPC A; 3W3K A; 4LSX C; 3O6N A; 1SQ0 B; 4R08 A; 4XGO A; 1OTM A; 3WN4 A; 5IJD A; 3W3N A; 1O6S A; 4FS7 A; 4PQ8 A; 3RIZ A; 3UL7 A; 1G9U A; 4NKH A; 4WP6 A; 1P8T A; 4GLP A; 3UN9 A; 3E3Z A; 3G06 A; 3C6N B; 3PMH G; 3C6O B; #chains in the Genus database with same CATH topology 2OMU A; 5CMN A; 4CP6 A; 4YEB B; 4LSC A; 4R0A A; 2Y5Q A; 4CC4 A; 3W3L A; 3G04 C; 4FD0 A; 5IJB A; 2WQX A; 1H6T A; 1XCD A; 1W8A A; 4ECO A; 5D3I A; 5GS0 A; 2JE1 A; 5AWD A; 3C6P B; 4KXF B; 2Z7X A; 3FXI A; 3RW7 A; 1O6T A; 4Z94 G; 4R58 A; 1D0B A; 2JQD A; 2OMW A; 2WQU A; 2FT3 A; 4LSA A; 4Z64 C; 2XWT C; 4H09 A; 2RA8 A; 4CIL A; 4GT6 A; 4V2C A; 1WWL A; 1FS2 A; 4EZG A; 4R6A A; 3VQ1 A; 3BZ5 A; 2WFH A; 1QYY A; 5B4P A; 4R5D A; 3UL9 A; 2Z7X B; 4P91 A; 2ASS B; 2OMZ A; 4I6J B; 2O6R A; 5AZ5 A; 4J4L A; 4U7L A; 4U06 A; 4FMZ A; 4U08 A; 2Z62 A; 2WQV A; 1KOH A; 5GMH A; 3RFS A; 1M9L A; 3SB4 A; 2IFG A; 1FT8 A; 1XEU A; 4XOS A; 2JE0 A; 2BNH A; 1O6V A; 4Q3G A; 2P1M B; 4RWT C; 1IO0 A; 3DZE A; 1M9S A; 3W3M A; 3O53 A; 2O6S A; 4HQ1 A; 4PKI G; 3RFJ A; 4V2D A; 2P1N B; 4R07 A; 3OGK B; 3P72 A; 1K5D C; 4R6F A; 1M0Z A; 2OMT A; 4RCW A; 4P8S A; 2Z64 A; 2Z65 A; 4FDW A; 3A79 B; 4L3A A; 5A5C A; 3WPG A; 5HZL B; 4Z61 C; 4U09 A; 2OMY A; 3REZ A; 3G39 A; 2Z81 A; 5CMP A; 1DFJ I; 4QXE A; 5AWA A; 4Q62 A; 4KNG A; 4CNC A; 4NZT M; 4LSX A; 2P1P B; 4IM6 A; 4Z79 A; 5AWC A; 4M7E C; 3WPE A; 4LXR A; 5FTT B; 5GS2 B; 5IYX C; 1KOO A; 1FO1 A; 3WPH A; 1XWD C; 3W3G A; 4Z8G A; 1A9N A; 1A4Y A; 3CIY A; 4WYK A; 4V2E A; 2ID5 A; 1OTN A; 2OMX A; 1OOK G; 1LTX A; 4BV4 R; 3ZYJ A; 1PGV A; 3WPD A; 2ELL A; 3RFE A; 3JB9 j; 4R6G A; 4R09 A; 4MN8 B; 3ZYO A; 3CVR A; 3RW6 A; 1FQV A; 2OMV A; 5B0N A; 2A0Z A; 3OJA B; 4CC4 C; 2P1O B; 3KJ4 A; 4J0M A; 4UFR A; 4KT1 A; 5IJC A; 3RGX A; 2Z63 A; 3E2J A; 4BSR A; 4TZH A; 3ZYI A; 2O6Q A; 1P8V A; 3E6J A; 1U0N D; 4BSU A; 1DS9 A; 4FCG A; 3E4G A; 5GMF A; 1DCE A; 4BSS A; 4AY9 X; 4PEQ B; 3G3A A; 4L3F A; 1JL5 A; 3VQ2 A; 4ARR A; 3ZYN A; 5GMG A; 4AW4 A; 4OQT A; 1H6U A; 3CIG A; 2Q4G W; 4QC0 A; 1ZIW A; 2P1Q B; 2V9S A; 3WPF A; 1Z7X W; 3WPI A; 3ULV A; 3RGZ A; 4R6J A; 2V9T B; 3W3J A; 4ARN A; 4LI2 A; 4R5C A; 1XEC A; 5LFN A; 3G3B A; 4B8C D; 2V70 A; 3TSR E; 3WPB A; 1OZN A; 3OJA A; 4QBZ A; 3OGL B; 2BEX A; 2UZX A; 3GOZ A; 2AST B; 2UZY A; 1YRG A; 1M10 B; 2RR6 A; 1GWB A; 2R9U A; 4LXS A; 1OTO A; 5HDH A; 4M7E A; 4G8A A; 4K17 A; 2WQW A; 4PSJ A; 2CA6 A; 3OGM B; 3ULA A; 4C2B B; 4Q3I A; 4ECN A; 1P9A G; 3UL8 A; 4C2A B; 4XSQ A; 4NZR M; 4MQW X; 4PER A; 5B0T A; 5GQR K; 5AWB A; 3M19 A; 3ULU A; 2Z66 A; 1K5G C; 4Y61 B; 1OGQ A; 1XKU A; 3M18 A; 2Z82 A; 4FHO A; 2XOT A; 3RJ0 A; 4LI1 A; 4RCA B; 4CNM A; 4NKG A; 3WPC A; 3W3K A; 4LSX C; 3O6N A; 1SQ0 B; 4R08 A; 4XGO A; 1OTM A; 3WN4 A; 5IJD A; 3W3N A; 1O6S A; 4FS7 A; 4PQ8 A; 3RIZ A; 3UL7 A; 1G9U A; 4NKH A; 4WP6 A; 1P8T A; 4GLP A; 3UN9 A; 3E3Z A; 3G06 A; 3C6N B; 3PMH G; 3C6O B; #chains in the Genus database with same CATH homology 2OMU A; 5CMN A; 4CP6 A; 4YEB B; 4LSC A; 4R0A A; 2Y5Q A; 4CC4 A; 3W3L A; 3G04 C; 4FD0 A; 5IJB A; 2WQX A; 1H6T A; 1XCD A; 1W8A A; 4ECO A; 5D3I A; 5GS0 A; 2JE1 A; 5AWD A; 3C6P B; 4KXF B; 2Z7X A; 3FXI A; 3RW7 A; 1O6T A; 4Z94 G; 4R58 A; 1D0B A; 2JQD A; 2OMW A; 2WQU A; 2FT3 A; 4LSA A; 4Z64 C; 2XWT C; 4H09 A; 2RA8 A; 4CIL A; 4GT6 A; 4V2C A; 1WWL A; 1FS2 A; 4EZG A; 4R6A A; 3VQ1 A; 3BZ5 A; 2WFH A; 1QYY A; 5B4P A; 4R5D A; 3UL9 A; 2Z7X B; 4P91 A; 2ASS B; 2OMZ A; 4I6J B; 2O6R A; 5AZ5 A; 4J4L A; 4U7L A; 4U06 A; 4FMZ A; 4U08 A; 2Z62 A; 2WQV A; 1KOH A; 5GMH A; 3RFS A; 1M9L A; 3SB4 A; 2IFG A; 1FT8 A; 1XEU A; 4XOS A; 2JE0 A; 2BNH A; 1O6V A; 4Q3G A; 2P1M B; 4RWT C; 1IO0 A; 3DZE A; 1M9S A; 3W3M A; 3O53 A; 2O6S A; 4HQ1 A; 4PKI G; 3RFJ A; 4V2D A; 2P1N B; 4R07 A; 3OGK B; 3P72 A; 1K5D C; 4R6F A; 1M0Z A; 2OMT A; 4RCW A; 4P8S A; 2Z64 A; 2Z65 A; 4FDW A; 3A79 B; 4L3A A; 5A5C A; 3WPG A; 5HZL B; 4Z61 C; 4U09 A; 2OMY A; 3REZ A; 3G39 A; 2Z81 A; 5CMP A; 1DFJ I; 4QXE A; 5AWA A; 4Q62 A; 4KNG A; 4CNC A; 4LSX A; 2P1P B; 4IM6 A; 4Z79 A; 5AWC A; 4M7E C; 3WPE A; 4LXR A; 5FTT B; 5GS2 B; 5IYX C; 1KOO A; 1FO1 A; 3WPH A; 1XWD C; 3W3G A; 4Z8G A; 1A9N A; 1A4Y A; 3CIY A; 4WYK A; 4V2E A; 2ID5 A; 1OTN A; 2OMX A; 1OOK G; 1LTX A; 4BV4 R; 3ZYJ A; 1PGV A; 3WPD A; 2ELL A; 3RFE A; 3JB9 j; 4R6G A; 4R09 A; 4MN8 B; 3ZYO A; 3CVR A; 3RW6 A; 1FQV A; 2OMV A; 5B0N A; 2A0Z A; 3OJA B; 4CC4 C; 2P1O B; 3KJ4 A; 4J0M A; 4UFR A; 4KT1 A; 5IJC A; 3RGX A; 2Z63 A; 3E2J A; 4BSR A; 4TZH A; 3ZYI A; 2O6Q A; 1P8V A; 3E6J A; 1U0N D; 4BSU A; 1DS9 A; 4FCG A; 3E4G A; 5GMF A; 1DCE A; 4BSS A; 4AY9 X; 4PEQ B; 3G3A A; 4L3F A; 1JL5 A; 3VQ2 A; 4ARR A; 3ZYN A; 5GMG A; 4AW4 A; 4OQT A; 1H6U A; 3CIG A; 2Q4G W; 4QC0 A; 1ZIW A; 2P1Q B; 2V9S A; 3WPF A; 1Z7X W; 3WPI A; 3ULV A; 3RGZ A; 4R6J A; 2V9T B; 3W3J A; 4ARN A; 4LI2 A; 4R5C A; 1XEC A; 5LFN A; 3G3B A; 4B8C D; 2V70 A; 3TSR E; 3WPB A; 1OZN A; 3OJA A; 4QBZ A; 3OGL B; 2BEX A; 2UZX A; 3GOZ A; 2AST B; 2UZY A; 1YRG A; 1M10 B; 2RR6 A; 1GWB A; 2R9U A; 4LXS A; 1OTO A; 5HDH A; 4M7E A; 4G8A A; 4K17 A; 2WQW A; 4PSJ A; 2CA6 A; 3OGM B; 3ULA A; 4C2B B; 4Q3I A; 4ECN A; 1P9A G; 3UL8 A; 4C2A B; 4XSQ A; 4MQW X; 4PER A; 5B0T A; 5GQR K; 5AWB A; 3M19 A; 3ULU A; 2Z66 A; 1K5G C; 4Y61 B; 1OGQ A; 1XKU A; 3M18 A; 2Z82 A; 4FHO A; 2XOT A; 3RJ0 A; 4LI1 A; 4RCA B; 4CNM A; 4NKG A; 3WPC A; 3W3K A; 4LSX C; 3O6N A; 1SQ0 B; 4R08 A; 4XGO A; 1OTM A; 3WN4 A; 5IJD A; 3W3N A; 1O6S A; 4FS7 A; 4PQ8 A; 3RIZ A; 3UL7 A; 1G9U A; 4NKH A; 4WP6 A; 1P8T A; 4GLP A; 3UN9 A; 3E3Z A; 3G06 A; 3C6N B; 3PMH G; 3C6O B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
