2LRAA

Nmr structure of signal sequence deleted (ssd) rv0603 protein from mycobacterium tuberculosis without n-terminal his-tag
Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
81
structure length
81
Chain Sequence
GAMAFDGEDEVTGPDADRARAAAVQAVPGGTAGEVETETGEGAAAYGVLVTRPDGTRVEVHLDRDFRVLDTEPADGDGGLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (3-5)TI1 (8-11)AH1 (14-25)EMPTYTII1 (27-30)S1 (31-32)S3 (46-52)TVIII2 (42-45)S4 (56-62)TI2 (52-55)TI3 (63-66)S5 (68-73)Updating...
connected with : NaN
molecule tags Immune system
source organism Mycobacterium tuberculosis
publication title NMR Structure of Signal Sequence Deleted (SSD) Rv0603 Protein from Mycobacterium tuberculosis without N-terminal His-tag
rcsb
molecule keywords POSSIBLE EXPORTED PROTEIN
total genus 6
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2012-03-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.505.20 Alpha Beta 2-Layer Sandwich SHC Adaptor Protein SHC Adaptor Protein 2lraA00
2LRAA 2KGYA
chains in the Genus database with same CATH superfamily
1X6CA 3N7YA 1UURA 3BKBA 2EKXA 2EYYA 1FU5A 5DF6A 3M7FA 1BLKA 1X27A 3BUMB 4LUEA 2C9WA 1XA6A 1JYRA 1SPRA 4F59A 1SHBA 1LUMA 1O44A 3S8OA 2KNOA 1O42A 1LCKA 4JE4A 2K79B 3LYVA 3BUWB 3N8MA 2LQNA 2FO0A 3HHMB 2OQ1A 2YSXA 3PSKA 2L3TA 2C0TA 1GRIA 4DGPA 1LKLA 3MAZA 5DC0B 3VS2A 2L4KA 2XP1A 3EAZA 4F5BA 1JYUA 4GPLB 3VRZA 3K2MA 2H8HA 1LUIA 2LRAA 1WQUA 4NWGA 2YU7A 1BKMA 2MQIA 4A4BA 4H1OA 1O4DA 1X0NA 5DC4A 3VS1A 5J3XA 1AYDA 1PICA 3QWYA 3BUXB 4OHLA 1OO3A 4OHDA 4EIHA 1O4AA 1RQQC 1AB2A 1D4TA 1NZLA 5EHPA 5IBMA 3GXXA 1AYBA 1BLJA 4OHIA 3S9KA 3IMDA 2DCRA 1MILA 2PLEA 2EO3A 2GSBA 5I6VA 2OZOA 1O4PA 3UYOA 4ROJA 2JYQA 1O41A 3IMJA 3GQIB 5CDWA 4GL9E 1IS0A 1Y1UA 1A1BA 2EYZA 3T04A 3PJPA 4JEGA 1BG1A 1A1EA 1TCEA 4OHHA 2GE9A 3CBLA 1O4KA 3NHNA 1M27A 2H46E 2EOBA 1HCTB 1LUNA 1O4BA 1BM2A 2CS0A 1O46A 4LUDA 4FBNA 3OVEA 3UF4A 3N84A 1A09A 2EL8A 1FBVA 3HCKA 2CIAA 2MRKA 3PFVA 3BUNB 5HKYA 3QWXX 1P13A 1KA6A 2C0IA 3PS5A 4D8KA 4A4CA 1O45A 4P9VA 1IJRA 2DM0A 2CI8A 1O4CA 5EELA 5IBSA 3VS4A 1CSYA 1A08A 3VS7A 2IUGA 2IUHA 1HCSB 2AUGA 3VRNA 2B3OA 1SHAA 1A1CA 5AULA 1F1WA 3TL0A 1A07A 4OHEA 2DLYA 5EHRA 4FL3A 3OV1A 3OB1B 4TZIA 3MXYA 2DVJA 1O4JA 1GHUA 1LUKA 2Y1MA 5EG3B 3WA4A 1BMBA 1YVHA 3VS0A 2QMSA 2PNAA 2IUIA 3S8LA 2MK2A 1NZVA 3GXWA 1D4WA 4U1PA 1OO4A 1BHHB 1D1ZA 1O49A 1R1SA 2C0OA 1O4HA 2CR4A 1AYAA 2LNWA 3IN8A 2PTKA 1O4NA 3VRQA 3PSJA 2HDXA 2ABLA 4F5AA 4FL2A 4H34A 1O48A 2DX0A 3HIZB 3S8NA 1O4GA 1LCJA 2EO6A 5EEQA 1QCFA 4E68A 1H9OA 3OP0A 4K2RA 2H5KA 2HDVA 1K9AA 5KAZA 3VRPA 1O43A 1O4EA 3US4A 1O47A 1F2FA 1BKLA 2LQWA 1Z3KA 2CRHA 1FYRA 1MW4A 1O4LA 2RMXA 1UUSA 1O4QA 2RORA 4K45A 2BBUA 2CI9A 3MXCA 4NWFA 3BUOB 1BHFA 3VRYA 1AD5A 2MC1A 1OPKA 4WWQA 2AOBA 1AOTF 2HMHA 2EU0A 3VS6A 4E93A 4X6SA 1CWEA 4P9ZA 2RVFA 2EYVA 1JYQA 1CJ1A 1I3ZA 5HKZA 2DLZA 2RSYA 3VGOA 1BFJA 1RJAA 1M61A 4U17A 2Y1NA 1BFIA 2PLDA 1O4IA 1AOUF 4EY0A 5GJIA 1R1QA 5DC9A 2HUWA 1O4MA 1Y57A 1QG1E 4JGHA 2KGYA 3TKZA 3KFJA 1FU6A 1ZFPE 2FCIA 1B47A 5AXIA 1O4RA 1BF5A 1A81A 1CSZA 2HCKA 4DGXA 2LNXA 3VS5A 4K44A 5D0JA 2SRCA 2Y3AB 4M4ZA 3PQZA 2ETZA 1SPSA 1BHHA 3K2TA 5GJHA 2L6KA 1SHDA 1JWOA 1FMKA 1AYCA 2K7AB 4GWFA 1QADA 5BO4A 1R1PA 2KK6A 1FBZA 3VRRA 5HKWA 1LKKA 1O4OA 1KSWA 1NRVA 2CBLA 3OB2B 4L1BB 3VROA 1YVLA 1SKJA 4QSYA 2MRJA 3ZNIA 2PNBA 2AOAA 1OPLA 1CWDL 3EACA 3CWGA 1JU5A 2VIFA 4K11A 2SHPA 2ECDA 1A1AA 4XZ1A 1O4FA 1TZEE 3CXLA 1FHSA 1KA7A 4XZ0A 1G83A 1KC2A 3PLFB 3CD3A 3IN7A 2LCTA 2IZVA 3VS3A 1RPYA 3C7IA
chains in the Genus database with same CATH topology
2LRAA 3LYVA 2CI8A 3K2TA 2KGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LRA A;  2KGY A; 
#chains in the Genus database with same CATH topology
 1X6C A;  3N7Y A;  1UUR A;  3BKB A;  2EKX A;  2EYY A;  1FU5 A;  5DF6 A;  3M7F A;  1BLK A;  1X27 A;  3BUM B;  4LUE A;  2C9W A;  1XA6 A;  1JYR A;  1SPR A;  4F59 A;  1SHB A;  1LUM A;  1O44 A;  3S8O A;  2KNO A;  1O42 A;  1LCK A;  4JE4 A;  2K79 B;  3LYV A;  3BUW B;  3N8M A;  2LQN A;  2FO0 A;  3HHM B;  2OQ1 A;  2YSX A;  3PSK A;  2L3T A;  2C0T A;  1GRI A;  4DGP A;  1LKL A;  3MAZ A;  5DC0 B;  3VS2 A;  2L4K A;  2XP1 A;  3EAZ A;  4F5B A;  1JYU A;  4GPL B;  3VRZ A;  3K2M A;  2H8H A;  1LUI A;  2LRA A;  1WQU A;  4NWG A;  2YU7 A;  1BKM A;  2MQI A;  4A4B A;  4H1O A;  1O4D A;  1X0N A;  5DC4 A;  3VS1 A;  5J3X A;  1AYD A;  1PIC A;  3QWY A;  3BUX B;  4OHL A;  1OO3 A;  4OHD A;  4EIH A;  1O4A A;  1RQQ C;  1AB2 A;  1D4T A;  1NZL A;  5EHP A;  5IBM A;  3GXX A;  1AYB A;  1BLJ A;  4OHI A;  3S9K A;  3IMD A;  2DCR A;  1MIL A;  2PLE A;  2EO3 A;  2GSB A;  5I6V A;  2OZO A;  1O4P A;  3UYO A;  4ROJ A;  2JYQ A;  1O41 A;  3IMJ A;  3GQI B;  5CDW A;  4GL9 E;  1IS0 A;  1Y1U A;  1A1B A;  2EYZ A;  3T04 A;  3PJP A;  4JEG A;  1BG1 A;  1A1E A;  1TCE A;  4OHH A;  2GE9 A;  3CBL A;  1O4K A;  3NHN A;  1M27 A;  2H46 E;  2EOB A;  1HCT B;  1LUN A;  1O4B A;  1BM2 A;  2CS0 A;  1O46 A;  4LUD A;  4FBN A;  3OVE A;  3UF4 A;  3N84 A;  1A09 A;  2EL8 A;  1FBV A;  3HCK A;  2CIA A;  2MRK A;  3PFV A;  3BUN B;  5HKY A;  3QWX X;  1P13 A;  1KA6 A;  2C0I A;  3PS5 A;  4D8K A;  4A4C A;  1O45 A;  4P9V A;  1IJR A;  2DM0 A;  2CI8 A;  1O4C A;  5EEL A;  5IBS A;  3VS4 A;  1CSY A;  1A08 A;  3VS7 A;  2IUG A;  2IUH A;  1HCS B;  2AUG A;  3VRN A;  2B3O A;  1SHA A;  1A1C A;  5AUL A;  1F1W A;  3TL0 A;  1A07 A;  4OHE A;  2DLY A;  5EHR A;  4FL3 A;  3OV1 A;  3OB1 B;  4TZI A;  3MXY A;  2DVJ A;  1O4J A;  1GHU A;  1LUK A;  2Y1M A;  5EG3 B;  3WA4 A;  1BMB A;  1YVH A;  3VS0 A;  2QMS A;  2PNA A;  2IUI A;  3S8L A;  2MK2 A;  1NZV A;  3GXW A;  1D4W A;  4U1P A;  1OO4 A;  1BHH B;  1D1Z A;  1O49 A;  1R1S A;  2C0O A;  1O4H A;  2CR4 A;  1AYA A;  2LNW A;  3IN8 A;  2PTK A;  1O4N A;  3VRQ A;  3PSJ A;  2HDX A;  2ABL A;  4F5A A;  4FL2 A;  4H34 A;  1O48 A;  2DX0 A;  3HIZ B;  3S8N A;  1O4G A;  1LCJ A;  2EO6 A;  5EEQ A;  1QCF A;  4E68 A;  1H9O A;  3OP0 A;  4K2R A;  2H5K A;  2HDV A;  1K9A A;  5KAZ A;  3VRP A;  1O43 A;  1O4E A;  3US4 A;  1O47 A;  1F2F A;  1BKL A;  2LQW A;  1Z3K A;  2CRH A;  1FYR A;  1MW4 A;  1O4L A;  2RMX A;  1UUS A;  1O4Q A;  2ROR A;  4K45 A;  2BBU A;  2CI9 A;  3MXC A;  4NWF A;  3BUO B;  1BHF A;  3VRY A;  1AD5 A;  2MC1 A;  1OPK A;  4WWQ A;  2AOB A;  1AOT F;  2HMH A;  2EU0 A;  3VS6 A;  4E93 A;  4X6S A;  1CWE A;  4P9Z A;  2RVF A;  2EYV A;  1JYQ A;  1CJ1 A;  1I3Z A;  5HKZ A;  2DLZ A;  2RSY A;  3VGO A;  1BFJ A;  1RJA A;  1M61 A;  4U17 A;  2Y1N A;  1BFI A;  2PLD A;  1O4I A;  1AOU F;  4EY0 A;  5GJI A;  1R1Q A;  5DC9 A;  2HUW A;  1O4M A;  1Y57 A;  1QG1 E;  4JGH A;  2KGY A;  3TKZ A;  3KFJ A;  1FU6 A;  1ZFP E;  2FCI A;  1B47 A;  5AXI A;  1O4R A;  1BF5 A;  1A81 A;  1CSZ A;  2HCK A;  4DGX A;  2LNX A;  3VS5 A;  4K44 A;  5D0J A;  2SRC A;  2Y3A B;  4M4Z A;  3PQZ A;  2ETZ A;  1SPS A;  1BHH A;  3K2T A;  5GJH A;  2L6K A;  1SHD A;  1JWO A;  1FMK A;  1AYC A;  2K7A B;  4GWF A;  1QAD A;  5BO4 A;  1R1P A;  2KK6 A;  1FBZ A;  3VRR A;  5HKW A;  1LKK A;  1O4O A;  1KSW A;  1NRV A;  2CBL A;  3OB2 B;  4L1B B;  3VRO A;  1YVL A;  1SKJ A;  4QSY A;  2MRJ A;  3ZNI A;  2PNB A;  2AOA A;  1OPL A;  1CWD L;  3EAC A;  3CWG A;  1JU5 A;  2VIF A;  4K11 A;  2SHP A;  2ECD A;  1A1A A;  4XZ1 A;  1O4F A;  1TZE E;  3CXL A;  1FHS A;  1KA7 A;  4XZ0 A;  1G83 A;  1KC2 A;  3PLF B;  3CD3 A;  3IN7 A;  2LCT A;  2IZV A;  3VS3 A;  1RPY A;  3C7I A; 
#chains in the Genus database with same CATH homology
 2LRA A;  3LYV A;  2CI8 A;  3K2T A;  2KGY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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