3GR5 | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	153
structure length	153
Chain Sequence	MSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 153 atoms

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153 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Escherichia coli
publication title	A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. pubmed doi rcsb
molecule keywords	EscC
total genus	39
structure length	153
sequence length	153
ec nomenclature
pdb deposition date	2009-03-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	3gr5A02
3.55.50.30	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Phage tail protein beta-alpha-beta fold	3gr5A01

2W16A 2Y3MA 4M0NA 2W6UA 2W75A 4AR0A 2A02A 2W77A 2W78A 3GR5A 2W76A 2M5JA 4E9JA 2D1UA 3OSSD 2O5PA 2IAHA 3EZJA 4M0HA 4JTMA 4G08A 4EC5A 1ZZVA 2W6TA
chains in the Genus database with same CATH superfamily

3D37A 2UXCH 1WTJA 2W16A 4OD6A 1WVNA 4UHVA 3T1HH 1ZZIA 4X65H 4DV2H 4AQYH 2HH3A 1S03G 5IWAH 3VKEA 2ZM6H 3OTOH 2NN6G 2W6UA 1WTHD 2M6QA 4DR3H 4DR4H 1ZTGA 1DTJA 1VBIA 4H8AA 4GKKH 3GR5A 1X9ZA 2CWFA 4JI1H 2W78A 1X0AA 4OCHA 2JVZA 5A2QW 2Z6BD 4QMFB 1N34H 4FJSA 4JI7H 2D1UA 4KHPH 3GS9A 2UUAH 2YQRA 3KDGA 4AM3A 4NXNH 2CPMA 4JI2H 4B8TA 4DV0H 3KDKA 2ANNA 2CTKA 2VQEH 4LFAH 4LF5H 1X4NA 1X4MA 4JI8H 5IT9W 4JTMA 1S20A 1HR0H 1VIHA 3J80W 4X62H 4JI4H 2CTEA 4B3TH 4X64H 1ODHA 3AEVB 1IBMH 2BA0A 2ZQEA 1WRUA 5LL6b 1WE8A 2A1SA 4MTKA 2CWHA 4NBQA 2UXDH 2E3UA 2CTMA 4DV4H 4OX9H 4DR6H 4AR0A 2QNDA 1N36H 1PQXA 3U1KA 2A02A 1HNZH 4WALA 4YY3H 2LTLA 2VKCA 4DV1H 5BR8H 2M5JA 3QD7X 3CDDA 5K36G 2O5PA 4BA1I 2IAHA 3GKUA 4JYAH 3FAUA 4PDBA 1UG8A 1IBKH 1KHMA 5DT9A 2PQUA 4DUZH 5JEAG 2BL5A 4LF6H 2UXBH 4JI5H 2D9IA 4JVYA 1N32H 1XRHA 2UU9H 2FMRA 4LF4H 2DGRA 2X06A 2UUBH 2HH2A 2PY9A 1ZZKA 1HNWH 4B3MH 3ADYA 1Z2IA 2CPQA 1J5KA 4NXMH 3V69A 2CTFA 1XMQH 1AN7A 4DUYH 3SB1A 1HNXH 4B3RH 1VIGA 2CTJA 2LRRA 2OPUA 4JI6H 3GABA 4OO1G 4DV7H 2JZXA 2L4WA 2P5ZX 2O4CA 2E5LH 3UOEA 1XMOH 2ANRA 3RF2A 4NZRM 2G8YA 4NZTM 4AIMA 1FJGH 3L7ZC 1I6UA 2X531 2W76A 4DV3H 2UUCH 5LMNH 4LF9H 4BA2I 1I94H 4WANA 1V8CA 4DV5H 3OSSD 1N33H 2M8WA 3I0PA 4DR5H 2PT7G 2WZPR 4K0KH 4JV5H 4X66H 4JVHA 2AXYA 4M0HA 2LTMA 1MSZA 2JE6I 4B3SH 1XNRH 2F4VH 4IFDG 4LIJA 4B8CD 1DT4A 1J5EH 4G08A 2MJHA 1V9NA 4GKJH 3JAMW 2W6TA 1XNQH 4LFBH 3NCVA 3J81W 4LF8H 4DR7H 3OV5A 2Y3MA 5C0XG 1ZZJA 2FFMA 3J7AK 4M0NA 2OPVA 4FJUA 4DV6H 1F0XA 2K1HA 1K1GA 5LMUH 1IBLH 3T1YH 4LFCH 2W77A 1WHRA 1EC6A 2CTLA 1K28D 2VQFH 1J4WA 2HHHH 4E9JA 4LF7H 4DR1H 1SEIA 2LF0A 1TUAA 3OETA 3EZJA 4YHHH 1FKAH 2W75A 1NXUA 2P2RA 2FPHX 5FLXW 2Z0SA 4JI0H 4JI3H 2JEAI 4EC5A 1ZZVA 2JA9A 4DR2H 2JEBI
chains in the Genus database with same CATH topology

2W16A 2UXCH 4OD6A 3T1HH 4X65H 4DV2H 4AQYH 1S03G 5IWAH 2W6UA 2ZM6H 3OTOH 1WTHD 4DR3H 4DR4H 4GKKH 2W78A 3GR5A 1X9ZA 4JI1H 4OCHA 5A2QW 2Z6BD 1N34H 4JI7H 2D1UA 4KHPH 3GS9A 2UUAH 3KDGA 4NXNH 4JI2H 4DV0H 3KDKA 4LFAH 2VQEH 4LF5H 4JI8H 4JTMA 5IT9W 1HR0H 3J80W 4X62H 4JI4H 4B3TH 4X64H 1ODHA 1IBMH 2ZQEA 5LL6b 2UXDH 4DV4H 4OX9H 4DR6H 4AR0A 1N36H 2A02A 1HNZH 4YY3H 4DV1H 2VKCA 5BR8H 2M5JA 3QD7X 2O5PA 2IAHA 4JYAH 3FAUA 4PDBA 1IBKH 5DT9A 4DUZH 4LF6H 2UXBH 4JI5H 2D9IA 2UU9H 4LF4H 2UUBH 1HNWH 4B3MH 3ADYA 4NXMH 1XMQH 1AN7A 4DUYH 3SB1A 1HNXH 4B3RH 1N32H 4JI6H 2W75A 2L4WA 3GABA 4DV7H 2O4CA 2E5LH 1XMOH 3RF2A 4NZRM 4NZTM 1FJGH 1I6UA 2X531 2W76A 4DV3H 2UUCH 5LMNH 4LF9H 1I94H 4DV5H 3OSSD 1N33H 2WZPR 4DR5H 2PT7G 4K0KH 4JV5H 4X66H 4M0HA 4B3SH 2F4VH 1XNRH 4B8CD 1J5EH 4G08A 4GKJH 3JAMW 2W6TA 1XNQH 4LFBH 3NCVA 3J81W 4LF8H 4DR7H 3OV5A 2Y3MA 3J7AK 4M0NA 4DV6H 1F0XA 1IBLH 5LMUH 3T1YH 4LFCH 2W77A 1K28D 2VQFH 2HHHH 4E9JA 4LF7H 4DR1H 1SEIA 2LF0A 3OETA 3EZJA 4YHHH 1FKAH 2FPHX 5FLXW 4JI0H 4JI3H 4EC5A 1ZZVA 4DR2H
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2W16 A;  2Y3M A;  4M0N A;  2W6U A;  2W75 A;  4AR0 A;  2A02 A;  2W77 A;  2W78 A;  3GR5 A;  2W76 A;  2M5J A;  4E9J A;  2D1U A;  3OSS D;  2O5P A;  2IAH A;  3EZJ A;  4M0H A;  4JTM A;  4G08 A;  4EC5 A;  1ZZV A;  2W6T A; 
#chains in the Genus database with same CATH topology
 3D37 A;  2UXC H;  1WTJ A;  2W16 A;  4OD6 A;  1WVN A;  4UHV A;  3T1H H;  1ZZI A;  4X65 H;  4DV2 H;  4AQY H;  2HH3 A;  1S03 G;  5IWA H;  3VKE A;  2ZM6 H;  3OTO H;  2NN6 G;  2W6U A;  1WTH D;  2M6Q A;  4DR3 H;  4DR4 H;  1ZTG A;  1DTJ A;  1VBI A;  4H8A A;  4GKK H;  3GR5 A;  1X9Z A;  2CWF A;  4JI1 H;  2W78 A;  1X0A A;  4OCH A;  2JVZ A;  5A2Q W;  2Z6B D;  4QMF B;  1N34 H;  4FJS A;  4JI7 H;  2D1U A;  4KHP H;  3GS9 A;  2UUA H;  2YQR A;  3KDG A;  4AM3 A;  4NXN H;  2CPM A;  4JI2 H;  4B8T A;  4DV0 H;  3KDK A;  2ANN A;  2CTK A;  2VQE H;  4LFA H;  4LF5 H;  1X4N A;  1X4M A;  4JI8 H;  5IT9 W;  4JTM A;  1S20 A;  1HR0 H;  1VIH A;  3J80 W;  4X62 H;  4JI4 H;  2CTE A;  4B3T H;  4X64 H;  1ODH A;  3AEV B;  1IBM H;  2BA0 A;  2ZQE A;  1WRU A;  5LL6 b;  1WE8 A;  2A1S A;  4MTK A;  2CWH A;  4NBQ A;  2UXD H;  2E3U A;  2CTM A;  4DV4 H;  4OX9 H;  4DR6 H;  4AR0 A;  2QND A;  1N36 H;  1PQX A;  3U1K A;  2A02 A;  1HNZ H;  4WAL A;  4YY3 H;  2LTL A;  2VKC A;  4DV1 H;  5BR8 H;  2M5J A;  3QD7 X;  3CDD A;  5K36 G;  2O5P A;  4BA1 I;  2IAH A;  3GKU A;  4JYA H;  3FAU A;  4PDB A;  1UG8 A;  1IBK H;  1KHM A;  5DT9 A;  2PQU A;  4DUZ H;  5JEA G;  2BL5 A;  4LF6 H;  2UXB H;  4JI5 H;  2D9I A;  4JVY A;  1N32 H;  1XRH A;  2UU9 H;  2FMR A;  4LF4 H;  2DGR A;  2X06 A;  2UUB H;  2HH2 A;  2PY9 A;  1ZZK A;  1HNW H;  4B3M H;  3ADY A;  1Z2I A;  2CPQ A;  1J5K A;  4NXM H;  3V69 A;  2CTF A;  1XMQ H;  1AN7 A;  4DUY H;  3SB1 A;  1HNX H;  4B3R H;  1VIG A;  2CTJ A;  2LRR A;  2OPU A;  4JI6 H;  3GAB A;  4OO1 G;  4DV7 H;  2JZX A;  2L4W A;  2P5Z X;  2O4C A;  2E5L H;  3UOE A;  1XMO H;  2ANR A;  3RF2 A;  4NZR M;  2G8Y A;  4NZT M;  4AIM A;  1FJG H;  3L7Z C;  1I6U A;  2X53 1;  2W76 A;  4DV3 H;  2UUC H;  5LMN H;  4LF9 H;  4BA2 I;  1I94 H;  4WAN A;  1V8C A;  4DV5 H;  3OSS D;  1N33 H;  2M8W A;  3I0P A;  4DR5 H;  2PT7 G;  2WZP R;  4K0K H;  4JV5 H;  4X66 H;  4JVH A;  2AXY A;  4M0H A;  2LTM A;  1MSZ A;  2JE6 I;  4B3S H;  1XNR H;  2F4V H;  4IFD G;  4LIJ A;  4B8C D;  1DT4 A;  1J5E H;  4G08 A;  2MJH A;  1V9N A;  4GKJ H;  3JAM W;  2W6T A;  1XNQ H;  4LFB H;  3NCV A;  3J81 W;  4LF8 H;  4DR7 H;  3OV5 A;  2Y3M A;  5C0X G;  1ZZJ A;  2FFM A;  3J7A K;  4M0N A;  2OPV A;  4FJU A;  4DV6 H;  1F0X A;  2K1H A;  1K1G A;  5LMU H;  1IBL H;  3T1Y H;  4LFC H;  2W77 A;  1WHR A;  1EC6 A;  2CTL A;  1K28 D;  2VQF H;  1J4W A;  2HHH H;  4E9J A;  4LF7 H;  4DR1 H;  1SEI A;  2LF0 A;  1TUA A;  3OET A;  3EZJ A;  4YHH H;  1FKA H;  2W75 A;  1NXU A;  2P2R A;  2FPH X;  5FLX W;  2Z0S A;  4JI0 H;  4JI3 H;  2JEA I;  4EC5 A;  1ZZV A;  2JA9 A;  4DR2 H;  2JEB I; 
#chains in the Genus database with same CATH homology
 2W16 A;  2UXC H;  4OD6 A;  3T1H H;  4X65 H;  4DV2 H;  4AQY H;  1S03 G;  5IWA H;  2W6U A;  2ZM6 H;  3OTO H;  1WTH D;  4DR3 H;  4DR4 H;  4GKK H;  2W78 A;  3GR5 A;  1X9Z A;  4JI1 H;  4OCH A;  5A2Q W;  2Z6B D;  1N34 H;  4JI7 H;  2D1U A;  4KHP H;  3GS9 A;  2UUA H;  3KDG A;  4NXN H;  4JI2 H;  4DV0 H;  3KDK A;  4LFA H;  2VQE H;  4LF5 H;  4JI8 H;  4JTM A;  5IT9 W;  1HR0 H;  3J80 W;  4X62 H;  4JI4 H;  4B3T H;  4X64 H;  1ODH A;  1IBM H;  2ZQE A;  5LL6 b;  2UXD H;  4DV4 H;  4OX9 H;  4DR6 H;  4AR0 A;  1N36 H;  2A02 A;  1HNZ H;  4YY3 H;  4DV1 H;  2VKC A;  5BR8 H;  2M5J A;  3QD7 X;  2O5P A;  2IAH A;  4JYA H;  3FAU A;  4PDB A;  1IBK H;  5DT9 A;  4DUZ H;  4LF6 H;  2UXB H;  4JI5 H;  2D9I A;  2UU9 H;  4LF4 H;  2UUB H;  1HNW H;  4B3M H;  3ADY A;  4NXM H;  1XMQ H;  1AN7 A;  4DUY H;  3SB1 A;  1HNX H;  4B3R H;  1N32 H;  4JI6 H;  2W75 A;  2L4W A;  3GAB A;  4DV7 H;  2O4C A;  2E5L H;  1XMO H;  3RF2 A;  4NZR M;  4NZT M;  1FJG H;  1I6U A;  2X53 1;  2W76 A;  4DV3 H;  2UUC H;  5LMN H;  4LF9 H;  1I94 H;  4DV5 H;  3OSS D;  1N33 H;  2WZP R;  4DR5 H;  2PT7 G;  4K0K H;  4JV5 H;  4X66 H;  4M0H A;  4B3S H;  2F4V H;  1XNR H;  4B8C D;  1J5E H;  4G08 A;  4GKJ H;  3JAM W;  2W6T A;  1XNQ H;  4LFB H;  3NCV A;  3J81 W;  4LF8 H;  4DR7 H;  3OV5 A;  2Y3M A;  3J7A K;  4M0N A;  4DV6 H;  1F0X A;  1IBL H;  5LMU H;  3T1Y H;  4LFC H;  2W77 A;  1K28 D;  2VQF H;  2HHH H;  4E9J A;  4LF7 H;  4DR1 H;  1SEI A;  2LF0 A;  3OET A;  3EZJ A;  4YHH H;  1FKA H;  2FPH X;  5FLX W;  4JI0 H;  4JI3 H;  4EC5 A;  1ZZV A;  4DR2 H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GR5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN