The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
233
|
structure length |
198
|
Chain Sequence |
ATFTANFKDTDLKSFIETVGANLNKTIIMVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTQIVADERTNSVIVSGDPATRDKMRRLIRRLD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody.
pubmed doi rcsb |
| molecule keywords |
General secretion pathway protein GspD
|
| molecule tags |
Protein transport
|
| source organism |
Escherichia coli
|
| total genus |
58
|
| structure length |
198
|
| sequence length |
233
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature | |
| pdb deposition date | 2008-10-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03958 | Secretin_N | Bacterial type II/III secretion system short domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
#chains in the Genus database with same CATH superfamily 3GR5 A; 4G08 A; 2W75 A; 3OSS D; 2A02 A; 2W6U A; 2M5J A; 1ZZV A; 2Y3M A; 4M0N A; 4M0H A; 2D1U A; 3EZJ A; 2W76 A; 2W16 A; 2W6T A; 2W78 A; 4AR0 A; 4E9J A; 2O5P A; 4EC5 A; 2IAH A; 2W77 A; 4JTM A; #chains in the Genus database with same CATH topology 2ANN A; 2D9I A; 2UUB H; 4LF6 H; 4X65 H; 4DV2 H; 3OV5 A; 1ZZK A; 2CPM A; 4JI3 H; 4LF8 H; 2Z6B D; 1F0X A; 1WVN A; 2JEA I; 4DR6 H; 4DR4 H; 1PQX A; 3VKE A; 1FKA H; 2HH2 A; 3KDG A; 2W6U A; 2LTL A; 2JVZ A; 2JEB I; 1X4M A; 2LF0 A; 4JV5 H; 2WZP R; 4M0H A; 2D1U A; 4K0K H; 2W76 A; 4LFB H; 2ZM6 H; 4DV3 H; 2UUA H; 4UHV A; 1V8C A; 4DV1 H; 1WE8 A; 3I0P A; 4JVY A; 2JE6 I; 4JI6 H; 3AEV B; 4MTK A; 3RF2 A; 4AIM A; 2JZX A; 4DV5 H; 5JEA G; 4JI5 H; 4NZT M; 4JI8 H; 2UXD H; 1VIH A; 4X64 H; 4GKJ H; 4JYA H; 2IAH A; 1UG8 A; 1DTJ A; 3UOE A; 5BR8 H; 1MSZ A; 5LMU H; 2VQF H; 4JTM A; 2BA0 A; 4DUZ H; 1X4N A; 2X06 A; 3OET A; 5IWA H; 4B3S H; 1V9N A; 4DR2 H; 2HHH H; 4JI4 H; 1VBI A; 4GKK H; 1S20 A; 4DV7 H; 1HR0 H; 3U1K A; 4X66 H; 1ZTG A; 1XNQ H; 4H8A A; 4BA1 I; 4DR7 H; 3J80 W; 5IT9 W; 1N36 H; 2M5J A; 3CDD A; 1N34 H; 1IBM H; 2L4W A; 4DV4 H; 2LTM A; 4NBQ A; 1ODH A; 1SEI A; 2W16 A; 4NXM H; 2W78 A; 4OO1 G; 4AR0 A; 1I6U A; 4B8T A; 4B3R H; 4JVH A; 2VKC A; 4DUY H; 1XMO H; 4E9J A; 2O5P A; 2NN6 G; 4QMF B; 3KDK A; 2ZQE A; 5A2Q W; 4LFC H; 4LF4 H; 1WTH D; 1XNR H; 1X0A A; 4PDB A; 4X62 H; 2W77 A; 4B3T H; 2PY9 A; 2X53 1; 1ZZI A; 2VQE H; 1J4W A; 2CTF A; 1WRU A; 4LIJ A; 4JI1 H; 2W75 A; 3GKU A; 4NZR M; 1XMQ H; 2LRR A; 2MJH A; 2UXC H; 1NXU A; 4WAN A; 3OSS D; 4FJS A; 2CTM A; 2CPQ A; 4LF5 H; 4AQY H; 5LMN H; 1ZZV A; 3OTO H; 3GS9 A; 2Y3M A; 2CTK A; 2OPV A; 4M0N A; 2UU9 H; 1DT4 A; 4B8C D; 3QD7 X; 2E3U A; 3L7Z C; 2W6T A; 1HNZ H; 4BA2 I; 4JI7 H; 1WHR A; 1KHM A; 4DR5 H; 4JI2 H; 1N32 H; 1XRH A; 2CTJ A; 1IBK H; 5LL6 b; 2AXY A; 2YQR A; 3JAM W; 2OPU A; 2CTL A; 1J5K A; 2O4C A; 3T1H H; 4JI0 H; 4KHP H; 1J5E H; 3GAB A; 1I94 H; 2G8Y A; 1X9Z A; 3D37 A; 2M6Q A; 4DR3 H; 3NCV A; 5K36 G; 4OD6 A; 3T1Y H; 1Z2I A; 2QND A; 3GR5 A; 4G08 A; 5FLX W; 4LFA H; 3ADY A; 2FFM A; 1TUA A; 2DGR A; 2A02 A; 4DR1 H; 2M8W A; 5C0X G; 1HNW H; 1HNX H; 2FPH X; 2CTE A; 4LF7 H; 2Z0S A; 4NXN H; 1AN7 A; 4YHH H; 2UUC H; 3V69 A; 3J81 W; 1S03 G; 4AM3 A; 2JA9 A; 3SB1 A; 3EZJ A; 4FJU A; 2A1S A; 2HH3 A; 2E5L H; 4DV0 H; 4B3M H; 2FMR A; 4LF9 H; 4WAL A; 2PQU A; 1WTJ A; 1EC6 A; 3J7A K; 4DV6 H; 4IFD G; 1ZZJ A; 2P2R A; 1K28 D; 1VIG A; 1K1G A; 2UXB H; 2CWF A; 4OX9 H; 2BL5 A; 4EC5 A; 4YY3 H; 2F4V H; 5DT9 A; 1FJG H; 2ANR A; 2P5Z X; 2CWH A; 2K1H A; 3FAU A; 1N33 H; 1IBL H; 4OCH A; 2PT7 G; #chains in the Genus database with same CATH homology 2D9I A; 2UUB H; 4LF6 H; 4X65 H; 4DV2 H; 3OV5 A; 4JI3 H; 4LF8 H; 2Z6B D; 1F0X A; 4DR6 H; 4DR4 H; 1FKA H; 2W6U A; 3KDG A; 2LF0 A; 4JV5 H; 2WZP R; 4M0H A; 2D1U A; 4K0K H; 2W76 A; 4LFB H; 2ZM6 H; 4DV3 H; 2UUA H; 4DV1 H; 4JI6 H; 3RF2 A; 2UXD H; 4DV5 H; 4JI5 H; 4NZT M; 4JI8 H; 4X64 H; 4GKJ H; 4JYA H; 2IAH A; 5BR8 H; 5LMU H; 2VQF H; 4JTM A; 4DUZ H; 3OET A; 5IWA H; 4B3S H; 4DR2 H; 2HHH H; 4JI4 H; 4GKK H; 4DV7 H; 1HR0 H; 4X66 H; 1XNQ H; 4DR7 H; 2M5J A; 5IT9 W; 3J80 W; 1N36 H; 1N34 H; 1IBM H; 2L4W A; 4DV4 H; 1ODH A; 1SEI A; 2W16 A; 4NXM H; 2W78 A; 4AR0 A; 1I6U A; 4B3R H; 2VKC A; 4DUY H; 1XMO H; 4E9J A; 2O5P A; 3KDK A; 2ZQE A; 5A2Q W; 4LFC H; 4LF4 H; 1WTH D; 1XNR H; 4PDB A; 4X62 H; 2W77 A; 4B3T H; 2X53 1; 2VQE H; 4JI1 H; 2W75 A; 4NZR M; 1XMQ H; 2UXC H; 3OSS D; 4LF5 H; 4AQY H; 5LMN H; 1ZZV A; 3OTO H; 3GS9 A; 2Y3M A; 4M0N A; 2UU9 H; 4B8C D; 3QD7 X; 2W6T A; 1HNZ H; 4JI7 H; 4DR5 H; 4JI2 H; 1N32 H; 1IBK H; 5LL6 b; 4JI0 H; 3JAM W; 2O4C A; 3T1H H; 4KHP H; 1J5E H; 3GAB A; 1I94 H; 1X9Z A; 4DR3 H; 3NCV A; 4OD6 A; 3T1Y H; 5FLX W; 3GR5 A; 4G08 A; 4LFA H; 3ADY A; 2A02 A; 4DR1 H; 1HNW H; 1HNX H; 2FPH X; 4NXN H; 4LF7 H; 1AN7 A; 4YHH H; 2UUC H; 3J81 W; 1S03 G; 3SB1 A; 3EZJ A; 2E5L H; 4DV0 H; 4B3M H; 4LF9 H; 3J7A K; 4DV6 H; 1K28 D; 2UXB H; 4OX9 H; 4EC5 A; 4YY3 H; 2F4V H; 5DT9 A; 1FJG H; 3FAU A; 1N33 H; 1IBL H; 4OCH A; 2PT7 G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
