The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
39
|
sequence length |
153
|
structure length |
153
|
Chain Sequence |
MSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
pubmed doi rcsb |
| molecule keywords |
EscC
|
| molecule tags |
Membrane protein
|
| source organism |
Escherichia coli
|
| total genus |
39
|
| structure length |
153
|
| sequence length |
153
|
| ec nomenclature | |
| pdb deposition date | 2009-03-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
#chains in the Genus database with same CATH superfamily 2W75 A; 3GR5 A; 2W6U A; 2W77 A; 4E9J A; 4M0N A; 2A02 A; 2M5J A; 3EZJ A; 4EC5 A; 2Y3M A; 3OSS D; 4AR0 A; 4JTM A; 2IAH A; 2W76 A; 2W16 A; 2D1U A; 4M0H A; 2W78 A; 2O5P A; 4G08 A; 1ZZV A; 2W6T A; #chains in the Genus database with same CATH topology 3RF2 A; 3KDK A; 1ZZJ A; 2W6U A; 4E9J A; 4YHH H; 2CTK A; 2O4C A; 3I0P A; 4FJS A; 3T1Y H; 2PQU A; 4YY3 H; 1I6U A; 1XNR H; 3QD7 X; 2Z0S A; 4B8C D; 2Y3M A; 3L7Z C; 4NXN H; 2ANN A; 4DR7 H; 2NN6 G; 2MJH A; 2UXC H; 2LF0 A; 3FAU A; 4JV5 H; 4AR0 A; 1XMQ H; 1ZZK A; 4LFC H; 2DGR A; 4B3S H; 2M6Q A; 3SB1 A; 2VKC A; 3J81 W; 2CTF A; 2HH3 A; 1ODH A; 4NXM H; 4NZR M; 1ZZI A; 3AEV B; 1EC6 A; 3U1K A; 2UXD H; 2CWF A; 5K36 G; 4JI7 H; 2OPU A; 4DR3 H; 2UUC H; 2FMR A; 4AIM A; 1VBI A; 3OTO H; 1HNZ H; 4B3T H; 3KDG A; 4GKK H; 3CDD A; 5IT9 W; 2VQF H; 1IBK H; 2PY9 A; 2X53 1; 4DV7 H; 2PT7 G; 1AN7 A; 1N34 H; 2Z6B D; 2E3U A; 4DV3 H; 5LL6 b; 1K28 D; 1VIH A; 1KHM A; 4QMF B; 2CPQ A; 2X06 A; 1ZTG A; 3VKE A; 2FPH X; 4DR2 H; 4JI0 H; 2W77 A; 3NCV A; 4DV0 H; 2AXY A; 3V69 A; 4LF6 H; 3ADY A; 1PQX A; 5A2Q W; 1S20 A; 5IWA H; 5LMN H; 1UG8 A; 3EZJ A; 1XRH A; 2BA0 A; 4WAL A; 3UOE A; 1N32 H; 4K0K H; 1FJG H; 4X66 H; 1WE8 A; 1J5E H; 1FKA H; 2P2R A; 2L4W A; 2IAH A; 2W76 A; 1WTH D; 1X9Z A; 4JI8 H; 1XNQ H; 2UU9 H; 4JVY A; 4DR1 H; 4DV1 H; 2BL5 A; 2ANR A; 2JEB I; 4X65 H; 2UUB H; 4DR5 H; 4DR4 H; 4IFD G; 4LFB H; 2QND A; 2M8W A; 2JA9 A; 4OCH A; 3GKU A; 4MTK A; 2LTL A; 1ZZV A; 4KHP H; 3OET A; 4AQY H; 1SEI A; 2CTE A; 4DV5 H; 1HNW H; 1WRU A; 5LMU H; 3GR5 A; 2G8Y A; 4JI1 H; 4X62 H; 4B3R H; 2HHH H; 1HR0 H; 2JZX A; 2YQR A; 1V8C A; 4OD6 A; 4EC5 A; 2E5L H; 4LF4 H; 4OX9 H; 1J4W A; 4DV2 H; 3OV5 A; 4DR6 H; 2P5Z X; 4JI2 H; 2LRR A; 3OSS D; 1DTJ A; 4JI4 H; 4PDB A; 2LTM A; 1F0X A; 1HNX H; 2A1S A; 4B8T A; 4OO1 G; 2VQE H; 2ZM6 H; 4BA2 I; 4LF5 H; 4B3M H; 1X4N A; 4X64 H; 3J80 W; 2WZP R; 2JVZ A; 4LF7 H; 1DT4 A; 4LF8 H; 3T1H H; 1MSZ A; 4H8A A; 1X4M A; 2JE6 I; 1V9N A; 4NBQ A; 1N33 H; 2CWH A; 1N36 H; 2O5P A; 4UHV A; 1X0A A; 4G08 A; 1WTJ A; 2OPV A; 2CPM A; 4LIJ A; 1IBL H; 4M0H A; 2W6T A; 4LFA H; 4GKJ H; 4JVH A; 2W75 A; 4JI6 H; 2CTJ A; 4M0N A; 2A02 A; 5FLX W; 4JI5 H; 1J5K A; 1WVN A; 2K1H A; 2M5J A; 4BA1 I; 4DV4 H; 2F4V H; 4LF9 H; 3J7A K; 2UUA H; 2UXB H; 4JI3 H; 4AM3 A; 1IBM H; 5BR8 H; 1Z2I A; 4JTM A; 5C0X G; 1NXU A; 2HH2 A; 4FJU A; 2FFM A; 3GAB A; 1WHR A; 2CTL A; 5JEA G; 1TUA A; 4JYA H; 2W16 A; 2D9I A; 1XMO H; 2D1U A; 3JAM W; 2CTM A; 4NZT M; 5DT9 A; 4DUZ H; 4DV6 H; 4DUY H; 1S03 G; 3D37 A; 2W78 A; 2ZQE A; 1K1G A; 4WAN A; 3GS9 A; 2JEA I; 1I94 H; 1VIG A; #chains in the Genus database with same CATH homology 3RF2 A; 3KDK A; 2W6U A; 4E9J A; 4YHH H; 2O4C A; 3T1Y H; 4YY3 H; 1I6U A; 1XNR H; 3QD7 X; 4B8C D; 4DR7 H; 2Y3M A; 4NXN H; 2UXC H; 2LF0 A; 3FAU A; 4JV5 H; 4AR0 A; 1XMQ H; 4LFC H; 4B3S H; 3SB1 A; 3J81 W; 2VKC A; 1ODH A; 1WTH D; 2UXD H; 4NXM H; 4NZR M; 4JI7 H; 4DR3 H; 2UUC H; 1HNZ H; 4B3T H; 3OTO H; 4GKK H; 3KDG A; 5IT9 W; 2VQF H; 1IBK H; 2X53 1; 4DV7 H; 2PT7 G; 1AN7 A; 1N34 H; 2Z6B D; 4DV3 H; 5LL6 b; 1K28 D; 2FPH X; 4DR2 H; 4JI0 H; 2W77 A; 3NCV A; 4DV0 H; 4LF6 H; 3ADY A; 5A2Q W; 5IWA H; 5LMN H; 3EZJ A; 1N32 H; 4K0K H; 1FJG H; 4X66 H; 1FKA H; 1J5E H; 2L4W A; 2IAH A; 2W76 A; 1X9Z A; 4JI8 H; 1XNQ H; 2UU9 H; 4DR1 H; 4DV1 H; 2UUB H; 4DR4 H; 4LFB H; 4X65 H; 4DR5 H; 4OCH A; 1ZZV A; 4KHP H; 3OET A; 4AQY H; 1SEI A; 4DV5 H; 1HNW H; 5LMU H; 3GR5 A; 4JI1 H; 4X62 H; 4B3R H; 2HHH H; 1HR0 H; 4OD6 A; 4EC5 A; 2E5L H; 4LF4 H; 4OX9 H; 3OV5 A; 4DV2 H; 4DR6 H; 4JI2 H; 3OSS D; 4JI4 H; 4PDB A; 1F0X A; 1HNX H; 2VQE H; 2ZM6 H; 4LF5 H; 4B3M H; 4X64 H; 3J80 W; 2WZP R; 4LF7 H; 4LF8 H; 3T1H H; 1N33 H; 1N36 H; 2O5P A; 4G08 A; 1IBL H; 2W6T A; 4LFA H; 4GKJ H; 2W75 A; 4JI6 H; 4M0N A; 2A02 A; 5FLX W; 4JI5 H; 2M5J A; 4DV4 H; 2F4V H; 4LF9 H; 3J7A K; 2UUA H; 2UXB H; 4JI3 H; 1IBM H; 5BR8 H; 4JTM A; 3GAB A; 4JYA H; 2W16 A; 2D9I A; 1XMO H; 2D1U A; 3JAM W; 4NZT M; 4DUZ H; 5DT9 A; 4DV6 H; 1S03 G; 4DUY H; 4M0H A; 2W78 A; 2ZQE A; 3GS9 A; 1I94 H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
