3GR5 | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	153
structure length	153
Chain Sequence	MSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Escherichia coli
publication title	A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. pubmed doi rcsb
molecule keywords	EscC
total genus	39
structure length	153
sequence length	153
ec nomenclature
pdb deposition date	2009-03-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	3gr5A02
3.55.50.30	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Phage tail protein beta-alpha-beta fold	3gr5A01

4M0NA 2Y3MA 2A02A 2O5PA 2W6UA 4E9JA 4G08A 2D1UA 2IAHA 4JTMA 4M0HA 1ZZVA 2W16A 2M5JA 2W77A 3EZJA 2W75A 3GR5A 2W78A 4EC5A 2W76A 2W6TA 4AR0A 3OSSD
chains in the Genus database with same CATH superfamily

2O4CA 1VBIA 2FMRA 1F0XA 3T1YH 1XNRH 1S03G 2JEBI 4JI3H 3J80W 2UUBH 1WRUA 1WHRA 2LF0A 4E9JA 3OETA 1MSZA 4G08A 4DV0H 2UXCH 1UG8A 1HR0H 1K1GA 2IAHA 2LTLA 2ANRA 4JTMA 4M0HA 1FKAH 4WANA 4JI4H 2CTFA 1S20A 1KHMA 1ZZVA 2P5ZX 2NN6G 4DUZH 3GKUA 3I0PA 4NXMH 2K1HA 2M5JA 4JVHA 1NXUA 4JI6H 2UXDH 4DR4H 2W77A 1X4NA 2CWHA 2DGRA 3EZJA 4DR3H 4PDBA 2W75A 2VQEH 4EC5A 1ZTGA 3GS9A 3OV5A 1X9ZA 2W6TA 1HNZH 3RF2A 5K36G 1ODHA 4B3TH 5FLXW 3OSSD 1V8CA 4DV1H 3VKEA 1J5EH 4M0NA 4LF8H 4H8AA 3JAMW 4X65H 5BR8H 4IFDG 4DR5H 4LF9H 1XNQH 1N32H 4K0KH 3D37A 2L4WA 1X0AA 1ZZKA 5C0XG 4AQYH 1IBKH 1N33H 2VKCA 4YHHH 2Z6BD 3T1HH 5A2QW 2E5LH 2LRRA 4NZRM 2CTEA 2X531 4BA1I 2M8WA 4LF5H 3V69A 3FAUA 4AM3A 3SB1A 1I94H 2JZXA 2CPQA 4OCHA 4YY3H 1WVNA 4DR2H 4DV6H 5IWAH 5JEAG 3J81W 2JE6I 1HNWH 2ZQEA 2G8YA 1DT4A 4B3SH 4LFBH 3CDDA 1PQXA 2Z0SA 2E3UA 2UUCH 2PQUA 3J7AK 4LFCH 2F4VH 4DV5H 4MTKA 2AXYA 4AR0A 4NXNH 1IBLH 1ZZJA 2JVZA 1I6UA 2YQRA 2CTLA 4FJSA 1FJGH 2JEAI 2A02A 2O5PA 1AN7A 2PT7G 4NZTM 5DT9A 2CTMA 2FFMA 1TUAA 2BL5A 3NCVA 4B3MH 4JI2H 3GABA 3KDGA 4LFAH 1SEIA 2UXBH 4OX9H 2CPMA 4B3RH 2HH2A 4X66H 1VIGA 3U1KA 2LTMA 2CTJA 4FJUA 5IT9W 1DTJA 3ADYA 1WE8A 4DV4H 3QD7X 4JV5H 1K28D 5LMNH 4GKJH 1XRHA 3GR5A 3L7ZC 4DV3H 1XMQH 4DV2H 1J4WA 2W76A 4X64H 2OPVA 4LF4H 2OPUA 2HHHH 3AEVB 1ZZIA 4DV7H 4DR6H 1V9NA 4LIJA 2A1SA 1VIHA 1Z2IA 2Y3MA 4JI7H 4BA2I 2HH3A 4DR1H 2W6UA 4AIMA 4JI8H 4OO1G 4GKKH 4KHPH 2P2RA 2CWFA 4WALA 4X62H 1EC6A 4JI0H 2X06A 1WTHD 1X4MA 2D9IA 2WZPR 3UOEA 4DUYH 2D1UA 2BA0A 2FPHX 4JI1H 4LF7H 4JVYA 2PY9A 5LL6b 4UHVA 1N36H 1N34H 4LF6H 4NBQA 4JI5H 1HNXH 1XMOH 2MJHA 4QMFB 2W16A 1WTJA 2CTKA 4OD6A 3OTOH 4B8TA 1J5KA 2ANNA 4DR7H 2W78A 3KDKA 4B8CD 2JA9A 5LMUH 2UUAH 2ZM6H 4JYAH 2VQFH 2UU9H 1IBMH 2QNDA 2M6QA
chains in the Genus database with same CATH topology

2O4CA 1F0XA 3T1YH 1XNRH 1S03G 4JI3H 3J80W 2UUBH 2LF0A 4E9JA 3OETA 4G08A 2UXCH 4DV0H 1HR0H 2IAHA 4JTMA 4M0HA 1FKAH 4JI4H 1ZZVA 4DUZH 4NXMH 2M5JA 2UXDH 4JI6H 2W77A 4DR4H 3EZJA 4PDBA 4DR3H 2W75A 2VQEH 4EC5A 3GS9A 3OV5A 1X9ZA 2W6TA 1HNZH 3RF2A 1ODHA 4B3TH 5FLXW 4DV1H 3OSSD 1J5EH 4M0NA 4LF8H 3JAMW 4X65H 5BR8H 4DR5H 4LF9H 1XNQH 1N32H 4K0KH 2L4WA 4AQYH 1IBKH 1N33H 2VKCA 4YHHH 2Z6BD 3T1HH 5A2QW 2E5LH 4NZRM 2X531 4LF5H 3FAUA 3SB1A 1I94H 4YY3H 4OCHA 4DR2H 1HNWH 4DV6H 5IWAH 3J81W 2ZQEA 4B3SH 4LFBH 2UUCH 3J7AK 4LFCH 2F4VH 4DV5H 4AR0A 4NXNH 1IBLH 1I6UA 1FJGH 2A02A 2O5PA 1AN7A 2PT7G 4NZTM 5DT9A 3NCVA 4B3MH 4JI2H 3GABA 3KDGA 4LFAH 1SEIA 2UXBH 4OX9H 4B3RH 4X66H 5IT9W 3ADYA 4DV4H 3QD7X 4JV5H 1K28D 5LMNH 4GKJH 3GR5A 4DV3H 1XMQH 4DV2H 2W76A 4X64H 4LF4H 2HHHH 4DR6H 4DV7H 2Y3MA 4JI7H 4DR1H 2W6UA 4JI8H 4GKKH 4KHPH 1WTHD 4X62H 4JI0H 2D9IA 2WZPR 4DUYH 2D1UA 2FPHX 4JI1H 4LF7H 5LL6b 1N36H 1N34H 4LF6H 4JI5H 1HNXH 1XMOH 2W16A 4OD6A 3OTOH 4DR7H 2W78A 3KDKA 4B8CD 5LMUH 2UUAH 4JYAH 2ZM6H 2VQFH 2UU9H 1IBMH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4M0N A;  2Y3M A;  2A02 A;  2O5P A;  2W6U A;  4E9J A;  4G08 A;  2D1U A;  2IAH A;  4JTM A;  4M0H A;  1ZZV A;  2W16 A;  2M5J A;  2W77 A;  3EZJ A;  2W75 A;  3GR5 A;  2W78 A;  4EC5 A;  2W76 A;  2W6T A;  4AR0 A;  3OSS D; 
#chains in the Genus database with same CATH topology
 2O4C A;  1VBI A;  2FMR A;  1F0X A;  3T1Y H;  1XNR H;  1S03 G;  2JEB I;  4JI3 H;  3J80 W;  2UUB H;  1WRU A;  1WHR A;  2LF0 A;  4E9J A;  3OET A;  1MSZ A;  4G08 A;  4DV0 H;  2UXC H;  1UG8 A;  1HR0 H;  1K1G A;  2IAH A;  2LTL A;  2ANR A;  4JTM A;  4M0H A;  1FKA H;  4WAN A;  4JI4 H;  2CTF A;  1S20 A;  1KHM A;  1ZZV A;  2P5Z X;  2NN6 G;  4DUZ H;  3GKU A;  3I0P A;  4NXM H;  2K1H A;  2M5J A;  4JVH A;  1NXU A;  4JI6 H;  2UXD H;  4DR4 H;  2W77 A;  1X4N A;  2CWH A;  2DGR A;  3EZJ A;  4DR3 H;  4PDB A;  2W75 A;  2VQE H;  4EC5 A;  1ZTG A;  3GS9 A;  3OV5 A;  1X9Z A;  2W6T A;  1HNZ H;  3RF2 A;  5K36 G;  1ODH A;  4B3T H;  5FLX W;  3OSS D;  1V8C A;  4DV1 H;  3VKE A;  1J5E H;  4M0N A;  4LF8 H;  4H8A A;  3JAM W;  4X65 H;  5BR8 H;  4IFD G;  4DR5 H;  4LF9 H;  1XNQ H;  1N32 H;  4K0K H;  3D37 A;  2L4W A;  1X0A A;  1ZZK A;  5C0X G;  4AQY H;  1IBK H;  1N33 H;  2VKC A;  4YHH H;  2Z6B D;  3T1H H;  5A2Q W;  2E5L H;  2LRR A;  4NZR M;  2CTE A;  2X53 1;  4BA1 I;  2M8W A;  4LF5 H;  3V69 A;  3FAU A;  4AM3 A;  3SB1 A;  1I94 H;  2JZX A;  2CPQ A;  4OCH A;  4YY3 H;  1WVN A;  4DR2 H;  4DV6 H;  5IWA H;  5JEA G;  3J81 W;  2JE6 I;  1HNW H;  2ZQE A;  2G8Y A;  1DT4 A;  4B3S H;  4LFB H;  3CDD A;  1PQX A;  2Z0S A;  2E3U A;  2UUC H;  2PQU A;  3J7A K;  4LFC H;  2F4V H;  4DV5 H;  4MTK A;  2AXY A;  4AR0 A;  4NXN H;  1IBL H;  1ZZJ A;  2JVZ A;  1I6U A;  2YQR A;  2CTL A;  4FJS A;  1FJG H;  2JEA I;  2A02 A;  2O5P A;  1AN7 A;  2PT7 G;  4NZT M;  5DT9 A;  2CTM A;  2FFM A;  1TUA A;  2BL5 A;  3NCV A;  4B3M H;  4JI2 H;  3GAB A;  3KDG A;  4LFA H;  1SEI A;  2UXB H;  4OX9 H;  2CPM A;  4B3R H;  2HH2 A;  4X66 H;  1VIG A;  3U1K A;  2LTM A;  2CTJ A;  4FJU A;  5IT9 W;  1DTJ A;  3ADY A;  1WE8 A;  4DV4 H;  3QD7 X;  4JV5 H;  1K28 D;  5LMN H;  4GKJ H;  1XRH A;  3GR5 A;  3L7Z C;  4DV3 H;  1XMQ H;  4DV2 H;  1J4W A;  2W76 A;  4X64 H;  2OPV A;  4LF4 H;  2OPU A;  2HHH H;  3AEV B;  1ZZI A;  4DV7 H;  4DR6 H;  1V9N A;  4LIJ A;  2A1S A;  1VIH A;  1Z2I A;  2Y3M A;  4JI7 H;  4BA2 I;  2HH3 A;  4DR1 H;  2W6U A;  4AIM A;  4JI8 H;  4OO1 G;  4GKK H;  4KHP H;  2P2R A;  2CWF A;  4WAL A;  4X62 H;  1EC6 A;  4JI0 H;  2X06 A;  1WTH D;  1X4M A;  2D9I A;  2WZP R;  3UOE A;  4DUY H;  2D1U A;  2BA0 A;  2FPH X;  4JI1 H;  4LF7 H;  4JVY A;  2PY9 A;  5LL6 b;  4UHV A;  1N36 H;  1N34 H;  4LF6 H;  4NBQ A;  4JI5 H;  1HNX H;  1XMO H;  2MJH A;  4QMF B;  2W16 A;  1WTJ A;  2CTK A;  4OD6 A;  3OTO H;  4B8T A;  1J5K A;  2ANN A;  4DR7 H;  2W78 A;  3KDK A;  4B8C D;  2JA9 A;  5LMU H;  2UUA H;  2ZM6 H;  4JYA H;  2VQF H;  2UU9 H;  1IBM H;  2QND A;  2M6Q A; 
#chains in the Genus database with same CATH homology
 2O4C A;  1F0X A;  3T1Y H;  1XNR H;  1S03 G;  4JI3 H;  3J80 W;  2UUB H;  2LF0 A;  4E9J A;  3OET A;  4G08 A;  2UXC H;  4DV0 H;  1HR0 H;  2IAH A;  4JTM A;  4M0H A;  1FKA H;  4JI4 H;  1ZZV A;  4DUZ H;  4NXM H;  2M5J A;  2UXD H;  4JI6 H;  2W77 A;  4DR4 H;  3EZJ A;  4PDB A;  4DR3 H;  2W75 A;  2VQE H;  4EC5 A;  3GS9 A;  3OV5 A;  1X9Z A;  2W6T A;  1HNZ H;  3RF2 A;  1ODH A;  4B3T H;  5FLX W;  4DV1 H;  3OSS D;  1J5E H;  4M0N A;  4LF8 H;  3JAM W;  4X65 H;  5BR8 H;  4DR5 H;  4LF9 H;  1XNQ H;  1N32 H;  4K0K H;  2L4W A;  4AQY H;  1IBK H;  1N33 H;  2VKC A;  4YHH H;  2Z6B D;  3T1H H;  5A2Q W;  2E5L H;  4NZR M;  2X53 1;  4LF5 H;  3FAU A;  3SB1 A;  1I94 H;  4YY3 H;  4OCH A;  4DR2 H;  1HNW H;  4DV6 H;  5IWA H;  3J81 W;  2ZQE A;  4B3S H;  4LFB H;  2UUC H;  3J7A K;  4LFC H;  2F4V H;  4DV5 H;  4AR0 A;  4NXN H;  1IBL H;  1I6U A;  1FJG H;  2A02 A;  2O5P A;  1AN7 A;  2PT7 G;  4NZT M;  5DT9 A;  3NCV A;  4B3M H;  4JI2 H;  3GAB A;  3KDG A;  4LFA H;  1SEI A;  2UXB H;  4OX9 H;  4B3R H;  4X66 H;  5IT9 W;  3ADY A;  4DV4 H;  3QD7 X;  4JV5 H;  1K28 D;  5LMN H;  4GKJ H;  3GR5 A;  4DV3 H;  1XMQ H;  4DV2 H;  2W76 A;  4X64 H;  4LF4 H;  2HHH H;  4DR6 H;  4DV7 H;  2Y3M A;  4JI7 H;  4DR1 H;  2W6U A;  4JI8 H;  4GKK H;  4KHP H;  1WTH D;  4X62 H;  4JI0 H;  2D9I A;  2WZP R;  4DUY H;  2D1U A;  2FPH X;  4JI1 H;  4LF7 H;  5LL6 b;  1N36 H;  1N34 H;  4LF6 H;  4JI5 H;  1HNX H;  1XMO H;  2W16 A;  4OD6 A;  3OTO H;  4DR7 H;  2W78 A;  3KDK A;  4B8C D;  5LMU H;  2UUA H;  4JYA H;  2ZM6 H;  2VQF H;  2UU9 H;  1IBM H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GR5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN