The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
140
|
structure length |
140
|
Chain Sequence |
GFVAKDDSLRTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDKQNDGI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
pubmed doi rcsb |
| molecule tags |
Cell invasion
|
| source organism |
Salmonella enterica subsp. enterica serovar typhimurium
|
| molecule keywords |
Protein InvG
|
| total genus |
40
|
| structure length |
140
|
| sequence length |
140
|
| ec nomenclature | |
| pdb deposition date | 2012-07-09 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
#chains in the Genus database with same CATH superfamily 2W77 A; 1ZZV A; 4E9J A; 2M5J A; 2W16 A; 4G08 A; 2Y3M A; 2D1U A; 3OSS D; 2W6U A; 4M0H A; 2W76 A; 4JTM A; 2IAH A; 4AR0 A; 2W6T A; 2A02 A; 3EZJ A; 4EC5 A; 2W75 A; 2W78 A; 2O5P A; 4M0N A; 3GR5 A; #chains in the Genus database with same CATH topology 1N34 H; 4JI1 H; 2VQE H; 4PDB A; 2HHH H; 3KDK A; 4NZT M; 2DGR A; 2Z6B D; 4WAL A; 4JI8 H; 4JV5 H; 4DUY H; 2LRR A; 1MSZ A; 1ZZJ A; 2G8Y A; 4JVH A; 3OSS D; 2UUB H; 3VKE A; 2ANR A; 4JI0 H; 4DR7 H; 2M6Q A; 3QD7 X; 5FLX W; 4LF5 H; 4BA1 I; 1FKA H; 1ODH A; 1IBL H; 2VQF H; 4AR0 A; 4LF8 H; 4LIJ A; 1NXU A; 5IWA H; 2A02 A; 3EZJ A; 1IBM H; 2UXC H; 4X62 H; 1V8C A; 1WTJ A; 3OTO H; 3ADY A; 4NZR M; 2JEB I; 1ZTG A; 2O4C A; 4K0K H; 2W78 A; 1HNX H; 4B8C D; 4LF6 H; 2QND A; 2D9I A; 2ANN A; 2FMR A; 4DR2 H; 4LFB H; 1X0A A; 4LFC H; 4WAN A; 2X06 A; 3V69 A; 3JAM W; 4DUZ H; 4LFA H; 1WRU A; 2W77 A; 4GKK H; 1ZZV A; 4FJS A; 2UUA H; 4JI7 H; 1F0X A; 1HNZ H; 2UXD H; 1X9Z A; 2ZM6 H; 1J4W A; 4LF4 H; 2CTK A; 3I0P A; 3NCV A; 5JEA G; 2PT7 G; 3SB1 A; 1Z2I A; 3D37 A; 2W16 A; 4B3T H; 2Y3M A; 2D1U A; 2W6U A; 1N33 H; 4M0H A; 4DR3 H; 1XMQ H; 3UOE A; 2A1S A; 5LMN H; 4H8A A; 1WHR A; 5BR8 H; 2CTJ A; 2JEA I; 2M8W A; 5LMU H; 1N36 H; 1KHM A; 4AM3 A; 3OET A; 4DR4 H; 4JI4 H; 4JI5 H; 1V9N A; 1ZZK A; 2JVZ A; 1XRH A; 2LTM A; 4OD6 A; 3FAU A; 2HH3 A; 4YHH H; 2BA0 A; 4OO1 G; 4JI3 H; 1XMO H; 1XNQ H; 2CTM A; 4DR1 H; 2CWF A; 3GR5 A; 2JZX A; 1AN7 A; 2PQU A; 2P5Z X; 2WZP R; 2ZQE A; 2FPH X; 4DV2 H; 4NXM H; 4AIM A; 1X4N A; 1TUA A; 4BA2 I; 2K1H A; 1K1G A; 4DR5 H; 4G08 A; 1FJG H; 4MTK A; 2OPU A; 2CTL A; 1I94 H; 1DT4 A; 4X66 H; 4B8T A; 4X64 H; 3J80 W; 2CPQ A; 2FFM A; 4B3R H; 5DT9 A; 4DV4 H; 2E5L H; 1I6U A; 2W76 A; 2E3U A; 4JI2 H; 4DV3 H; 2AXY A; 4DR6 H; 1EC6 A; 3GS9 A; 3U1K A; 2W6T A; 1K28 D; 2L4W A; 1SEI A; 2BL5 A; 3GAB A; 4EC5 A; 4NBQ A; 4IFD G; 4JVY A; 4OCH A; 1N32 H; 1X4M A; 4JI6 H; 2NN6 G; 4M0N A; 2UXB H; 2UUC H; 1XNR H; 3CDD A; 4LF9 H; 4UHV A; 2LTL A; 1PQX A; 4FJU A; 2JA9 A; 2YQR A; 1UG8 A; 4B3M H; 3T1H H; 3J81 W; 1J5E H; 5A2Q W; 4AQY H; 2P2R A; 4NXN H; 1WTH D; 4E9J A; 2M5J A; 4DV6 H; 2IAH A; 2UU9 H; 1WVN A; 4DV1 H; 3GKU A; 2CPM A; 3RF2 A; 3J7A K; 4QMF B; 4GKJ H; 2X53 1; 4YY3 H; 2LF0 A; 3OV5 A; 5C0X G; 4LF7 H; 1VIG A; 4OX9 H; 3KDG A; 1HR0 H; 1DTJ A; 4B3S H; 4JTM A; 4DV7 H; 4DV5 H; 5IT9 W; 2CWH A; 4X65 H; 1S03 G; 4KHP H; 1IBK H; 2PY9 A; 5LL6 b; 1HNW H; 2W75 A; 2HH2 A; 4JYA H; 1WE8 A; 3T1Y H; 1ZZI A; 2Z0S A; 3AEV B; 5K36 G; 2O5P A; 2OPV A; 2JE6 I; 1VBI A; 2CTF A; 2VKC A; 4DV0 H; 3L7Z C; 2MJH A; 1J5K A; 1S20 A; 2CTE A; 1VIH A; 2F4V H; #chains in the Genus database with same CATH homology 1N34 H; 4JI1 H; 2VQE H; 4PDB A; 2HHH H; 3KDK A; 4NZT M; 2Z6B D; 4JI8 H; 4JV5 H; 4DUY H; 3OSS D; 2UUB H; 4JI0 H; 4DR7 H; 3QD7 X; 5FLX W; 4LF5 H; 1FKA H; 1ODH A; 1IBL H; 2VQF H; 4AR0 A; 4LF8 H; 5IWA H; 2A02 A; 3EZJ A; 1IBM H; 2UXC H; 4X62 H; 3OTO H; 3ADY A; 4NZR M; 2W78 A; 2O4C A; 1HNX H; 4B8C D; 4LF6 H; 2D9I A; 4DR2 H; 4LFB H; 4LFC H; 3JAM W; 4DUZ H; 4LFA H; 2W77 A; 4GKK H; 1ZZV A; 2UUA H; 4JI7 H; 1F0X A; 1HNZ H; 2UXD H; 1X9Z A; 2ZM6 H; 4LF4 H; 3NCV A; 2W16 A; 2PT7 G; 3SB1 A; 4B3T H; 2Y3M A; 2D1U A; 2W6U A; 1N33 H; 4M0H A; 4DR3 H; 1XMQ H; 5LMN H; 5BR8 H; 5LMU H; 1N36 H; 2IAH A; 3OET A; 4DR4 H; 4JI4 H; 4JI5 H; 4OD6 A; 3FAU A; 4YHH H; 4JI3 H; 1XMO H; 1XNQ H; 4DR1 H; 3GR5 A; 2WZP R; 1AN7 A; 2ZQE A; 2FPH X; 4DV2 H; 4NXM H; 4DR5 H; 4G08 A; 1FJG H; 1I94 H; 4X66 H; 4X64 H; 3J80 W; 4B3R H; 5DT9 A; 4DV4 H; 2E5L H; 1I6U A; 2W76 A; 4JI2 H; 4DV3 H; 4DR6 H; 3GS9 A; 2W6T A; 1K28 D; 2L4W A; 1SEI A; 4EC5 A; 3GAB A; 4OCH A; 1N32 H; 4JI6 H; 4M0N A; 2UXB H; 2UUC H; 1XNR H; 4LF9 H; 4B3M H; 3T1H H; 3J81 W; 1J5E H; 5A2Q W; 4AQY H; 4NXN H; 1WTH D; 4E9J A; 2M5J A; 4DV6 H; 2UU9 H; 4DV1 H; 2X53 1; 3RF2 A; 3J7A K; 4GKJ H; 4YY3 H; 2LF0 A; 3OV5 A; 4LF7 H; 4OX9 H; 3KDG A; 1HR0 H; 4B3S H; 4JTM A; 4DV7 H; 4DV5 H; 5IT9 W; 4X65 H; 1S03 G; 4KHP H; 1IBK H; 5LL6 b; 1HNW H; 2W75 A; 4JYA H; 3T1Y H; 2O5P A; 2VKC A; 4DV0 H; 4K0K H; 2F4V H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
