The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
95
|
sequence length |
410
|
structure length |
405
|
Chain Sequence |
PDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGGTHTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELDGPVGALGTPLMGEYAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| source organism |
Neisseria gonorrhoeae fa 1090
|
| publication title |
Crystal Structures of the Lytic Transglycosylase MltA from N.gonorrhoeae and E.coli: Insights into Interdomain Movements and Substrate Binding.
pubmed doi rcsb |
| molecule keywords |
GNA33
|
| total genus |
95
|
| structure length |
405
|
| sequence length |
410
|
| ec nomenclature |
ec
3.2.1.-: |
| pdb deposition date | 2006-02-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03562 | MltA | MltA specific insert domain |
| A | PF06725 | 3D | 3D domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain | ||
| Mainly Beta | Beta Barrel | Ribosomal Protein L25; Chain P | Barwin-like endoglucanases |
#chains in the Genus database with same CATH superfamily 3SUM A; 4JP7 A; 1OA7 A; 2PJJ A; 4FG4 A; 1OA9 A; 2G5D A; 3D30 A; 3SUJ A; 3X2K A; 4FER A; 2PIC A; 3ENG A; 3X2N A; 3X2J A; 5GLX A; 2HCZ X; 3X2H A; 4AVR A; 3X2M A; 4JP6 A; 2PNW A; 4ENG A; 2AE0 X; 1WC2 A; 3SUL A; 3X2L A; 2ENG A; 4FFT A; 3SUK A; 5GM9 A; 2PI8 A; 3M3G A; 1HD5 A; 3X2I A; 2G6G A; 3X2P A; 3CZB A; 4L48 A; 2KQA A; 1BW3 A; 1BW4 A; 1N10 A; 1L8F A; 4JS7 A; 3X2O A; 4JJO A; 4FG2 A; 4ZM7 A; 4JCW A; 5GLY A; 2GAE A; 5H4U A; 2BH0 A; 3X2G A; #chains in the Genus database with same CATH topology 1PQH A; 2E2H A; 4KOD A; 4CRZ A; 1OA7 A; 3GTM A; 1VHY A; 4C2M A; 4QIW A; 2NYA A; 1S3S A; 4FER A; 1KQG A; 3ENG A; 2R92 A; 2NVY A; 5B6C A; 3GTG A; 2JA7 A; 1K83 A; 2HCZ X; 5GAE W; 1FDI A; 2WB1 A; 1R27 A; 5BNZ A; 2AE0 X; 4WCE S; 5T5I D; 4J3C A; 2RD2 A; 2NAP A; 3HU2 A; 3SUL A; 1UDX A; 4AYB A; 1IW7 D; 1PT0 A; 1FDO A; 2VPW A; 2VPX A; 1G8K A; 4WFB S; 1O0B A; 2JIP A; 1WCM A; 2G6G A; 3X2I A; 3CZB A; 1V6Z A; 1I3Q A; 3X1L B; 4WFN S; 3X2O A; 5FTN A; 1QCS A; 2YUJ A; 1PT1 A; 2E2I A; 2JIO A; 4AAY A; 1PQF A; 4FG2 A; 1E18 A; 1KQF A; 3H0G A; 2CX8 A; 3DLL S; 2IV2 X; 2JIM A; 4E8B A; 2PJH B; 2EEO B; 1H0H A; 3W2W B; 1ZJW A; 5DM6 S; 4H3S A; 1Z85 A; 4FG4 A; 1CZ5 A; 1AA6 A; 1QRU A; 2NWA A; 2A6E D; 3X2N A; 1I50 A; 5FTL A; 3DMR A; 3X2H A; 4AVR A; 3X2M A; 5HL7 S; 4JXX A; 1FEU A; 3GTQ A; 1EU1 A; 3TIW A; 2DMR A; 2A68 D; 3QC8 A; 1SMY D; 1WLF A; 5C18 A; 1E60 A; 3HU3 A; 2ENG A; 3X2L A; 3TM7 B; 4H4K A; 1E32 A; 3SUK A; 3O5A A; 1DMS A; 3M3G A; 3IR6 A; 2Y0S A; 4GA6 A; 5DYG A; 1ZC1 A; 1O0C A; 1Y1V A; 1BW3 A; 4L69 A; 3GTJ A; 1L8F A; 1R9T A; 1TWG A; 4JS7 A; 5IZN A; 4JJO A; 5GAD W; 2JA5 A; 2JA6 A; 2YU9 A; 2HZ7 A; 1DMR A; 1E61 A; 1Y5I A; 5FTK A; 3GTL A; 4RV0 A; 1TMO A; 1OGY A; 2VPZ A; 3PIO S; 1R7R A; 4JCW A; 1CR5 A; 4D7Z B; 5GLY A; 4ZM7 A; 2Z0Y A; 5GAG W; 2GAE A; 5H4U A; 2R93 A; 2PMZ A; 4JYZ A; 3W2V B; 4P2B A; 5GLF A; 1YLE A; 4JP7 A; 1TWF A; 3X2K A; 1NYL A; 3D30 A; 4DMR A; 4GA5 A; 4CRY G; 3QQ8 A; 5JVH S; 1AW8 B; 3X2J A; 2JIR A; 4V19 4; 5C1B A; 4JP6 A; 3PIP S; 2PNW A; 1PYQ A; 2BE5 D; 4ENG A; 1WC2 A; 1EXD A; 1Y1W A; 3IR7 A; 5DM7 S; 1YNJ D; 2V45 A; 1E5V A; 4FFT A; 1H5N A; 2ZJR S; 5GM9 A; 2KI8 A; 4KDI A; 1Q16 A; 1D6K A; 4NOH A; 1G8J A; 1N10 A; 1VHK A; 1EUQ A; 3CF2 A; 4KO8 A; 2V3V A; 5FTM A; 3GTK A; 4KLN A; 2O5J D; 1GTS A; 1SFO A; 1SIW A; 5DYI A; 3J7Z V; 5FTJ A; 3GTO A; 1PQE A; 3HU1 A; 1PPY A; 1PYU B; 2RE8 A; 4IO9 S; 2BH0 A; 4AON B; 2VPY A; 1QRT A; 3SUM A; 3KW2 A; 2PJJ A; 1DFU P; 1GTR A; 1OA9 A; 2G5D A; 3SUJ A; 2WAQ A; 2NVX A; 4IOA S; 2PIC A; 1UHD A; 1YNN D; 2ZJQ S; 4WF9 S; 5GLX A; 2B63 A; 4AZD A; 1TWC A; 3OUG A; 1QDN A; 5GAH W; 4UY8 8; 1EUY A; 4JXZ A; 2E7Z A; 3FKI A; 4U67 S; 1VC3 B; 1UHE A; 3HKZ A; 3ML1 A; 5T5M D; 1ZYR D; 2A6H D; 2PI8 A; 1TWH A; 3IR5 A; 3QWZ A; 1HD5 A; 4KDL A; 3QQ7 A; 5EPP A; 3PLX B; 4L48 A; 2KQA A; 3X2P A; 2A69 D; 2VUM A; 1BW4 A; 1NXZ A; 5JVG S; 1Y4Z A; 3CF5 S; 2CW0 D; 2C45 A; 2R7Z A; 2EGW A; 3AII A; 2EGV A; 3CQZ A; 2JIQ A; 1QRS A; 1TWA A; 1QTQ A; 4CS0 A; 1B75 A; 4AOK B; 1CZ4 A; 2ZJP S; 4WFA S; 4IOC S; 3GTP A; 3X2G A; #chains in the Genus database with same CATH homology 1PQH A; 2E2H A; 4KOD A; 4CRZ A; 1OA7 A; 3GTM A; 4C2M A; 4QIW A; 2NYA A; 1S3S A; 4FER A; 1KQG A; 3ENG A; 2R92 A; 2NVY A; 5B6C A; 3GTG A; 2JA7 A; 1K83 A; 2HCZ X; 1FDI A; 2WB1 A; 1R27 A; 2AE0 X; 5T5I D; 2NAP A; 3HU2 A; 3SUL A; 4AYB A; 1IW7 D; 1PT0 A; 1FDO A; 2VPW A; 2VPX A; 1G8K A; 2JIP A; 3X2I A; 2G6G A; 1WCM A; 3CZB A; 1I3Q A; 3X2O A; 5FTN A; 1QCS A; 2YUJ A; 1PT1 A; 2E2I A; 2JIO A; 4AAY A; 1PQF A; 4FG2 A; 1E18 A; 1KQF A; 3H0G A; 2IV2 X; 2JIM A; 2PJH B; 2EEO B; 1H0H A; 4FG4 A; 1CZ5 A; 1AA6 A; 3X2N A; 2A6E D; 1I50 A; 5FTL A; 3DMR A; 3X2H A; 4AVR A; 3X2M A; 3GTQ A; 1EU1 A; 3TIW A; 2DMR A; 2A68 D; 3QC8 A; 1SMY D; 1WLF A; 5C18 A; 1E60 A; 3X2L A; 2ENG A; 3HU3 A; 3TM7 B; 1E32 A; 3SUK A; 3O5A A; 3M3G A; 1DMS A; 3IR6 A; 2Y0S A; 4GA6 A; 5DYG A; 1ZC1 A; 1Y1V A; 1BW3 A; 3GTJ A; 1L8F A; 1R9T A; 1TWG A; 4JS7 A; 4JJO A; 2JA5 A; 2JA6 A; 2YU9 A; 1DMR A; 1E61 A; 1Y5I A; 5FTK A; 3GTL A; 4RV0 A; 1TMO A; 1OGY A; 2VPZ A; 4ZM7 A; 4JCW A; 1CR5 A; 1R7R A; 5GLY A; 4D7Z B; 2GAE A; 5H4U A; 2R93 A; 2PMZ A; 5GLF A; 1YLE A; 4JP7 A; 1TWF A; 3X2K A; 3D30 A; 4DMR A; 4GA5 A; 4CRY G; 3QQ8 A; 1AW8 B; 3X2J A; 2JIR A; 5C1B A; 4JP6 A; 2PNW A; 1PYQ A; 2BE5 D; 4ENG A; 1WC2 A; 1Y1W A; 3IR7 A; 1YNJ D; 2V45 A; 1E5V A; 4FFT A; 1H5N A; 5GM9 A; 2KI8 A; 4KDI A; 1Q16 A; 4NOH A; 1G8J A; 1N10 A; 3CF2 A; 4KO8 A; 2V3V A; 5FTM A; 3GTK A; 4KLN A; 2O5J D; 1SFO A; 1SIW A; 5DYI A; 5FTJ A; 3GTO A; 1PQE A; 3HU1 A; 1PPY A; 1PYU B; 2BH0 A; 4AON B; 2VPY A; 3SUM A; 2PJJ A; 1OA9 A; 2G5D A; 3SUJ A; 2WAQ A; 2NVX A; 2PIC A; 1UHD A; 1YNN D; 5GLX A; 2B63 A; 4AZD A; 1TWC A; 3OUG A; 1QDN A; 2E7Z A; 3FKI A; 1VC3 B; 1UHE A; 3HKZ A; 3ML1 A; 5T5M D; 1ZYR D; 2A6H D; 2PI8 A; 1TWH A; 3IR5 A; 3QWZ A; 1HD5 A; 3X2P A; 3QQ7 A; 4KDL A; 4L48 A; 3PLX B; 2KQA A; 5EPP A; 2A69 D; 1BW4 A; 2VUM A; 1Y4Z A; 2CW0 D; 2C45 A; 2R7Z A; 3CQZ A; 2JIQ A; 1TWA A; 4CS0 A; 4AOK B; 1CZ4 A; 3GTP A; 3X2G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
