2GAEA

Crystal structure of mlta from e. coli
Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
333
structure length
333
Chain Sequence
KPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPEAGHRAGWYNHYGRVWVLKTA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII'2 (323-326)TIV7 (282-285)TI1 (26-29)S11 (289-298)TI2 (32-35)TVIII1 (39-42)AH7 (240-249)S9 (254-259)S1 (41-44)TVIII2 (44-47)O1 (47-49)TIV2 (53-56)AH2 (71-90)TI8 (299-302)TI3 (93-96)3H1 (98-100)S2 (102-107)TIV4 (147-150)S3 (115-123)AH3 (153-158)AH6 (228-237)AH4 (173-182)S4 (125-129)TII'1 (133-136)S5 (138-141)TIV5 (162-165)S6 (166-170)AH5 (211-217)S8 (196-203)TI9 (319-322)TI6 (266-269)S13 (326-333)TIV8 (283-286)TI7 (281-284)TII2 (286-289)AH1 (56-69)TVIII3 (219-222)3H2 (223-225)S12 (304-317)TII1 (273-276)S10 (277-280)TIV3 (109-112)S7 (185-188)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Crystal Structures of the Lytic Transglycosylase MltA from N.gonorrhoeae and E.coli: Insights into Interdomain Movements and Substrate Binding.
pubmed doi rcsb
molecule keywords Membrane-bound lytic murein transglycosylase A
total genus 89
structure length 333
sequence length 333
ec nomenclature ec 4.2.2.n1: Peptidoglycan lytic exotransglycosylase.
pdb deposition date 2006-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2gaeA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2gaeA02
3X2LA 1L8FA 2GAEA 4JP7A 3X2NA 3CZBA 1OA9A 3ENGA 4FFTA 4FG2A 5H4UA 3X2GA 1BW3A 3SUKA 3SULA 3M3GA 2PNWA 3D30A 1OA7A 3X2KA 2PICA 2AE0X 4ZM7A 2PI8A 2BH0A 3X2PA 2HCZX 3SUJA 4AVRA 1N10A 4FG4A 3X2OA 2KQAA 2ENGA 1BW4A 4FERA 3X2MA 3X2JA 5GLYA 4JJOA 1WC2A 3SUMA 4ENGA 5GLXA 3X2IA 3X2HA 4JCWA 1HD5A 2PJJA 4JP6A 2G6GA 4L48A 5GM9A 4JS7A 2G5DA
chains in the Genus database with same CATH superfamily
1NXZA 5GADW 1NYLA 4WFBS 1EU1A 2HZ7A 4U67S 2NVYA 1TMOA 5GAHW 4JXXA 1DFUP 5DM6S 4AAYA 5T5ID 3QQ7A 2JA5A 4CRZA 4RV0A 5GLFA 2VPYA 3HU3A 1GTRA 3PIPS 2A69D 1PQHA 3W2VB 1QRTA 3X2GA 5H4UA 4IOAS 2EEOB 2BE5D 3SUKA 3M3GA 3SULA 2RD2A 5HL7S 2JA7A 1YNND 1ZJWA 3X2KA 1QRUA 1PT1A 2AE0X 1KQFA 1D6KA 1FEUA 4KO8A 5FTLA 2BH0A 3HKZA 4KDIA 1ZYRD 1N10A 1Y5IA 4FG4A 5T5MD 1BW4A 2ENGA 3X2MA 3X2JA 5GLYA 4IOCS 5JVGS 1EXDA 1UDXA 2JIOA 2KI8A 5B6CA 4AOKB 1E5VA 1VHYA 3DLLS 3KW2A 1PQFA 4JP6A 4NOHA 2ZJRS 3IR6A 1R7RA 3GTOA 1WCMA 2RE8A 5BNZA 1DMSA 2G5DA 1PQEA 3X2LA 1YLEA 4H3SA 1O0BA 1E61A 4H4KA 1R9TA 3J7ZV 1TWHA 5FTNA 1G8KA 2EGVA 1I50A 1AW8B 4E8BA 3CZBA 2R92A 1PT0A 5GAGW 3ENGA 4FFTA 4CRYG 3CF5S 2YUJA 3AIIA 1TWFA 1TWGA 3QQ8A 2Y0SA 1G8JA 1E18A 1OA7A 2CW0D 4JYZA 4GA5A 2E7ZA 2E2IA 4JXZA 3W2WB 2O5JD 4FERA 1YNJD 3GTQA 4C2MA 4L69A 1PYQA 2DMRA 4JJOA 3TM7B 2VUMA 2ZJPS 1IW7D 2A6HD 1SIWA 3X2HA 5IZNA 4UY88 1Z85A 4JCWA 1HD5A 2PJJA 1KQGA 1Y1WA 2C45A 4L48A 1I3QA 1PYUB 5FTMA 2EGWA 1QCSA 3TIWA 4WF9S 2VPXA 2PJHB 1H5NA 3IR5A 2A68D 3FKIA 3QC8A 5FTKA 4J3CA 2PMZA 4JP7A 1OGYA 1ZC1A 1EUQA 2VPZA 3IR7A 2VPWA 3DMRA 3CQZA 2NYAA 2ZJQS 1OA9A 1E60A 1CZ4A 2WAQA 4FG2A 3GTJA 1UHDA 4AYBA 1BW3A 2PNWA 1VC3B 4WFNS 2V45A 4KODA 1TWAA 3GTKA 4ZM7A 4IO9S 2B63A 2PI8A 3X2PA 3GTPA 3SUJA 4DMRA 1GTSA 4KDLA 5DM7S 2WB1A 2KQAA 2JIQA 4KLNA 3GTMA 3SUMA 4ENGA 5GLXA 3GTGA 2R93A 1UHEA 4AONB 1QRSA 4AZDA 5C18A 3ML1A 1V6ZA 5EPPA 2Z0YA 2IV2X 4QIWA 2G6GA 2A6ED 1FDOA 2V3VA 5FTJA 3X2NA 5GM9A 4JS7A 2JIMA 2E2HA 1Y4ZA 1CZ5A 4WFAS 1R27A 1SFOA 1L8FA 1S3SA 1O0CA 5DYIA 2GAEA 3PLXB 5DYGA 1K83A 2CX8A 5C1BA 4GA6A 1WLFA 4P2BA 3HU2A 5GAEW 3X1LB 2R7ZA 1CR5A 3O5AA 1H0HA 1E32A 1TWCA 1FDIA 3HU1A 3D30A 2NAPA 2PICA 1QDNA 1SMYD 3H0GA 3PIOS 3CF2A 3QWZA 4AVRA 2HCZX 4CS0A 1AA6A 1B75A 3X2OA 1DMRA 2JIPA 4WCES 3OUGA 1PPYA 5JVHS 1EUYA 2NVXA 3GTLA 2JA6A 1WC2A 4V194 2NWAA 1Y1VA 3X2IA 2JIRA 2YU9A 1Q16A 4D7ZB 1VHKA 1QTQA
chains in the Genus database with same CATH topology
1EU1A 2NVYA 1TMOA 4AAYA 5T5ID 3QQ7A 2JA5A 4CRZA 4RV0A 5GLFA 2VPYA 3HU3A 2A69D 1PQHA 3X2GA 5H4UA 2EEOB 3SUKA 3SULA 3M3GA 2BE5D 2JA7A 1YNND 3X2KA 1PT1A 2AE0X 1KQFA 4KO8A 5FTLA 2BH0A 3HKZA 4KDIA 1ZYRD 1N10A 1Y5IA 4FG4A 1BW4A 5T5MD 2ENGA 3X2MA 3X2JA 5GLYA 2JIOA 2KI8A 5B6CA 4AOKB 1E5VA 1PQFA 4JP6A 4NOHA 3IR6A 1R7RA 3GTOA 1WCMA 1DMSA 2G5DA 1PQEA 3X2LA 1YLEA 1E61A 1R9TA 1TWHA 5FTNA 1G8KA 1I50A 1AW8B 3CZBA 2R92A 1PT0A 3ENGA 4FFTA 4CRYG 2YUJA 1TWFA 1TWGA 3QQ8A 2Y0SA 1G8JA 1OA7A 1E18A 2CW0D 4GA5A 2E7ZA 2E2IA 2O5JD 4FERA 1YNJD 3GTQA 4C2MA 1PYQA 4JJOA 2DMRA 3TM7B 2VUMA 1IW7D 2A6HD 1SIWA 3X2HA 4JCWA 1HD5A 2PJJA 1KQGA 1Y1WA 2C45A 4L48A 1I3QA 1PYUB 5FTMA 1QCSA 3TIWA 2VPXA 2PJHB 1H5NA 3IR5A 2A68D 3FKIA 3QC8A 5FTKA 4JP7A 2PMZA 1OGYA 1ZC1A 2VPZA 3IR7A 2VPWA 3DMRA 3CQZA 2NYAA 1OA9A 1E60A 1CZ4A 2WAQA 4FG2A 3GTJA 1BW3A 1UHDA 4AYBA 2PNWA 1VC3B 2V45A 4KODA 1TWAA 3GTKA 4ZM7A 2B63A 2PI8A 3X2PA 3GTPA 3SUJA 4DMRA 4KDLA 2WB1A 2KQAA 2JIQA 4KLNA 3GTMA 3SUMA 4ENGA 5GLXA 3GTGA 2R93A 1UHEA 4AONB 4AZDA 5C18A 3ML1A 5EPPA 2IV2X 4QIWA 2G6GA 2A6ED 1FDOA 3X2NA 2V3VA 5FTJA 5GM9A 4JS7A 2JIMA 2E2HA 1Y4ZA 1CZ5A 1R27A 1SFOA 1L8FA 1S3SA 5DYIA 2GAEA 3PLXB 5DYGA 1K83A 5C1BA 4GA6A 1WLFA 3HU2A 2R7ZA 1CR5A 3O5AA 1H0HA 1E32A 1TWCA 1FDIA 3HU1A 3D30A 2NAPA 2PICA 1QDNA 1SMYD 3H0GA 3CF2A 3QWZA 4AVRA 2HCZX 4CS0A 1AA6A 3X2OA 1DMRA 2JIPA 3OUGA 1PPYA 2NVXA 3GTLA 2JA6A 1WC2A 1Y1VA 3X2IA 2JIRA 2YU9A 1Q16A 4D7ZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2L A;  1L8F A;  2GAE A;  4JP7 A;  3X2N A;  3CZB A;  1OA9 A;  3ENG A;  4FFT A;  4FG2 A;  5H4U A;  3X2G A;  1BW3 A;  3SUK A;  3SUL A;  3M3G A;  2PNW A;  3D30 A;  1OA7 A;  3X2K A;  2PIC A;  2AE0 X;  4ZM7 A;  2PI8 A;  2BH0 A;  3X2P A;  2HCZ X;  3SUJ A;  4AVR A;  1N10 A;  4FG4 A;  3X2O A;  2KQA A;  2ENG A;  1BW4 A;  4FER A;  3X2M A;  3X2J A;  5GLY A;  4JJO A;  1WC2 A;  3SUM A;  4ENG A;  5GLX A;  3X2I A;  3X2H A;  4JCW A;  1HD5 A;  2PJJ A;  4JP6 A;  2G6G A;  4L48 A;  5GM9 A;  4JS7 A;  2G5D A; 
#chains in the Genus database with same CATH topology
 1NXZ A;  5GAD W;  1NYL A;  4WFB S;  1EU1 A;  2HZ7 A;  4U67 S;  2NVY A;  1TMO A;  5GAH W;  4JXX A;  1DFU P;  5DM6 S;  4AAY A;  5T5I D;  3QQ7 A;  2JA5 A;  4CRZ A;  4RV0 A;  5GLF A;  2VPY A;  3HU3 A;  1GTR A;  3PIP S;  2A69 D;  1PQH A;  3W2V B;  1QRT A;  3X2G A;  5H4U A;  4IOA S;  2EEO B;  2BE5 D;  3SUK A;  3M3G A;  3SUL A;  2RD2 A;  5HL7 S;  2JA7 A;  1YNN D;  1ZJW A;  3X2K A;  1QRU A;  1PT1 A;  2AE0 X;  1KQF A;  1D6K A;  1FEU A;  4KO8 A;  5FTL A;  2BH0 A;  3HKZ A;  4KDI A;  1ZYR D;  1N10 A;  1Y5I A;  4FG4 A;  5T5M D;  1BW4 A;  2ENG A;  3X2M A;  3X2J A;  5GLY A;  4IOC S;  5JVG S;  1EXD A;  1UDX A;  2JIO A;  2KI8 A;  5B6C A;  4AOK B;  1E5V A;  1VHY A;  3DLL S;  3KW2 A;  1PQF A;  4JP6 A;  4NOH A;  2ZJR S;  3IR6 A;  1R7R A;  3GTO A;  1WCM A;  2RE8 A;  5BNZ A;  1DMS A;  2G5D A;  1PQE A;  3X2L A;  1YLE A;  4H3S A;  1O0B A;  1E61 A;  4H4K A;  1R9T A;  3J7Z V;  1TWH A;  5FTN A;  1G8K A;  2EGV A;  1I50 A;  1AW8 B;  4E8B A;  3CZB A;  2R92 A;  1PT0 A;  5GAG W;  3ENG A;  4FFT A;  4CRY G;  3CF5 S;  2YUJ A;  3AII A;  1TWF A;  1TWG A;  3QQ8 A;  2Y0S A;  1G8J A;  1E18 A;  1OA7 A;  2CW0 D;  4JYZ A;  4GA5 A;  2E7Z A;  2E2I A;  4JXZ A;  3W2W B;  2O5J D;  4FER A;  1YNJ D;  3GTQ A;  4C2M A;  4L69 A;  1PYQ A;  2DMR A;  4JJO A;  3TM7 B;  2VUM A;  2ZJP S;  1IW7 D;  2A6H D;  1SIW A;  3X2H A;  5IZN A;  4UY8 8;  1Z85 A;  4JCW A;  1HD5 A;  2PJJ A;  1KQG A;  1Y1W A;  2C45 A;  4L48 A;  1I3Q A;  1PYU B;  5FTM A;  2EGW A;  1QCS A;  3TIW A;  4WF9 S;  2VPX A;  2PJH B;  1H5N A;  3IR5 A;  2A68 D;  3FKI A;  3QC8 A;  5FTK A;  4J3C A;  2PMZ A;  4JP7 A;  1OGY A;  1ZC1 A;  1EUQ A;  2VPZ A;  3IR7 A;  2VPW A;  3DMR A;  3CQZ A;  2NYA A;  2ZJQ S;  1OA9 A;  1E60 A;  1CZ4 A;  2WAQ A;  4FG2 A;  3GTJ A;  1UHD A;  4AYB A;  1BW3 A;  2PNW A;  1VC3 B;  4WFN S;  2V45 A;  4KOD A;  1TWA A;  3GTK A;  4ZM7 A;  4IO9 S;  2B63 A;  2PI8 A;  3X2P A;  3GTP A;  3SUJ A;  4DMR A;  1GTS A;  4KDL A;  5DM7 S;  2WB1 A;  2KQA A;  2JIQ A;  4KLN A;  3GTM A;  3SUM A;  4ENG A;  5GLX A;  3GTG A;  2R93 A;  1UHE A;  4AON B;  1QRS A;  4AZD A;  5C18 A;  3ML1 A;  1V6Z A;  5EPP A;  2Z0Y A;  2IV2 X;  4QIW A;  2G6G A;  2A6E D;  1FDO A;  2V3V A;  5FTJ A;  3X2N A;  5GM9 A;  4JS7 A;  2JIM A;  2E2H A;  1Y4Z A;  1CZ5 A;  4WFA S;  1R27 A;  1SFO A;  1L8F A;  1S3S A;  1O0C A;  5DYI A;  2GAE A;  3PLX B;  5DYG A;  1K83 A;  2CX8 A;  5C1B A;  4GA6 A;  1WLF A;  4P2B A;  3HU2 A;  5GAE W;  3X1L B;  2R7Z A;  1CR5 A;  3O5A A;  1H0H A;  1E32 A;  1TWC A;  1FDI A;  3HU1 A;  3D30 A;  2NAP A;  2PIC A;  1QDN A;  1SMY D;  3H0G A;  3PIO S;  3CF2 A;  3QWZ A;  4AVR A;  2HCZ X;  4CS0 A;  1AA6 A;  1B75 A;  3X2O A;  1DMR A;  2JIP A;  4WCE S;  3OUG A;  1PPY A;  5JVH S;  1EUY A;  2NVX A;  3GTL A;  2JA6 A;  1WC2 A;  4V19 4;  2NWA A;  1Y1V A;  3X2I A;  2JIR A;  2YU9 A;  1Q16 A;  4D7Z B;  1VHK A;  1QTQ A; 
#chains in the Genus database with same CATH homology
 1EU1 A;  2NVY A;  1TMO A;  4AAY A;  5T5I D;  3QQ7 A;  2JA5 A;  4CRZ A;  4RV0 A;  5GLF A;  2VPY A;  3HU3 A;  2A69 D;  1PQH A;  3X2G A;  5H4U A;  2EEO B;  3SUK A;  3SUL A;  3M3G A;  2BE5 D;  2JA7 A;  1YNN D;  3X2K A;  1PT1 A;  2AE0 X;  1KQF A;  4KO8 A;  5FTL A;  2BH0 A;  3HKZ A;  4KDI A;  1ZYR D;  1N10 A;  1Y5I A;  4FG4 A;  1BW4 A;  5T5M D;  2ENG A;  3X2M A;  3X2J A;  5GLY A;  2JIO A;  2KI8 A;  5B6C A;  4AOK B;  1E5V A;  1PQF A;  4JP6 A;  4NOH A;  3IR6 A;  1R7R A;  3GTO A;  1WCM A;  1DMS A;  2G5D A;  1PQE A;  3X2L A;  1YLE A;  1E61 A;  1R9T A;  1TWH A;  5FTN A;  1G8K A;  1I50 A;  1AW8 B;  3CZB A;  2R92 A;  1PT0 A;  3ENG A;  4FFT A;  4CRY G;  2YUJ A;  1TWF A;  1TWG A;  3QQ8 A;  2Y0S A;  1G8J A;  1OA7 A;  1E18 A;  2CW0 D;  4GA5 A;  2E7Z A;  2E2I A;  2O5J D;  4FER A;  1YNJ D;  3GTQ A;  4C2M A;  1PYQ A;  4JJO A;  2DMR A;  3TM7 B;  2VUM A;  1IW7 D;  2A6H D;  1SIW A;  3X2H A;  4JCW A;  1HD5 A;  2PJJ A;  1KQG A;  1Y1W A;  2C45 A;  4L48 A;  1I3Q A;  1PYU B;  5FTM A;  1QCS A;  3TIW A;  2VPX A;  2PJH B;  1H5N A;  3IR5 A;  2A68 D;  3FKI A;  3QC8 A;  5FTK A;  4JP7 A;  2PMZ A;  1OGY A;  1ZC1 A;  2VPZ A;  3IR7 A;  2VPW A;  3DMR A;  3CQZ A;  2NYA A;  1OA9 A;  1E60 A;  1CZ4 A;  2WAQ A;  4FG2 A;  3GTJ A;  1BW3 A;  1UHD A;  4AYB A;  2PNW A;  1VC3 B;  2V45 A;  4KOD A;  1TWA A;  3GTK A;  4ZM7 A;  2B63 A;  2PI8 A;  3X2P A;  3GTP A;  3SUJ A;  4DMR A;  4KDL A;  2WB1 A;  2KQA A;  2JIQ A;  4KLN A;  3GTM A;  3SUM A;  4ENG A;  5GLX A;  3GTG A;  2R93 A;  1UHE A;  4AON B;  4AZD A;  5C18 A;  3ML1 A;  5EPP A;  2IV2 X;  4QIW A;  2G6G A;  2A6E D;  1FDO A;  3X2N A;  2V3V A;  5FTJ A;  5GM9 A;  4JS7 A;  2JIM A;  2E2H A;  1Y4Z A;  1CZ5 A;  1R27 A;  1SFO A;  1L8F A;  1S3S A;  5DYI A;  2GAE A;  3PLX B;  5DYG A;  1K83 A;  5C1B A;  4GA6 A;  1WLF A;  3HU2 A;  2R7Z A;  1CR5 A;  3O5A A;  1H0H A;  1E32 A;  1TWC A;  1FDI A;  3HU1 A;  3D30 A;  2NAP A;  2PIC A;  1QDN A;  1SMY D;  3H0G A;  3CF2 A;  3QWZ A;  4AVR A;  2HCZ X;  4CS0 A;  1AA6 A;  3X2O A;  1DMR A;  2JIP A;  3OUG A;  1PPY A;  2NVX A;  3GTL A;  2JA6 A;  1WC2 A;  1Y1V A;  3X2I A;  2JIR A;  2YU9 A;  1Q16 A;  4D7Z B; 
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