2PI8A

Crystal structure of e. coli mlta with bound chitohexaose
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
335
structure length
331
Chain Sequence
SKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLIAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFAIYQGIGPEAGHRAGWYNHYGRVWVLKTAP
5010015020025030030025020015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S14 (306-313)TI1 (6-9)TI4 (89-92)TIV1 (7-10)TIV2 (12-15)EMPTYTVIII1 (19-22)S2 (82-86)S1 (22-23)TI2 (73-76)TI3 (78-81)TI8 (279-282)TIV4 (33-36)AH1 (36-49)TIV6 (239-242)AH7 (315-323)S12 (284-291)S13 (295-297)TIV5 (92-95)3H3 (153-156)S3 (96-103)TI9 (299-302)S4 (105-109)3H2 (143-145)TVIII2 (109-112)TII'1 (113-116)S6 (146-150)3H1 (126-128)S8 (176-183)TI5 (128-131)AH5 (209-217)AH6 (220-228)3H4 (158-162)TVIII3 (228-231)S7 (165-168)AH4 (191-198)S9 (234-238)TI6 (246-249)TII1 (253-256)TI7 (261-264)TVIII4 (263-266)S11 (271-278)AH2 (51-70)AH3 (133-138)S10 (257-259)TII2 (266-269)TIV9 (303-306)S5 (118-121)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Structure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage
pubmed doi rcsb
molecule keywords Membrane-bound lytic murein transglycosylase A
total genus 72
structure length 331
sequence length 335
chains with identical sequence B, C, D
ec nomenclature ec 4.2.2.n1: Peptidoglycan lytic exotransglycosylase.
pdb deposition date 2007-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pi8A01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pi8A02
2G6GA 1N10A 2PICA 4JJOA 4JP6A 5GLXA 3X2KA 1HD5A 3X2HA 3X2OA 3X2JA 1BW3A 4ZM7A 4FG4A 5GM9A 2KQAA 2HCZX 3D30A 3M3GA 3X2MA 1OA9A 1L8FA 3ENGA 4L48A 4FFTA 4JCWA 3X2IA 3SUJA 4FG2A 3SUKA 2PI8A 3CZBA 2G5DA 2BH0A 3SULA 4FERA 1OA7A 5GLYA 1WC2A 3X2LA 3SUMA 2GAEA 4ENGA 1BW4A 2ENGA 5H4UA 2PNWA 3X2NA 3X2GA 2PJJA 4JS7A 3X2PA 4AVRA 4JP7A 2AE0X
chains in the Genus database with same CATH superfamily
2VPWA 1BW3A 3X1LB 2V3VA 3W2VB 2R7ZA 5HL7S 4ZM7A 1UHDA 2E7ZA 2JA7A 2KQAA 1Y4ZA 5GAHW 1IW7D 1WLFA 1Y1VA 3IR6A 1CZ5A 4CRZA 1L8FA 4L48A 3GTGA 4H4KA 4H3SA 1D6KA 1SMYD 1G8KA 1TMOA 1QCSA 1DMRA 1TWCA 1YNND 2A6ED 2KI8A 1PYUB 4KO8A 4CS0A 2R93A 5DYGA 5GLYA 2EEOB 4NOHA 4AYBA 4IOAS 4AZDA 3HKZA 2EGWA 1AA6A 2ZJPS 3GTKA 1O0CA 2ENGA 5FTMA 5H4UA 4CRYG 2A6HD 1SIWA 4GA6A 5T5ID 5GADW 1O0BA 2PNWA 4WF9S 3DLLS 1QDNA 1EXDA 2JIRA 1FDOA 4AVRA 4C2MA 5C1BA 5GAGW 2AE0X 2NYAA 3GTLA 3GTOA 2JA6A 1TWFA 4JJOA 2HZ7A 2BE5D 1Q16A 4V194 4J3CA 2WB1A 1TWHA 3TIWA 1NYLA 5FTJA 5FTNA 2HCZX 3H0GA 1PQEA 2IV2X 2O5JD 3IR5A 3X2IA 3PIOS 2JIPA 1GTRA 5GAEW 4QIWA 2G5DA 3SULA 2DMRA 3CQZA 3HU3A 3QQ7A 1FDIA 4AONB 1PQFA 2Z0YA 1R27A 5BNZA 4GA5A 4IO9S 2GAEA 1OGYA 2NVYA 2A69D 2JIOA 3W2WB 1B75A 2ZJQS 4WFBS 3O5AA 5FTKA 4P2BA 4D7ZB 2Y0SA 3X2NA 1PYQA 1VC3B 1V6ZA 5JVHS 3GTQA 1QRSA 2PJJA 2NAPA 4JS7A 1E32A 3X2PA 1UDXA 3AIIA 1G8JA 4WFNS 4WFAS 3X2OA 1KQGA 3ML1A 4KDLA 5GLXA 3X2JA 2PICA 3X2KA 3X2HA 4AAYA 5JVGS 1GTSA 4JXZA 4KDIA 5DYIA 4FG4A 4JYZA 4IOCS 1H0HA 4UY88 2C45A 1PT1A 3HU2A 1VHKA 5IZNA 3QQ8A 1UHEA 3X2MA 1OA9A 1E5VA 4JCWA 5T5MD 1PT0A 4FG2A 2PMZA 5EPPA 3GTMA 1KQFA 2CX8A 2EGVA 3CZBA 3KW2A 2BH0A 1SFOA 3PIPS 3PLXB 2ZJRS 1H5NA 1CZ4A 5DM6S 3X2LA 1OA7A 1WC2A 2NVXA 1EUYA 2JA5A 2B63A 4ENGA 1I50A 2E2IA 1QRUA 3TM7B 2V45A 4JXXA 2E2HA 3DMRA 2R92A 1ZYRD 1S3SA 3X2GA 4AOKB 1I3QA 3HU1A 1QRTA 5B6CA 4JP7A 1BW4A 2JIQA 1K83A 1NXZA 2VPXA 1TWGA 2G6GA 1N10A 4RV0A 4DMRA 1E61A 1VHYA 3GTJA 1HD5A 1PPYA 1ZJWA 2VUMA 5GM9A 2CW0D 5GLFA 3D30A 3GTPA 1Y1WA 1Y5IA 2NWAA 4L69A 3M3GA 2VPZA 2PJHB 2VPYA 3ENGA 1EUQA 4FFTA 2YUJA 1PQHA 3SUKA 1YLEA 3SUJA 1DFUP 2PI8A 4KLNA 4WCES 3J7ZV 1DMSA 5FTLA 4FERA 1E18A 3CF2A 5DM7S 2RE8A 3SUMA 1E60A 3QC8A 1FEUA 1TWAA 3FKIA 1ZC1A 3IR7A 3CF5S 1QTQA 4KODA 2WAQA 4E8BA 1EU1A 3OUGA 1YNJD 3QWZA 1R9TA 2JIMA 1AW8B 2A68D 1CR5A 4U67S 1R7RA 1WCMA 2YU9A 2RD2A 1Z85A 4JP6A 5C18A
chains in the Genus database with same CATH topology
2VPWA 1BW3A 2V3VA 2R7ZA 4ZM7A 1UHDA 2E7ZA 2JA7A 2KQAA 1Y4ZA 1IW7D 1WLFA 1Y1VA 3IR6A 1CZ5A 4CRZA 1L8FA 4L48A 3GTGA 1SMYD 1G8KA 1TMOA 1QCSA 1DMRA 1TWCA 1YNND 2A6ED 2KI8A 1PYUB 4KO8A 4CS0A 2R93A 5DYGA 5GLYA 2EEOB 4NOHA 4AYBA 4AZDA 3HKZA 1AA6A 3GTKA 2ENGA 5FTMA 5H4UA 4CRYG 2A6HD 1SIWA 4GA6A 5T5ID 2PNWA 1QDNA 2JIRA 4AVRA 1FDOA 4C2MA 5C1BA 2AE0X 2NYAA 3GTLA 3GTOA 2JA6A 1TWFA 4JJOA 2BE5D 1Q16A 2WB1A 1TWHA 3TIWA 5FTJA 5FTNA 2HCZX 3H0GA 1PQEA 2IV2X 2O5JD 3X2IA 3IR5A 2JIPA 4QIWA 2G5DA 3SULA 2DMRA 3CQZA 3HU3A 3QQ7A 1FDIA 4AONB 1PQFA 1R27A 4GA5A 2GAEA 1OGYA 2NVYA 2A69D 2JIOA 3O5AA 5FTKA 4D7ZB 3X2NA 2Y0SA 1PYQA 1VC3B 3GTQA 2PJJA 4JS7A 3X2PA 1E32A 2NAPA 1G8JA 3X2OA 1KQGA 3ML1A 4KDLA 5GLXA 3X2JA 2PICA 3X2KA 3X2HA 4AAYA 4KDIA 5DYIA 4FG4A 1H0HA 2C45A 1PT1A 3HU2A 3QQ8A 3X2MA 1UHEA 1OA9A 1E5VA 4JCWA 5T5MD 1PT0A 4FG2A 2PMZA 5EPPA 3GTMA 1KQFA 3CZBA 2BH0A 1SFOA 3PLXB 1CZ4A 1H5NA 3X2LA 1OA7A 1WC2A 2NVXA 2JA5A 2B63A 4ENGA 1I50A 2E2IA 3TM7B 2V45A 2E2HA 3DMRA 2R92A 1ZYRD 3X2GA 1S3SA 4AOKB 1I3QA 3HU1A 5B6CA 1BW4A 4JP7A 2JIQA 1K83A 2VPXA 1TWGA 2G6GA 1N10A 4RV0A 4DMRA 1E61A 3GTJA 1HD5A 1PPYA 2VUMA 5GM9A 2CW0D 5GLFA 3D30A 3GTPA 1Y1WA 1Y5IA 3M3GA 2VPZA 2PJHB 2VPYA 3ENGA 4FFTA 2YUJA 3SUJA 3SUKA 1PQHA 1YLEA 2PI8A 4KLNA 1DMSA 5FTLA 4FERA 1E18A 3CF2A 3SUMA 1E60A 3QC8A 1TWAA 3FKIA 1ZC1A 3IR7A 4KODA 2WAQA 1EU1A 3OUGA 1YNJD 3QWZA 1R9TA 2JIMA 1AW8B 2A68D 1CR5A 1R7RA 1WCMA 2YU9A 4JP6A 5C18A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G6G A;  1N10 A;  2PIC A;  4JJO A;  4JP6 A;  5GLX A;  3X2K A;  1HD5 A;  3X2H A;  3X2O A;  3X2J A;  1BW3 A;  4ZM7 A;  4FG4 A;  5GM9 A;  2KQA A;  2HCZ X;  3D30 A;  3M3G A;  3X2M A;  1OA9 A;  1L8F A;  3ENG A;  4L48 A;  4FFT A;  4JCW A;  3X2I A;  3SUJ A;  4FG2 A;  3SUK A;  2PI8 A;  3CZB A;  2G5D A;  2BH0 A;  3SUL A;  4FER A;  1OA7 A;  5GLY A;  1WC2 A;  3X2L A;  3SUM A;  2GAE A;  4ENG A;  1BW4 A;  2ENG A;  5H4U A;  2PNW A;  3X2N A;  3X2G A;  2PJJ A;  4JS7 A;  3X2P A;  4AVR A;  4JP7 A;  2AE0 X; 
#chains in the Genus database with same CATH topology
 2VPW A;  1BW3 A;  3X1L B;  2V3V A;  3W2V B;  2R7Z A;  5HL7 S;  4ZM7 A;  1UHD A;  2E7Z A;  2JA7 A;  2KQA A;  1Y4Z A;  5GAH W;  1IW7 D;  1WLF A;  1Y1V A;  3IR6 A;  1CZ5 A;  4CRZ A;  1L8F A;  4L48 A;  3GTG A;  4H4K A;  4H3S A;  1D6K A;  1SMY D;  1G8K A;  1TMO A;  1QCS A;  1DMR A;  1TWC A;  1YNN D;  2A6E D;  2KI8 A;  1PYU B;  4KO8 A;  4CS0 A;  2R93 A;  5DYG A;  5GLY A;  2EEO B;  4NOH A;  4AYB A;  4IOA S;  4AZD A;  3HKZ A;  2EGW A;  1AA6 A;  2ZJP S;  3GTK A;  1O0C A;  2ENG A;  5FTM A;  5H4U A;  4CRY G;  2A6H D;  1SIW A;  4GA6 A;  5T5I D;  5GAD W;  1O0B A;  2PNW A;  4WF9 S;  3DLL S;  1QDN A;  1EXD A;  2JIR A;  1FDO A;  4AVR A;  4C2M A;  5C1B A;  5GAG W;  2AE0 X;  2NYA A;  3GTL A;  3GTO A;  2JA6 A;  1TWF A;  4JJO A;  2HZ7 A;  2BE5 D;  1Q16 A;  4V19 4;  4J3C A;  2WB1 A;  1TWH A;  3TIW A;  1NYL A;  5FTJ A;  5FTN A;  2HCZ X;  3H0G A;  1PQE A;  2IV2 X;  2O5J D;  3IR5 A;  3X2I A;  3PIO S;  2JIP A;  1GTR A;  5GAE W;  4QIW A;  2G5D A;  3SUL A;  2DMR A;  3CQZ A;  3HU3 A;  3QQ7 A;  1FDI A;  4AON B;  1PQF A;  2Z0Y A;  1R27 A;  5BNZ A;  4GA5 A;  4IO9 S;  2GAE A;  1OGY A;  2NVY A;  2A69 D;  2JIO A;  3W2W B;  1B75 A;  2ZJQ S;  4WFB S;  3O5A A;  5FTK A;  4P2B A;  4D7Z B;  2Y0S A;  3X2N A;  1PYQ A;  1VC3 B;  1V6Z A;  5JVH S;  3GTQ A;  1QRS A;  2PJJ A;  2NAP A;  4JS7 A;  1E32 A;  3X2P A;  1UDX A;  3AII A;  1G8J A;  4WFN S;  4WFA S;  3X2O A;  1KQG A;  3ML1 A;  4KDL A;  5GLX A;  3X2J A;  2PIC A;  3X2K A;  3X2H A;  4AAY A;  5JVG S;  1GTS A;  4JXZ A;  4KDI A;  5DYI A;  4FG4 A;  4JYZ A;  4IOC S;  1H0H A;  4UY8 8;  2C45 A;  1PT1 A;  3HU2 A;  1VHK A;  5IZN A;  3QQ8 A;  1UHE A;  3X2M A;  1OA9 A;  1E5V A;  4JCW A;  5T5M D;  1PT0 A;  4FG2 A;  2PMZ A;  5EPP A;  3GTM A;  1KQF A;  2CX8 A;  2EGV A;  3CZB A;  3KW2 A;  2BH0 A;  1SFO A;  3PIP S;  3PLX B;  2ZJR S;  1H5N A;  1CZ4 A;  5DM6 S;  3X2L A;  1OA7 A;  1WC2 A;  2NVX A;  1EUY A;  2JA5 A;  2B63 A;  4ENG A;  1I50 A;  2E2I A;  1QRU A;  3TM7 B;  2V45 A;  4JXX A;  2E2H A;  3DMR A;  2R92 A;  1ZYR D;  1S3S A;  3X2G A;  4AOK B;  1I3Q A;  3HU1 A;  1QRT A;  5B6C A;  4JP7 A;  1BW4 A;  2JIQ A;  1K83 A;  1NXZ A;  2VPX A;  1TWG A;  2G6G A;  1N10 A;  4RV0 A;  4DMR A;  1E61 A;  1VHY A;  3GTJ A;  1HD5 A;  1PPY A;  1ZJW A;  2VUM A;  5GM9 A;  2CW0 D;  5GLF A;  3D30 A;  3GTP A;  1Y1W A;  1Y5I A;  2NWA A;  4L69 A;  3M3G A;  2VPZ A;  2PJH B;  2VPY A;  3ENG A;  1EUQ A;  4FFT A;  2YUJ A;  1PQH A;  3SUK A;  1YLE A;  3SUJ A;  1DFU P;  2PI8 A;  4KLN A;  4WCE S;  3J7Z V;  1DMS A;  5FTL A;  4FER A;  1E18 A;  3CF2 A;  5DM7 S;  2RE8 A;  3SUM A;  1E60 A;  3QC8 A;  1FEU A;  1TWA A;  3FKI A;  1ZC1 A;  3IR7 A;  3CF5 S;  1QTQ A;  4KOD A;  2WAQ A;  4E8B A;  1EU1 A;  3OUG A;  1YNJ D;  3QWZ A;  1R9T A;  2JIM A;  1AW8 B;  2A68 D;  1CR5 A;  4U67 S;  1R7R A;  1WCM A;  2YU9 A;  2RD2 A;  1Z85 A;  4JP6 A;  5C18 A; 
#chains in the Genus database with same CATH homology
 2VPW A;  1BW3 A;  2V3V A;  2R7Z A;  4ZM7 A;  1UHD A;  2E7Z A;  2JA7 A;  2KQA A;  1Y4Z A;  1IW7 D;  1WLF A;  1Y1V A;  3IR6 A;  1CZ5 A;  4CRZ A;  1L8F A;  4L48 A;  3GTG A;  1SMY D;  1G8K A;  1TMO A;  1QCS A;  1DMR A;  1TWC A;  1YNN D;  2A6E D;  2KI8 A;  1PYU B;  4KO8 A;  4CS0 A;  2R93 A;  5DYG A;  5GLY A;  2EEO B;  4NOH A;  4AYB A;  4AZD A;  3HKZ A;  1AA6 A;  3GTK A;  2ENG A;  5FTM A;  5H4U A;  4CRY G;  2A6H D;  1SIW A;  4GA6 A;  5T5I D;  2PNW A;  1QDN A;  2JIR A;  4AVR A;  1FDO A;  4C2M A;  5C1B A;  2AE0 X;  2NYA A;  3GTL A;  3GTO A;  2JA6 A;  1TWF A;  4JJO A;  2BE5 D;  1Q16 A;  2WB1 A;  1TWH A;  3TIW A;  5FTJ A;  5FTN A;  2HCZ X;  3H0G A;  1PQE A;  2IV2 X;  2O5J D;  3X2I A;  3IR5 A;  2JIP A;  4QIW A;  2G5D A;  3SUL A;  2DMR A;  3CQZ A;  3HU3 A;  3QQ7 A;  1FDI A;  4AON B;  1PQF A;  1R27 A;  4GA5 A;  2GAE A;  1OGY A;  2NVY A;  2A69 D;  2JIO A;  3O5A A;  5FTK A;  4D7Z B;  3X2N A;  2Y0S A;  1PYQ A;  1VC3 B;  3GTQ A;  2PJJ A;  4JS7 A;  3X2P A;  1E32 A;  2NAP A;  1G8J A;  3X2O A;  1KQG A;  3ML1 A;  4KDL A;  5GLX A;  3X2J A;  2PIC A;  3X2K A;  3X2H A;  4AAY A;  4KDI A;  5DYI A;  4FG4 A;  1H0H A;  2C45 A;  1PT1 A;  3HU2 A;  3QQ8 A;  3X2M A;  1UHE A;  1OA9 A;  1E5V A;  4JCW A;  5T5M D;  1PT0 A;  4FG2 A;  2PMZ A;  5EPP A;  3GTM A;  1KQF A;  3CZB A;  2BH0 A;  1SFO A;  3PLX B;  1CZ4 A;  1H5N A;  3X2L A;  1OA7 A;  1WC2 A;  2NVX A;  2JA5 A;  2B63 A;  4ENG A;  1I50 A;  2E2I A;  3TM7 B;  2V45 A;  2E2H A;  3DMR A;  2R92 A;  1ZYR D;  3X2G A;  1S3S A;  4AOK B;  1I3Q A;  3HU1 A;  5B6C A;  1BW4 A;  4JP7 A;  2JIQ A;  1K83 A;  2VPX A;  1TWG A;  2G6G A;  1N10 A;  4RV0 A;  4DMR A;  1E61 A;  3GTJ A;  1HD5 A;  1PPY A;  2VUM A;  5GM9 A;  2CW0 D;  5GLF A;  3D30 A;  3GTP A;  1Y1W A;  1Y5I A;  3M3G A;  2VPZ A;  2PJH B;  2VPY A;  3ENG A;  4FFT A;  2YUJ A;  3SUJ A;  3SUK A;  1PQH A;  1YLE A;  2PI8 A;  4KLN A;  1DMS A;  5FTL A;  4FER A;  1E18 A;  3CF2 A;  3SUM A;  1E60 A;  3QC8 A;  1TWA A;  3FKI A;  1ZC1 A;  3IR7 A;  4KOD A;  2WAQ A;  1EU1 A;  3OUG A;  1YNJ D;  3QWZ A;  1R9T A;  2JIM A;  1AW8 B;  2A68 D;  1CR5 A;  1R7R A;  1WCM A;  2YU9 A;  4JP6 A;  5C18 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.