2PJJ | Genus

Total Genus 94

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	94
sequence length	335
structure length	335
Chain Sequence	SKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFAIYQGIGPEAGHRAGWYNHYGRVWVLKTAP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Structure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage pubmed doi rcsb
molecule keywords	Membrane-bound lytic murein transglycosylase A
total genus	94
structure length	335
sequence length	335
ec nomenclature	ec 4.2.2.n1: Peptidoglycan lytic exotransglycosylase.
pdb deposition date	2007-04-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03562	MltA	MltA specific insert domain
A	PF06725	3D	3D domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.40.10	Mainly Beta	Beta Barrel	Barwin-like endoglucanases	RlpA-like domain	2pjjA01
2.40.240.50	Mainly Beta	Beta Barrel	Ribosomal Protein L25; Chain P	Barwin-like endoglucanases	2pjjA02

2PI8A 3D30A 3X2MA 2GAEA 3X2NA 5GM9A 4ENGA 4JCWA 3X2JA 2KQAA 4ZM7A 4FFTA 4FG4A 4JP7A 3M3GA 3ENGA 3X2LA 3X2OA 1N10A 3SUKA 1L8FA 3X2KA 2G6GA 4JJOA 5GLXA 1OA9A 3SUJA 4FG2A 1BW4A 2PNWA 2HCZX 2PICA 3X2PA 3CZBA 1WC2A 3SUMA 3X2GA 3X2HA 4AVRA 2BH0A 2PJJA 4FERA 3X2IA 4L48A 4JS7A 5H4UA 2AE0X 2G5DA 5GLYA 1OA7A 2ENGA 1BW3A 1HD5A 3SULA 4JP6A
chains in the Genus database with same CATH superfamily

1PQFA 2WAQA 2Y0SA 1E18A 2RE8A 1VC3B 3ML1A 4AZDA 4CS0A 1CZ5A 3TM7B 3X2NA 2R93A 4WFBS 2V3VA 5FTLA 3FKIA 3GTGA 2ZJRS 5GLFA 5GAGW 1VHKA 1NYLA 4JP7A 3DMRA 3GTQA 3M3GA 3X2OA 1N10A 2VPZA 2VPYA 1L8FA 3SUKA 2CX8A 2ZJPS 2G6GA 4JXXA 1WLFA 1PQEA 1TMOA 1AA6A 3O5AA 1ZC1A 4H3SA 1PPYA 2NYAA 2PICA 1GTSA 4CRYG 3CZBA 4RV0A 3J7ZV 5FTNA 2CW0D 3X1LB 2PJJA 2PMZA 1K83A 4FERA 3TIWA 2A69D 4JS7A 5H4UA 2Z0YA 1QDNA 2G5DA 5GLYA 1Y1WA 4E8BA 2YU9A 5DM6S 4KDIA 1R7RA 1Y4ZA 1E32A 4JP6A 5DYIA 2JA6A 1QRTA 1UHDA 1YLEA 1QRSA 3X2MA 2EGWA 3QQ7A 5C18A 4GA6A 5T5MD 4KLNA 1O0BA 1I3QA 4IO9S 2C45A 1EUYA 2VUMA 1E61A 3IR5A 3H0GA 1TWAA 3ENGA 3X2LA 2V45A 3W2WB 5IZNA 3PIOS 1QRUA 5GLXA 1OA9A 1R27A 1ZYRD 4FG2A 2PNWA 5FTJA 1QTQA 2A68D 2PJHB 3QC8A 3HKZA 4QIWA 2JIRA 3SUMA 1WC2A 3X2GA 1YNJD 2VPWA 3CF2A 1R9TA 1IW7D 5BNZA 1D6KA 1TWCA 3QWZA 5FTMA 3W2VB 1PT1A 4L48A 4J3CA 2ZJQS 1CZ4A 1Y1VA 2JIOA 2IV2X 1VHYA 1H5NA 2EGVA 2RD2A 3HU3A 1H0HA 4AOKB 2KI8A 4CRZA 1HD5A 1BW3A 4WCES 3GTKA 1DMSA 4C2MA 2B63A 2PI8A 5C1BA 3IR7A 2JIMA 2JA5A 4WF9S 2GAEA 1Z85A 2DMRA 1FDIA 1PT0A 4ENGA 4JCWA 2A6ED 1PYUB 1E60A 1KQFA 3X2JA 1UDXA 3AIIA 1B75A 5HL7S 2JIPA 1DFUP 1CR5A 4FFTA 4FG4A 1PYQA 2R7ZA 2BE5D 3PIPS 2A6HD 1KQGA 4JYZA 5JVHS 4L69A 1O0CA 4JJOA 2E2IA 1TWFA 1AW8B 1FDOA 3SUJA 1BW4A 5EPPA 1FEUA 2HCZX 4GA5A 5FTKA 5JVGS 5B6CA 1G8KA 1TWHA 2YUJA 4AVRA 1SFOA 2E2HA 1SIWA 1DMRA 2BH0A 4KO8A 3X2IA 3GTPA 3KW2A 4DMRA 1YNND 4V194 4AONB 1PQHA 2R92A 1QCSA 3QQ8A 2JA7A 4KODA 1OA7A 1WCMA 3CQZA 5GAEW 2ENGA 4AYBA 1ZJWA 4WFAS 3SULA 5T5ID 4U67S 1OGYA 3IR6A 3D30A 5GM9A 1E5VA 1NXZA 2KQAA 1I50A 4ZM7A 3DLLS 1EU1A 3GTOA 4IOCS 4IOAS 3HU2A 4WFNS 3X2KA 2NWAA 1GTRA 1V6ZA 3OUGA 4P2BA 1EXDA 5DM7S 2E7ZA 4D7ZB 4UY88 2NVYA 2NAPA 3X2PA 1SMYD 4KDLA 4NOHA 3X2HA 3PLXB 3GTJA 2JIQA 3HU1A 4H4KA 1EUQA 1Q16A 2NVXA 2VPXA 1TWGA 4AAYA 2WB1A 1Y5IA 1UHEA 1G8JA 1S3SA 2AE0X 3GTLA 5GAHW 2EEOB 5GADW 4JXZA 2O5JD 3GTMA 5DYGA 3CF5S 2HZ7A
chains in the Genus database with same CATH topology

1PQFA 2WAQA 2Y0SA 1E18A 1VC3B 3ML1A 4AZDA 4CS0A 1CZ5A 3X2NA 3TM7B 2R93A 2V3VA 5FTLA 3FKIA 3GTGA 5GLFA 4JP7A 3DMRA 3GTQA 3M3GA 3X2OA 1N10A 2VPZA 3SUKA 1L8FA 2VPYA 2G6GA 1WLFA 1PQEA 1TMOA 1AA6A 3O5AA 1ZC1A 1PPYA 2NYAA 2PICA 4CRYG 3CZBA 4RV0A 5FTNA 2CW0D 2PJJA 2PMZA 1K83A 4FERA 3TIWA 2A69D 4JS7A 5H4UA 1QDNA 2G5DA 5GLYA 1Y1WA 2YU9A 4KDIA 4JP6A 1R7RA 1E32A 1Y4ZA 5DYIA 2JA6A 1UHDA 1YLEA 3X2MA 3QQ7A 5C18A 4GA6A 5T5MD 4KLNA 1I3QA 2C45A 2VUMA 1E61A 3IR5A 3H0GA 1TWAA 3ENGA 3X2LA 2V45A 5GLXA 1OA9A 1R27A 1ZYRD 4FG2A 2PNWA 5FTJA 2A68D 2PJHB 3QC8A 3HKZA 4QIWA 2JIRA 3SUMA 1WC2A 3X2GA 1YNJD 2VPWA 3CF2A 1R9TA 1IW7D 1TWCA 3QWZA 5FTMA 1PT1A 4L48A 1CZ4A 1Y1VA 2JIOA 2IV2X 1H5NA 3HU3A 1H0HA 4AOKB 2KI8A 1BW3A 1HD5A 4CRZA 3GTKA 1DMSA 4C2MA 2B63A 2PI8A 5C1BA 3IR7A 2JIMA 2JA5A 2GAEA 2DMRA 4ENGA 1FDIA 1PT0A 4JCWA 2A6ED 1PYUB 1E60A 1KQFA 3X2JA 2JIPA 1CR5A 4FFTA 4FG4A 1PYQA 2R7ZA 2BE5D 2A6HD 1KQGA 4JJOA 2E2IA 1TWFA 3SUJA 1BW4A 1AW8B 1FDOA 5EPPA 2HCZX 4GA5A 5FTKA 5B6CA 1G8KA 1TWHA 4AVRA 2YUJA 1SFOA 2E2HA 1SIWA 2BH0A 1DMRA 4KO8A 3X2IA 3GTPA 4DMRA 1YNND 4AONB 1PQHA 2R92A 1QCSA 3QQ8A 2JA7A 4KODA 1OA7A 1WCMA 3CQZA 2ENGA 4AYBA 3SULA 5T5ID 1OGYA 3IR6A 3D30A 5GM9A 1E5VA 2KQAA 1I50A 4ZM7A 1EU1A 3GTOA 3HU2A 3X2KA 3OUGA 2E7ZA 4D7ZB 2NVYA 2NAPA 3X2PA 1SMYD 4KDLA 3X2HA 4NOHA 3PLXB 3GTJA 2JIQA 3HU1A 1Q16A 2NVXA 2VPXA 1TWGA 4AAYA 2WB1A 1UHEA 1G8JA 2AE0X 1S3SA 1Y5IA 3GTLA 2EEOB 2O5JD 3GTMA 5DYGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2PI8 A;  3D30 A;  3X2M A;  2GAE A;  3X2N A;  5GM9 A;  4ENG A;  4JCW A;  3X2J A;  2KQA A;  4ZM7 A;  4FFT A;  4FG4 A;  4JP7 A;  3M3G A;  3ENG A;  3X2L A;  3X2O A;  1N10 A;  3SUK A;  1L8F A;  3X2K A;  2G6G A;  4JJO A;  5GLX A;  1OA9 A;  3SUJ A;  4FG2 A;  1BW4 A;  2PNW A;  2HCZ X;  2PIC A;  3X2P A;  3CZB A;  1WC2 A;  3SUM A;  3X2G A;  3X2H A;  4AVR A;  2BH0 A;  2PJJ A;  4FER A;  3X2I A;  4L48 A;  4JS7 A;  5H4U A;  2AE0 X;  2G5D A;  5GLY A;  1OA7 A;  2ENG A;  1BW3 A;  1HD5 A;  3SUL A;  4JP6 A; 
#chains in the Genus database with same CATH topology
 1PQF A;  2WAQ A;  2Y0S A;  1E18 A;  2RE8 A;  1VC3 B;  3ML1 A;  4AZD A;  4CS0 A;  1CZ5 A;  3TM7 B;  3X2N A;  2R93 A;  4WFB S;  2V3V A;  5FTL A;  3FKI A;  3GTG A;  2ZJR S;  5GLF A;  5GAG W;  1VHK A;  1NYL A;  4JP7 A;  3DMR A;  3GTQ A;  3M3G A;  3X2O A;  1N10 A;  2VPZ A;  2VPY A;  1L8F A;  3SUK A;  2CX8 A;  2ZJP S;  2G6G A;  4JXX A;  1WLF A;  1PQE A;  1TMO A;  1AA6 A;  3O5A A;  1ZC1 A;  4H3S A;  1PPY A;  2NYA A;  2PIC A;  1GTS A;  4CRY G;  3CZB A;  4RV0 A;  3J7Z V;  5FTN A;  2CW0 D;  3X1L B;  2PJJ A;  2PMZ A;  1K83 A;  4FER A;  3TIW A;  2A69 D;  4JS7 A;  5H4U A;  2Z0Y A;  1QDN A;  2G5D A;  5GLY A;  1Y1W A;  4E8B A;  2YU9 A;  5DM6 S;  4KDI A;  1R7R A;  1Y4Z A;  1E32 A;  4JP6 A;  5DYI A;  2JA6 A;  1QRT A;  1UHD A;  1YLE A;  1QRS A;  3X2M A;  2EGW A;  3QQ7 A;  5C18 A;  4GA6 A;  5T5M D;  4KLN A;  1O0B A;  1I3Q A;  4IO9 S;  2C45 A;  1EUY A;  2VUM A;  1E61 A;  3IR5 A;  3H0G A;  1TWA A;  3ENG A;  3X2L A;  2V45 A;  3W2W B;  5IZN A;  3PIO S;  1QRU A;  5GLX A;  1OA9 A;  1R27 A;  1ZYR D;  4FG2 A;  2PNW A;  5FTJ A;  1QTQ A;  2A68 D;  2PJH B;  3QC8 A;  3HKZ A;  4QIW A;  2JIR A;  3SUM A;  1WC2 A;  3X2G A;  1YNJ D;  2VPW A;  3CF2 A;  1R9T A;  1IW7 D;  5BNZ A;  1D6K A;  1TWC A;  3QWZ A;  5FTM A;  3W2V B;  1PT1 A;  4L48 A;  4J3C A;  2ZJQ S;  1CZ4 A;  1Y1V A;  2JIO A;  2IV2 X;  1VHY A;  1H5N A;  2EGV A;  2RD2 A;  3HU3 A;  1H0H A;  4AOK B;  2KI8 A;  4CRZ A;  1HD5 A;  1BW3 A;  4WCE S;  3GTK A;  1DMS A;  4C2M A;  2B63 A;  2PI8 A;  5C1B A;  3IR7 A;  2JIM A;  2JA5 A;  4WF9 S;  2GAE A;  1Z85 A;  2DMR A;  1FDI A;  1PT0 A;  4ENG A;  4JCW A;  2A6E D;  1PYU B;  1E60 A;  1KQF A;  3X2J A;  1UDX A;  3AII A;  1B75 A;  5HL7 S;  2JIP A;  1DFU P;  1CR5 A;  4FFT A;  4FG4 A;  1PYQ A;  2R7Z A;  2BE5 D;  3PIP S;  2A6H D;  1KQG A;  4JYZ A;  5JVH S;  4L69 A;  1O0C A;  4JJO A;  2E2I A;  1TWF A;  1AW8 B;  1FDO A;  3SUJ A;  1BW4 A;  5EPP A;  1FEU A;  2HCZ X;  4GA5 A;  5FTK A;  5JVG S;  5B6C A;  1G8K A;  1TWH A;  2YUJ A;  4AVR A;  1SFO A;  2E2H A;  1SIW A;  1DMR A;  2BH0 A;  4KO8 A;  3X2I A;  3GTP A;  3KW2 A;  4DMR A;  1YNN D;  4V19 4;  4AON B;  1PQH A;  2R92 A;  1QCS A;  3QQ8 A;  2JA7 A;  4KOD A;  1OA7 A;  1WCM A;  3CQZ A;  5GAE W;  2ENG A;  4AYB A;  1ZJW A;  4WFA S;  3SUL A;  5T5I D;  4U67 S;  1OGY A;  3IR6 A;  3D30 A;  5GM9 A;  1E5V A;  1NXZ A;  2KQA A;  1I50 A;  4ZM7 A;  3DLL S;  1EU1 A;  3GTO A;  4IOC S;  4IOA S;  3HU2 A;  4WFN S;  3X2K A;  2NWA A;  1GTR A;  1V6Z A;  3OUG A;  4P2B A;  1EXD A;  5DM7 S;  2E7Z A;  4D7Z B;  4UY8 8;  2NVY A;  2NAP A;  3X2P A;  1SMY D;  4KDL A;  4NOH A;  3X2H A;  3PLX B;  3GTJ A;  2JIQ A;  3HU1 A;  4H4K A;  1EUQ A;  1Q16 A;  2NVX A;  2VPX A;  1TWG A;  4AAY A;  2WB1 A;  1Y5I A;  1UHE A;  1G8J A;  1S3S A;  2AE0 X;  3GTL A;  5GAH W;  2EEO B;  5GAD W;  4JXZ A;  2O5J D;  3GTM A;  5DYG A;  3CF5 S;  2HZ7 A; 
#chains in the Genus database with same CATH homology
 1PQF A;  2WAQ A;  2Y0S A;  1E18 A;  1VC3 B;  3ML1 A;  4AZD A;  4CS0 A;  1CZ5 A;  3X2N A;  3TM7 B;  2R93 A;  2V3V A;  5FTL A;  3FKI A;  3GTG A;  5GLF A;  4JP7 A;  3DMR A;  3GTQ A;  3M3G A;  3X2O A;  1N10 A;  2VPZ A;  3SUK A;  1L8F A;  2VPY A;  2G6G A;  1WLF A;  1PQE A;  1TMO A;  1AA6 A;  3O5A A;  1ZC1 A;  1PPY A;  2NYA A;  2PIC A;  4CRY G;  3CZB A;  4RV0 A;  5FTN A;  2CW0 D;  2PJJ A;  2PMZ A;  1K83 A;  4FER A;  3TIW A;  2A69 D;  4JS7 A;  5H4U A;  1QDN A;  2G5D A;  5GLY A;  1Y1W A;  2YU9 A;  4KDI A;  4JP6 A;  1R7R A;  1E32 A;  1Y4Z A;  5DYI A;  2JA6 A;  1UHD A;  1YLE A;  3X2M A;  3QQ7 A;  5C18 A;  4GA6 A;  5T5M D;  4KLN A;  1I3Q A;  2C45 A;  2VUM A;  1E61 A;  3IR5 A;  3H0G A;  1TWA A;  3ENG A;  3X2L A;  2V45 A;  5GLX A;  1OA9 A;  1R27 A;  1ZYR D;  4FG2 A;  2PNW A;  5FTJ A;  2A68 D;  2PJH B;  3QC8 A;  3HKZ A;  4QIW A;  2JIR A;  3SUM A;  1WC2 A;  3X2G A;  1YNJ D;  2VPW A;  3CF2 A;  1R9T A;  1IW7 D;  1TWC A;  3QWZ A;  5FTM A;  1PT1 A;  4L48 A;  1CZ4 A;  1Y1V A;  2JIO A;  2IV2 X;  1H5N A;  3HU3 A;  1H0H A;  4AOK B;  2KI8 A;  1BW3 A;  1HD5 A;  4CRZ A;  3GTK A;  1DMS A;  4C2M A;  2B63 A;  2PI8 A;  5C1B A;  3IR7 A;  2JIM A;  2JA5 A;  2GAE A;  2DMR A;  4ENG A;  1FDI A;  1PT0 A;  4JCW A;  2A6E D;  1PYU B;  1E60 A;  1KQF A;  3X2J A;  2JIP A;  1CR5 A;  4FFT A;  4FG4 A;  1PYQ A;  2R7Z A;  2BE5 D;  2A6H D;  1KQG A;  4JJO A;  2E2I A;  1TWF A;  3SUJ A;  1BW4 A;  1AW8 B;  1FDO A;  5EPP A;  2HCZ X;  4GA5 A;  5FTK A;  5B6C A;  1G8K A;  1TWH A;  4AVR A;  2YUJ A;  1SFO A;  2E2H A;  1SIW A;  2BH0 A;  1DMR A;  4KO8 A;  3X2I A;  3GTP A;  4DMR A;  1YNN D;  4AON B;  1PQH A;  2R92 A;  1QCS A;  3QQ8 A;  2JA7 A;  4KOD A;  1OA7 A;  1WCM A;  3CQZ A;  2ENG A;  4AYB A;  3SUL A;  5T5I D;  1OGY A;  3IR6 A;  3D30 A;  5GM9 A;  1E5V A;  2KQA A;  1I50 A;  4ZM7 A;  1EU1 A;  3GTO A;  3HU2 A;  3X2K A;  3OUG A;  2E7Z A;  4D7Z B;  2NVY A;  2NAP A;  3X2P A;  1SMY D;  4KDL A;  3X2H A;  4NOH A;  3PLX B;  3GTJ A;  2JIQ A;  3HU1 A;  1Q16 A;  2NVX A;  2VPX A;  1TWG A;  4AAY A;  2WB1 A;  1UHE A;  1G8J A;  2AE0 X;  1S3S A;  1Y5I A;  3GTL A;  2EEO B;  2O5J D;  3GTM A;  5DYG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2PJJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations