The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
151
|
sequence length |
439
|
structure length |
439
|
Chain Sequence |
SDKTEPRNEVYKDKFKNQYNSWHDTAKSEELVDALEQDPNMVILWAGYAFAKDYKAPRGHMYAVTDVRNTLRTGAPKNAEDGPLPMACWSCKSPDVPRLIEEQGEDGYFKGKWAKGGPEVTNTIGCSDCHEKGSPKLRISRPYVDRALDAIGTPFSKASKQDKESMVCAQCHVEYYFEKKEDKKGFVKFPWDMGVTVDQMEVYYDGIEFSDWTHALSKTPMLKAQHPEYETWKMGIHGKNNVSCVDCHMPKVTSPEGKKFTDHKVGNPFDRFEETCATCHSQTKEFLVGVTNERKAKVKEMKLKAEEQLVKAHFEAAKAWELGATEAEMKPILTDIRHAQWRWDLAIASHGVAAHAPEEALRVLGTSVNKAADARVKLAQLLAKKGLTDPVAIPDISTKAKAQAVLGMDMEKMNAEKEAFKKDMLPKWDAEAKKREATY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Shewanella oneidensis
|
| molecule keywords |
Cytochrome c-552
|
| total genus |
151
|
| structure length |
439
|
| sequence length |
439
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.7.2.2: Nitrite reductase (cytochrome; ammonia-forming). |
| pdb deposition date | 2011-10-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02335 | Cytochrom_C552 | Cytochrome c552 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Flavocytochrome C3; Chain A, domain 2 | Flavocytochrome C3; Chain A | ||
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A, domain 3 |
#chains in the Genus database with same CATH superfamily 2DVL A; 4IV6 A; 3RKH A; 3OWA A; 2WBI A; 1M1R A; 2A1T A; 2J7A A; 4L3Y A; 3D9G A; 4O5M A; 3R7K A; 1SP3 A; 2IX6 A; 2Z1Q A; 3L1T A; 3HWC A; 4W9U A; 4HR3 A; 2E80 A; 4Q5B A; 2YYG A; 5K3H A; 1QDB A; 2OT4 A; 4IRN A; 1D4D A; 1FS8 A; 1EGD A; 3MPJ A; 3GNC A; 3MKH A; 3EOM A; 3D9E A; 4L1F A; 4NXL A; 4U83 A; 1JQI A; 1P2E A; 4L3X A; 4Q17 A; 3M9V A; 4X28 A; 1QJD A; 3LGQ A; 2JIF A; 1Y0P A; 3PFD A; 2FON A; 3X0X A; 4ZXV A; 3TOR A; 3MMO A; 3MDD A; 4X28 C; 1M1P A; 1M64 A; 2C12 A; 4M9A A; 3GQT A; 4JEK A; 2E81 A; 3D9D A; 3MPI A; 3P4T A; 3SF6 A; 2OR0 A; 1SIR A; 1UKW A; 1D4C A; 3BNF A; 3NF4 A; 3FCJ A; 3UBR A; 4XVX A; 2ZAF A; 4N5F A; 2CX9 A; 3EON A; 2B7S A; 1QO8 A; 1IVH A; 3D1I A; 2PG0 A; 2UXW A; 4Q4U A; 2VIG A; 1FS9 A; 2ZO5 A; 1LJ1 A; 3SWO A; 1GU6 A; 2REH A; 1JRY A; 3D9F A; 1FS7 A; 3AFF A; 3UU9 A; 3BNG A; 1Q9I A; 4ZYJ A; 1R2J A; 2EBA A; 5K3I A; 2YYM A; 3LG1 A; 2RFQ A; 4P13 A; 4DOY A; 1EGC A; 1M1Q A; 1WS9 A; 1JRZ A; 1UDY A; 2JBR A; 1RX0 A; 2YYI A; 3FO3 A; 1W07 A; 2VR0 A; 2DDH A; 3MXL A; 3SCE A; 2JBS A; 2K3V A; 4Q1O A; 2YYJ A; 1E39 A; 3MDE A; 3AFE A; 3II9 A; 3F29 A; 3TTB A; 2YYK A; 3BNJ A; 1JNI A; 4Q5C A; 2R0N A; 3X0Y A; 2RF7 A; 2IX5 A; 3OIB A; 5K3G A; 4L38 A; 1P2H A; 4OO2 A; 2D29 A; 1KSU A; 1JRX A; 2C0U A; 1KSS A; 2JBT A; 4L3Z A; 1SIQ A; 4KTO A; 3GM6 A; 4RM7 A; 1IS2 A; 1FT5 A; 5K3J A; 1FT6 A; 3B96 A; 1U8V A; 3S7W A; 1BUC A; 1EGE A; 1BVB A; 2RDZ A; 4Q0T A; 4KCF A; 2B7R A; 3BNH A; 4G5E A; 3OWM A; 1OAH A; 2R0M A; 2YYL A; 1T9G A; 1D4E A; 3D6B A; 4WJY A; 3SXQ A; #chains in the Genus database with same CATH topology 3OWA A; 2WBI A; 1M1R A; 2AO2 A; 4L3Y A; 4JIZ A; 4O5M A; 4E00 A; 4HKR A; 1SP3 A; 1XFV A; 4W9U A; 4J1V A; 3GNC A; 5GJV E; 3VKH A; 2BTZ A; 1M1P A; 4AKH A; 2C12 A; 4JEK A; 4AKG A; 2HJN A; 3D2R A; 1RP3 A; 1Y0V A; 2B7S A; 1X90 A; 1QO8 A; 1FS9 A; 3TZ0 A; 2REH A; 2LFW A; 2EC5 A; 4MPE A; 4H85 A; 3BNG A; 2GBB A; 4G97 A; 5K3I A; 2R03 A; 3CE2 A; 4DOY A; 1K90 A; 1UDY A; 4KS9 A; 1W07 A; 3MXL A; 3SCE A; 2JBS A; 4Q1O A; 1E39 A; 3AFE A; 3F29 A; 3TTB A; 1JNI A; 1X91 A; 5BRM A; 4Q5C A; 3X0Y A; 1GKX A; 2ZDY A; 4KSF A; 1Y8P A; 1KSU A; 1JRX A; 1KSS A; 2JBT A; 4L3Z A; 3CRL A; 3S7W A; 2FP2 A; 4HKS A; 4KCF A; 4Q0T A; 2OEV A; 4G5E A; 1T9G A; 2XQR B; 5B5V A; 5M4K A; 4LQQ B; 1Y8N A; 4FZ4 A; 3TZ4 A; 4HR3 A; 4E02 A; 5J71 A; 5J6A A; 4LQS B; 2FON A; 4V26 A; 3MMO A; 3MDD A; 4X28 C; 1M64 A; 3MPI A; 2OR0 A; 1UKW A; 3BNF A; 5GJW E; 3UBR A; 2ZAF A; 2CX9 A; 4AKI A; 1SC5 A; 3VKG A; 4MP2 A; 3AFF A; 1Q9I A; 3N0R A; 2EBA A; 4FF4 A; 1M1Q A; 2EBF X; 2JBR A; 1RX0 A; 2YYI A; 4P79 A; 2K3V A; 3BNJ A; 2FP1 A; 3OIB A; 5K3G A; 4H81 A; 4MPC A; 1SIQ A; 4RM7 A; 5BRK A; 1XFW A; 5K3J A; 1PK0 A; 3TZ2 A; 2PNR A; 2B7R A; 2CJ5 A; 1OAH A; 2R0M A; 3D6B A; 1P2H A; 3SXQ A; 2DVL A; 4IV6 A; 2R02 A; 1R3B A; 2Q8G A; 4FF2 A; 2J7A A; 2E0A A; 3D9G A; 2Q8I A; 2Z1Q A; 3L1T A; 3HWC A; 2XS1 A; 2AZE A; 4Q5B A; 2YYG A; 5K3H A; 1QDB A; 4FF1 A; 4IRN A; 1D4D A; 1FS8 A; 3MPJ A; 3D9E A; 4NXL A; 4U83 A; 1JQI A; 1P2E A; 1S26 A; 4Q17 A; 3M9V A; 1LVC A; 1RJ1 A; 1GJV A; 1Y0P A; 3PFD A; 4ZXV A; 3TOR A; 3C3L A; 3VAD A; 4M9A A; 5M4N A; 2ZDX A; 2OJQ A; 3SF6 A; 4JIO A; 2PO4 A; 1SIR A; 1D4C A; 2CJ6 A; 4N5F A; 3EON A; 3X29 A; 1XG2 B; 1IVH A; 2PG0 A; 4Q4U A; 2EBH X; 2VIG A; 2ZO5 A; 1LJ1 A; 2BU2 A; 3SWO A; 2XS8 A; 1GU6 A; 1JRY A; 5B5W A; 3D9F A; 1FS7 A; 4ZYJ A; 1RJ4 A; 2YYM A; 2R05 A; 1EGC A; 1WS9 A; 1JRZ A; 3FO3 A; 2CJ7 A; 2VR0 A; 2DDH A; 2YYJ A; 3II9 A; 2R0N A; 4L38 A; 4FF3 A; 3Q22 A; 2OEX A; 2D29 A; 3C46 A; 1IS2 A; 1FT5 A; 4MP7 A; 5M4P A; 3B96 A; 1K8T A; 3FCJ A; 3TZ5 A; 3RKH A; 2A1T A; 2F6L A; 3R7K A; 1XFZ A; 2IX6 A; 2BU5 A; 1Y8O A; 2BU8 A; 2E80 A; 2CJ4 A; 2YGW A; 2OT4 A; 1EGD A; 3MKH A; 3EOM A; 4L1F A; 4L3X A; 1SK6 A; 4X28 A; 1QJD A; 3LGQ A; 2JIF A; 2QR4 A; 4QIC A; 3X0X A; 4AI6 A; 3GQT A; 2E81 A; 3Q0A A; 3D9D A; 3C2P A; 3P4T A; 4MPN A; 3NF4 A; 4XVX A; 1JM6 A; 2CJ8 A; 1GKZ A; 3D1I A; 2UXW A; 3KML A; 5B6B A; 4E01 A; 1XFU A; 5M4M A; 4V25 A; 3UU9 A; 1K93 A; 1R2J A; 2VF1 A; 4H7Q A; 1XFY A; 2CZS A; 3LG1 A; 2RFQ A; 4P13 A; 1X8Z A; 2Q8H A; 4KSA A; 3MDE A; 2YYK A; 2BU6 A; 1XFX A; 2RF7 A; 2IX5 A; 4OO2 A; 2ZKJ A; 2C0U A; 3CRK A; 4KTO A; 3GM6 A; 2Q8F A; 1FT6 A; 1U8V A; 4DZY A; 3Q24 A; 1BUC A; 1PI1 A; 1EGE A; 1BVB A; 2RDZ A; 4F0X A; 3BNH A; 3OWM A; 2YYL A; 2BU7 A; 1D4E A; 3Q23 A; 4WJY A; #chains in the Genus database with same CATH homology 2DVL A; 4IV6 A; 3RKH A; 3OWA A; 2WBI A; 1M1R A; 2A1T A; 2J7A A; 4L3Y A; 3D9G A; 4O5M A; 3R7K A; 1SP3 A; 2IX6 A; 2Z1Q A; 3L1T A; 3HWC A; 4W9U A; 4HR3 A; 2E80 A; 4Q5B A; 2YYG A; 5K3H A; 1QDB A; 2OT4 A; 4IRN A; 1D4D A; 1FS8 A; 1EGD A; 3MPJ A; 3GNC A; 3MKH A; 3EOM A; 3D9E A; 4L1F A; 4NXL A; 4U83 A; 1JQI A; 1P2E A; 4L3X A; 4Q17 A; 3M9V A; 4X28 A; 1QJD A; 3LGQ A; 2JIF A; 1Y0P A; 3PFD A; 2FON A; 3X0X A; 4ZXV A; 3TOR A; 3MMO A; 3MDD A; 4X28 C; 1M1P A; 1M64 A; 2C12 A; 4M9A A; 3GQT A; 4JEK A; 2E81 A; 3D9D A; 3MPI A; 3P4T A; 3SF6 A; 2OR0 A; 1SIR A; 1UKW A; 1D4C A; 3BNF A; 3NF4 A; 3FCJ A; 3UBR A; 4XVX A; 2ZAF A; 4N5F A; 2CX9 A; 3EON A; 2B7S A; 1QO8 A; 1IVH A; 3D1I A; 2PG0 A; 2UXW A; 4Q4U A; 2VIG A; 1FS9 A; 2ZO5 A; 1LJ1 A; 3SWO A; 1GU6 A; 2REH A; 1JRY A; 3D9F A; 1FS7 A; 3AFF A; 3UU9 A; 3BNG A; 1Q9I A; 4ZYJ A; 1R2J A; 2EBA A; 5K3I A; 2YYM A; 3LG1 A; 2RFQ A; 4P13 A; 4DOY A; 1EGC A; 1M1Q A; 1WS9 A; 1JRZ A; 1UDY A; 2JBR A; 1RX0 A; 2YYI A; 3FO3 A; 1W07 A; 2VR0 A; 2DDH A; 3MXL A; 3SCE A; 2JBS A; 2K3V A; 4Q1O A; 2YYJ A; 1E39 A; 3MDE A; 3AFE A; 3II9 A; 3F29 A; 3TTB A; 2YYK A; 3BNJ A; 1JNI A; 4Q5C A; 2R0N A; 3X0Y A; 2RF7 A; 2IX5 A; 3OIB A; 5K3G A; 4L38 A; 1P2H A; 4OO2 A; 2D29 A; 1KSU A; 1JRX A; 2C0U A; 1KSS A; 2JBT A; 4L3Z A; 1SIQ A; 4KTO A; 3GM6 A; 4RM7 A; 1IS2 A; 1FT5 A; 5K3J A; 1FT6 A; 3B96 A; 1U8V A; 3S7W A; 1BUC A; 1EGE A; 1BVB A; 2RDZ A; 4Q0T A; 4KCF A; 2B7R A; 3BNH A; 4G5E A; 3OWM A; 1OAH A; 2R0M A; 2YYL A; 1T9G A; 1D4E A; 3D6B A; 4WJY A; 3SXQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
