1DCNA

Inactive mutant h162n of delta 2 crystallin with bound argininosuccinate
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
433
structure length
424
Chain Sequence
DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINNLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTTQIEQLRELMKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an inactive duck delta II crystallin mutant with bound argininosuccinate.
pubmed doi rcsb
molecule tags Eye lens protein
source organism Anas platyrhynchos
molecule keywords DELTA 2 CRYSTALLIN
total genus 154
structure length 424
sequence length 433
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 1998-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1dcnA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1dcnA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1dcnA02
4BAAA 1C3UA 2HVGA 2PFMA 4C6GA 1DCNA 1HY1A 1GK2A 2O7DA 4EFCA 2O78A 2NYFA 5EYVA 2FUSA 3OCEA 2O7EA 3GZHA 2O7FA 2X75A 1FUPA 4CQ5A 4ADMA 4V2RA 4APAA 1GK3A 1JSWA 2PTSA 4MX2A 1YISA 1YFMA 3RD8A 4V2QA 1YFEA 1Y2MA 1C3CA 3C8TA 1VDKA 4C5SA 2O6YA 3BHGA 2E9FA 4NSLA 1T6PA 1TJVA 3TV2A 1Q5NA 2QVEA 4C5UA 1GKJA 3R6YA 5F92A 3R6VA 1U16A 3QBPA 2O7BA 1TJ7A 3KDYA 1TJUA 1RE5A 4FFXA 2VD6A 1EB4A 2QGAB 4NLEA 1HY0A 1I0AA 2RJRA 3GTDA 5HW2A 1W27A 1FUOA 2YIIA 2J91A 1K62A 1KQ7A 3UNVA 3KDZA 4BABA 1T6JA 4HGVA 1XWOA 1DOFA 1FURA 2OHYA 1B8FA 3OCFA 5D6BA 2RJSA 1FUQA 3RRPA 1AUWA 3NZ4A 4FLCA 3NO9A 1U15A 2PTRA 4APBA 4EEIA 4C5RA 3R6QA 1TJWA 3E04A 1GKMA 4ADLA 1K7WA 3CZOA 1J3UA 2PTQA 5EYTA 2NYNA 5F91A
chains in the Genus database with same CATH superfamily
4A15A 4BAAA 1C3UA 2HVGA 2PFMA 4C6GA 1Z4MA 1DCNA 1HY1A 2RCNA 1GK2A 2JARA 1T9HA 2I7DA 2O7DA 4EFCA 2FENA 2O78A 2NYFA 5EYVA 1MH9A 2FUSA 3OCEA 2O7EA 3GZHA 2O7FA 2X75A 1FUPA 1XMCA 2VL7A 5H8WA 4CQ5A 4ADMA 4V2RA 4APAA 4IQJM 1GK3A 2D28C 1XLYA 1JSWA 4YIHA 2PTSA 4MX2A 1YISA 1Z4QA 4L57A 1YFMA 1Z4IA 3RD8A 4V2QA 1YFEA 1Y2MA 1C3CA 1IW7D 3C8TA 1VDKA 4C5SA 1U0LA 2O6YA 3BHGA 2E9FA 1Z4KA 4NSLA 1T6PA 1TJVA 3TV2A 1Q5NA 4MUMA 4MWOA 2QVEA 4C5UA 1GKJA 3R6YA 5F92A 3R6VA 1U16A 3QBPA 2O7BA 1TJ7A 3KDYA 1TJUA 1RE5A 4FFXA 2VD6A 1EB4A 1XMDA 2QGAB 4NLEA 1HY0A 2D27A 2RJRA 5M0IA 3GTDA 5HW2A 3U19A 1FUOA 1W27A 2YIIA 1Q91A 2J91A 4NFLA 2FELA 2VSFA 1K62A 1KQ7A 3UNVA 2JAOA 3F4RA 4L6AA 3CRW1 3KDZA 1Q92A 3CRVA 4BABA 1T6JA 4HGVA 2YV5A 4YIKA 1Z4LA 1XWOA 1DOFA 1XL8A 1FURA 2OHYA 1B8FA 3OCFA 5D6BA 3BWVA 1Z4JA 2JAWA 2RJSA 3F4TA 4L6CA 1FUQA 3RRPA 1AUWA 5F91A 3NZ4A 4FLCA 3NO9A 1U15A 2PTRA 4APBA 4EEIA 4C5RA 3F4SA 3R6QA 1TJWA 3E04A 1GKMA 1XL7A 4E88A 4ADLA 4WNLA 1K7WA 3CI0K 1J3UA 3CZOA 2PTQA 5M0JA 5EYTA 3U13A 1Z4PX 2NYNA 2JAUA 1I0AA
chains in the Genus database with same CATH topology
4BAAA 1C3UA 2HVGA 2PFMA 4C6GA 1DCNA 1HY1A 1GK2A 2O7DA 4EFCA 2O78A 2NYFA 5EYVA 2FUSA 3OCEA 2O7EA 3GZHA 2O7FA 2X75A 1FUPA 4CQ5A 4ADMA 4V2RA 4APAA 1GK3A 1JSWA 2PTSA 4MX2A 1YISA 1YFMA 3RD8A 4V2QA 1YFEA 1Y2MA 1C3CA 3C8TA 1VDKA 4C5SA 2O6YA 3BHGA 2E9FA 4NSLA 1T6PA 1TJVA 3TV2A 1Q5NA 2QVEA 4C5UA 1GKJA 3R6YA 5F92A 3R6VA 1U16A 3QBPA 2O7BA 1TJ7A 3KDYA 1TJUA 1RE5A 4FFXA 2VD6A 1EB4A 2QGAB 4NLEA 1HY0A 1I0AA 2RJRA 3GTDA 5HW2A 1W27A 1FUOA 2YIIA 2J91A 1K62A 1KQ7A 3UNVA 3KDZA 4BABA 1T6JA 4HGVA 1XWOA 1DOFA 1FURA 2OHYA 1B8FA 3OCFA 5D6BA 2RJSA 1FUQA 3RRPA 1AUWA 3NZ4A 4FLCA 3NO9A 1U15A 2PTRA 4APBA 4EEIA 4C5RA 3R6QA 1TJWA 3E04A 1GKMA 4ADLA 1K7WA 3CZOA 1J3UA 2PTQA 5EYTA 2NYNA 5F91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BAA A;  1C3U A;  2HVG A;  2PFM A;  4C6G A;  1DCN A;  1HY1 A;  1GK2 A;  2O7D A;  4EFC A;  2O78 A;  2NYF A;  5EYV A;  2FUS A;  3OCE A;  2O7E A;  3GZH A;  2O7F A;  2X75 A;  1FUP A;  4CQ5 A;  4ADM A;  4V2R A;  4APA A;  1GK3 A;  1JSW A;  2PTS A;  4MX2 A;  1YIS A;  1YFM A;  3RD8 A;  4V2Q A;  1YFE A;  1Y2M A;  1C3C A;  3C8T A;  1VDK A;  4C5S A;  2O6Y A;  3BHG A;  2E9F A;  4NSL A;  1T6P A;  1TJV A;  3TV2 A;  1Q5N A;  2QVE A;  4C5U A;  1GKJ A;  3R6Y A;  5F92 A;  3R6V A;  1U16 A;  3QBP A;  2O7B A;  1TJ7 A;  3KDY A;  1TJU A;  1RE5 A;  4FFX A;  2VD6 A;  1EB4 A;  2QGA B;  4NLE A;  1HY0 A;  1I0A A;  2RJR A;  3GTD A;  5HW2 A;  1W27 A;  1FUO A;  2YII A;  2J91 A;  1K62 A;  1KQ7 A;  3UNV A;  3KDZ A;  4BAB A;  1T6J A;  4HGV A;  1XWO A;  1DOF A;  1FUR A;  2OHY A;  1B8F A;  3OCF A;  5D6B A;  2RJS A;  1FUQ A;  3RRP A;  1AUW A;  3NZ4 A;  4FLC A;  3NO9 A;  1U15 A;  2PTR A;  4APB A;  4EEI A;  4C5R A;  3R6Q A;  1TJW A;  3E04 A;  1GKM A;  4ADL A;  1K7W A;  3CZO A;  1J3U A;  2PTQ A;  5EYT A;  2NYN A;  5F91 A; 
#chains in the Genus database with same CATH topology
 4A15 A;  4BAA A;  1C3U A;  2HVG A;  2PFM A;  4C6G A;  1Z4M A;  1DCN A;  1HY1 A;  2RCN A;  1GK2 A;  2JAR A;  1T9H A;  2I7D A;  2O7D A;  4EFC A;  2FEN A;  2O78 A;  2NYF A;  5EYV A;  1MH9 A;  2FUS A;  3OCE A;  2O7E A;  3GZH A;  2O7F A;  2X75 A;  1FUP A;  1XMC A;  2VL7 A;  5H8W A;  4CQ5 A;  4ADM A;  4V2R A;  4APA A;  4IQJ M;  1GK3 A;  2D28 C;  1XLY A;  1JSW A;  4YIH A;  2PTS A;  4MX2 A;  1YIS A;  1Z4Q A;  4L57 A;  1YFM A;  1Z4I A;  3RD8 A;  4V2Q A;  1YFE A;  1Y2M A;  1C3C A;  1IW7 D;  3C8T A;  1VDK A;  4C5S A;  1U0L A;  2O6Y A;  3BHG A;  2E9F A;  1Z4K A;  4NSL A;  1T6P A;  1TJV A;  3TV2 A;  1Q5N A;  4MUM A;  4MWO A;  2QVE A;  4C5U A;  1GKJ A;  3R6Y A;  5F92 A;  3R6V A;  1U16 A;  3QBP A;  2O7B A;  1TJ7 A;  3KDY A;  1TJU A;  1RE5 A;  4FFX A;  2VD6 A;  1EB4 A;  1XMD A;  2QGA B;  4NLE A;  1HY0 A;  2D27 A;  2RJR A;  5M0I A;  3GTD A;  5HW2 A;  3U19 A;  1FUO A;  1W27 A;  2YII A;  1Q91 A;  2J91 A;  4NFL A;  2FEL A;  2VSF A;  1K62 A;  1KQ7 A;  3UNV A;  2JAO A;  3F4R A;  4L6A A;  3CRW 1;  3KDZ A;  1Q92 A;  3CRV A;  4BAB A;  1T6J A;  4HGV A;  2YV5 A;  4YIK A;  1Z4L A;  1XWO A;  1DOF A;  1XL8 A;  1FUR A;  2OHY A;  1B8F A;  3OCF A;  5D6B A;  3BWV A;  1Z4J A;  2JAW A;  2RJS A;  3F4T A;  4L6C A;  1FUQ A;  3RRP A;  1AUW A;  5F91 A;  3NZ4 A;  4FLC A;  3NO9 A;  1U15 A;  2PTR A;  4APB A;  4EEI A;  4C5R A;  3F4S A;  3R6Q A;  1TJW A;  3E04 A;  1GKM A;  1XL7 A;  4E88 A;  4ADL A;  4WNL A;  1K7W A;  3CI0 K;  1J3U A;  3CZO A;  2PTQ A;  5M0J A;  5EYT A;  3U13 A;  1Z4P X;  2NYN A;  2JAU A;  1I0A A; 
#chains in the Genus database with same CATH homology
 4BAA A;  1C3U A;  2HVG A;  2PFM A;  4C6G A;  1DCN A;  1HY1 A;  1GK2 A;  2O7D A;  4EFC A;  2O78 A;  2NYF A;  5EYV A;  2FUS A;  3OCE A;  2O7E A;  3GZH A;  2O7F A;  2X75 A;  1FUP A;  4CQ5 A;  4ADM A;  4V2R A;  4APA A;  1GK3 A;  1JSW A;  2PTS A;  4MX2 A;  1YIS A;  1YFM A;  3RD8 A;  4V2Q A;  1YFE A;  1Y2M A;  1C3C A;  3C8T A;  1VDK A;  4C5S A;  2O6Y A;  3BHG A;  2E9F A;  4NSL A;  1T6P A;  1TJV A;  3TV2 A;  1Q5N A;  2QVE A;  4C5U A;  1GKJ A;  3R6Y A;  5F92 A;  3R6V A;  1U16 A;  3QBP A;  2O7B A;  1TJ7 A;  3KDY A;  1TJU A;  1RE5 A;  4FFX A;  2VD6 A;  1EB4 A;  2QGA B;  4NLE A;  1HY0 A;  1I0A A;  2RJR A;  3GTD A;  5HW2 A;  1W27 A;  1FUO A;  2YII A;  2J91 A;  1K62 A;  1KQ7 A;  3UNV A;  3KDZ A;  4BAB A;  1T6J A;  4HGV A;  1XWO A;  1DOF A;  1FUR A;  2OHY A;  1B8F A;  3OCF A;  5D6B A;  2RJS A;  1FUQ A;  3RRP A;  1AUW A;  3NZ4 A;  4FLC A;  3NO9 A;  1U15 A;  2PTR A;  4APB A;  4EEI A;  4C5R A;  3R6Q A;  1TJW A;  3E04 A;  1GKM A;  4ADL A;  1K7W A;  3CZO A;  1J3U A;  2PTQ A;  5EYT A;  2NYN A;  5F91 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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