1DCNA

Inactive mutant h162n of delta 2 crystallin with bound argininosuccinate
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
433
structure length
424
Chain Sequence
DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINNLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTTQIEQLRELMKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an inactive duck delta II crystallin mutant with bound argininosuccinate.
pubmed doi rcsb
molecule tags Eye lens protein
source organism Anas platyrhynchos
molecule keywords DELTA 2 CRYSTALLIN
total genus 154
structure length 424
sequence length 433
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 1998-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1dcnA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1dcnA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1dcnA02
1HY1A 1KQ7A 3NO9A 4EFCA 4V2QA 1I0AA 1HY0A 1C3UA 1Q5NA 2OHYA 4ADLA 1K7WA 3C8TA 5HW2A 2J91A 4BABA 1J3UA 2O7BA 1GK2A 3BHGA 4EEIA 1C3CA 4C5UA 1YFEA 1K62A 3RRPA 2O7DA 2NYNA 1DOFA 4NSLA 3QBPA 4BAAA 2NYFA 5F92A 2PFMA 2PTQA 1DCNA 5EYTA 1JSWA 1EB4A 2E9FA 4HGVA 4C5SA 4APAA 3GTDA 1GK3A 1U16A 2VD6A 1XWOA 2O7EA 4V2RA 3E04A 4C6GA 1T6PA 1FURA 1RE5A 2HVGA 3OCFA 1YISA 1FUOA 1T6JA 1FUPA 3OCEA 1Y2MA 1TJWA 1TJUA 2O78A 4MX2A 3TV2A 2O7FA 2FUSA 5F91A 1TJ7A 4NLEA 1FUQA 3R6YA 3R6QA 1AUWA 2QGAB 3CZOA 3KDZA 3GZHA 2PTRA 2O6YA 2X75A 3NZ4A 4CQ5A 1VDKA 2PTSA 4ADMA 4C5RA 1GKMA 5EYVA 2RJSA 1B8FA 2QVEA 3UNVA 3R6VA 4FFXA 1TJVA 2YIIA 1YFMA 4FLCA 5D6BA 1U15A 4APBA 1W27A 2RJRA 3RD8A 3KDYA 1GKJA
chains in the Genus database with same CATH superfamily
1HY1A 1KQ7A 4A15A 3NO9A 4EFCA 4V2QA 1I0AA 4L6CA 1HY0A 1C3UA 1Q5NA 2OHYA 2RCNA 5M0JA 4ADLA 1K7WA 3C8TA 5HW2A 2J91A 4IQJM 4BABA 1J3UA 2O7BA 1GK2A 3BHGA 4EEIA 1IW7D 1C3CA 3F4TA 4C5UA 1YFEA 1XL7A 3CRVA 1K62A 4L6AA 1XMCA 5H8WA 3RRPA 2VSFA 2O7DA 2NYNA 1DOFA 4NSLA 3QBPA 4BAAA 2NYFA 5F92A 2PFMA 2PTQA 1Z4LA 1DCNA 5EYTA 1JSWA 1U0LA 1EB4A 1T9HA 2E9FA 1Q91A 4HGVA 4C5SA 4APAA 3U19A 2YV5A 3GTDA 1Z4QA 2JAUA 1U16A 1GK3A 2VD6A 1XWOA 2O7EA 4V2RA 3F4RA 2JARA 4E88A 3E04A 3CRW1 4C6GA 1T6PA 1FURA 2FELA 1RE5A 2HVGA 3OCFA 2FENA 1YISA 1FUOA 1T6JA 4L57A 3BWVA 1FUPA 3OCEA 1Y2MA 1TJWA 1TJUA 2O78A 4MX2A 1Z4JA 3TV2A 2O7FA 1Q92A 2VL7A 2FUSA 5F91A 1TJ7A 4YIKA 4YIHA 4NLEA 1FUQA 3R6YA 1Z4KA 3R6QA 1XLYA 1Z4MA 1MH9A 1AUWA 2QGAB 3CZOA 3KDZA 3GZHA 2PTRA 2O6YA 2D28C 3CI0K 4NFLA 2X75A 1Z4IA 3NZ4A 4CQ5A 4MWOA 2D27A 1VDKA 1XMDA 2PTSA 4ADMA 4C5RA 1GKMA 5EYVA 2RJSA 1B8FA 2QVEA 3F4SA 5M0IA 3UNVA 3R6VA 4WNLA 4FFXA 1TJVA 2JAOA 2YIIA 1YFMA 4MUMA 4FLCA 5D6BA 1U15A 3U13A 4APBA 1W27A 2RJRA 3RD8A 2JAWA 3KDYA 1GKJA 1Z4PX 1XL8A 2I7DA
chains in the Genus database with same CATH topology
1HY1A 1KQ7A 3NO9A 4EFCA 4V2QA 1I0AA 1HY0A 1C3UA 1Q5NA 2OHYA 4ADLA 1K7WA 3C8TA 5HW2A 2J91A 4BABA 1J3UA 2O7BA 1GK2A 3BHGA 4EEIA 1C3CA 4C5UA 1YFEA 1K62A 3RRPA 2O7DA 2NYNA 1DOFA 4NSLA 3QBPA 4BAAA 2NYFA 5F92A 2PFMA 2PTQA 1DCNA 5EYTA 1JSWA 1EB4A 2E9FA 4HGVA 4C5SA 4APAA 3GTDA 1GK3A 1U16A 2VD6A 1XWOA 2O7EA 4V2RA 3E04A 4C6GA 1T6PA 1FURA 1RE5A 2HVGA 3OCFA 1YISA 1FUOA 1T6JA 1FUPA 3OCEA 1Y2MA 1TJWA 1TJUA 2O78A 4MX2A 3TV2A 2O7FA 2FUSA 5F91A 1TJ7A 4NLEA 1FUQA 3R6YA 3R6QA 1AUWA 2QGAB 3CZOA 3KDZA 3GZHA 2PTRA 2O6YA 2X75A 3NZ4A 4CQ5A 1VDKA 2PTSA 4ADMA 4C5RA 1GKMA 5EYVA 2RJSA 1B8FA 2QVEA 3UNVA 3R6VA 4FFXA 1TJVA 2YIIA 1YFMA 4FLCA 5D6BA 1U15A 4APBA 1W27A 2RJRA 3RD8A 3KDYA 1GKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HY1 A;  1KQ7 A;  3NO9 A;  4EFC A;  4V2Q A;  1I0A A;  1HY0 A;  1C3U A;  1Q5N A;  2OHY A;  4ADL A;  1K7W A;  3C8T A;  5HW2 A;  2J91 A;  4BAB A;  1J3U A;  2O7B A;  1GK2 A;  3BHG A;  4EEI A;  1C3C A;  4C5U A;  1YFE A;  1K62 A;  3RRP A;  2O7D A;  2NYN A;  1DOF A;  4NSL A;  3QBP A;  4BAA A;  2NYF A;  5F92 A;  2PFM A;  2PTQ A;  1DCN A;  5EYT A;  1JSW A;  1EB4 A;  2E9F A;  4HGV A;  4C5S A;  4APA A;  3GTD A;  1GK3 A;  1U16 A;  2VD6 A;  1XWO A;  2O7E A;  4V2R A;  3E04 A;  4C6G A;  1T6P A;  1FUR A;  1RE5 A;  2HVG A;  3OCF A;  1YIS A;  1FUO A;  1T6J A;  1FUP A;  3OCE A;  1Y2M A;  1TJW A;  1TJU A;  2O78 A;  4MX2 A;  3TV2 A;  2O7F A;  2FUS A;  5F91 A;  1TJ7 A;  4NLE A;  1FUQ A;  3R6Y A;  3R6Q A;  1AUW A;  2QGA B;  3CZO A;  3KDZ A;  3GZH A;  2PTR A;  2O6Y A;  2X75 A;  3NZ4 A;  4CQ5 A;  1VDK A;  2PTS A;  4ADM A;  4C5R A;  1GKM A;  5EYV A;  2RJS A;  1B8F A;  2QVE A;  3UNV A;  3R6V A;  4FFX A;  1TJV A;  2YII A;  1YFM A;  4FLC A;  5D6B A;  1U15 A;  4APB A;  1W27 A;  2RJR A;  3RD8 A;  3KDY A;  1GKJ A; 
#chains in the Genus database with same CATH topology
 1HY1 A;  1KQ7 A;  4A15 A;  3NO9 A;  4EFC A;  4V2Q A;  1I0A A;  4L6C A;  1HY0 A;  1C3U A;  1Q5N A;  2OHY A;  2RCN A;  5M0J A;  4ADL A;  1K7W A;  3C8T A;  5HW2 A;  2J91 A;  4IQJ M;  4BAB A;  1J3U A;  2O7B A;  1GK2 A;  3BHG A;  4EEI A;  1IW7 D;  1C3C A;  3F4T A;  4C5U A;  1YFE A;  1XL7 A;  3CRV A;  1K62 A;  4L6A A;  1XMC A;  5H8W A;  3RRP A;  2VSF A;  2O7D A;  2NYN A;  1DOF A;  4NSL A;  3QBP A;  4BAA A;  2NYF A;  5F92 A;  2PFM A;  2PTQ A;  1Z4L A;  1DCN A;  5EYT A;  1JSW A;  1U0L A;  1EB4 A;  1T9H A;  2E9F A;  1Q91 A;  4HGV A;  4C5S A;  4APA A;  3U19 A;  2YV5 A;  3GTD A;  1Z4Q A;  2JAU A;  1U16 A;  1GK3 A;  2VD6 A;  1XWO A;  2O7E A;  4V2R A;  3F4R A;  2JAR A;  4E88 A;  3E04 A;  3CRW 1;  4C6G A;  1T6P A;  1FUR A;  2FEL A;  1RE5 A;  2HVG A;  3OCF A;  2FEN A;  1YIS A;  1FUO A;  1T6J A;  4L57 A;  3BWV A;  1FUP A;  3OCE A;  1Y2M A;  1TJW A;  1TJU A;  2O78 A;  4MX2 A;  1Z4J A;  3TV2 A;  2O7F A;  1Q92 A;  2VL7 A;  2FUS A;  5F91 A;  1TJ7 A;  4YIK A;  4YIH A;  4NLE A;  1FUQ A;  3R6Y A;  1Z4K A;  3R6Q A;  1XLY A;  1Z4M A;  1MH9 A;  1AUW A;  2QGA B;  3CZO A;  3KDZ A;  3GZH A;  2PTR A;  2O6Y A;  2D28 C;  3CI0 K;  4NFL A;  2X75 A;  1Z4I A;  3NZ4 A;  4CQ5 A;  4MWO A;  2D27 A;  1VDK A;  1XMD A;  2PTS A;  4ADM A;  4C5R A;  1GKM A;  5EYV A;  2RJS A;  1B8F A;  2QVE A;  3F4S A;  5M0I A;  3UNV A;  3R6V A;  4WNL A;  4FFX A;  1TJV A;  2JAO A;  2YII A;  1YFM A;  4MUM A;  4FLC A;  5D6B A;  1U15 A;  3U13 A;  4APB A;  1W27 A;  2RJR A;  3RD8 A;  2JAW A;  3KDY A;  1GKJ A;  1Z4P X;  1XL8 A;  2I7D A; 
#chains in the Genus database with same CATH homology
 1HY1 A;  1KQ7 A;  3NO9 A;  4EFC A;  4V2Q A;  1I0A A;  1HY0 A;  1C3U A;  1Q5N A;  2OHY A;  4ADL A;  1K7W A;  3C8T A;  5HW2 A;  2J91 A;  4BAB A;  1J3U A;  2O7B A;  1GK2 A;  3BHG A;  4EEI A;  1C3C A;  4C5U A;  1YFE A;  1K62 A;  3RRP A;  2O7D A;  2NYN A;  1DOF A;  4NSL A;  3QBP A;  4BAA A;  2NYF A;  5F92 A;  2PFM A;  2PTQ A;  1DCN A;  5EYT A;  1JSW A;  1EB4 A;  2E9F A;  4HGV A;  4C5S A;  4APA A;  3GTD A;  1GK3 A;  1U16 A;  2VD6 A;  1XWO A;  2O7E A;  4V2R A;  3E04 A;  4C6G A;  1T6P A;  1FUR A;  1RE5 A;  2HVG A;  3OCF A;  1YIS A;  1FUO A;  1T6J A;  1FUP A;  3OCE A;  1Y2M A;  1TJW A;  1TJU A;  2O78 A;  4MX2 A;  3TV2 A;  2O7F A;  2FUS A;  5F91 A;  1TJ7 A;  4NLE A;  1FUQ A;  3R6Y A;  3R6Q A;  1AUW A;  2QGA B;  3CZO A;  3KDZ A;  3GZH A;  2PTR A;  2O6Y A;  2X75 A;  3NZ4 A;  4CQ5 A;  1VDK A;  2PTS A;  4ADM A;  4C5R A;  1GKM A;  5EYV A;  2RJS A;  1B8F A;  2QVE A;  3UNV A;  3R6V A;  4FFX A;  1TJV A;  2YII A;  1YFM A;  4FLC A;  5D6B A;  1U15 A;  4APB A;  1W27 A;  2RJR A;  3RD8 A;  3KDY A;  1GKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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