1FEUA

Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
185
structure length
185
Chain Sequence
MEYRLKAYYREGEKPSALRRAGKLPGLMYNRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins.
pubmed doi rcsb
molecule tags Ribosome
source organism Thermus thermophilus
molecule keywords 19 NT FRAGMENT OF 5S RRNA
total genus 39
structure length 185
sequence length 185
chains with identical sequence D
ec nomenclature
pdb deposition date 2000-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
A PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1feuA01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 1feuA02
5GADW 1ZJWA 1QRSA 1EUYA 1QRUA 5JVGS 3J7ZV 1QRTA 5HL7S 1EUQA 5DM6S 1DFUP 5IZNA 4WCES 2ZJPS 5GAGW 1O0CA 5DM7S 1FEUA 4IO9S 1D6KA 1B75A 5BNZA 4IOCS 2HZ7A 1GTSA 5JVHS 3AIIA 4P2BA 4WFBS 3DLLS 2ZJQS 4JYZA 3CF5S 5GAHW 2ZJRS 4UY88 3PIPS 1O0BA 1EXDA 4WFNS 4U67S 4WFAS 2RD2A 5GAEW 4JXZA 1GTRA 3PIOS 4WF9S 1NYLA 4JXXA 2RE8A 4IOAS 4H3SA 1QTQA
chains in the Genus database with same CATH superfamily
2VUMC 2NVTC 5GADW 1QRSA 5IYCC 1UDXA 4Q4ZA 3S17C 5HL7S 3GTGC 1DFUP 5IP7C 5IZNA 1I6HC 4Q5SA 2BE5A 4WCES 2AE0X 2ZJPS 5GAGW 1TWAC 2L3UA 5IYBC 2PA8D 2NVXC 2B63C 4IO9S 1D6KA 4G7HA 1Y1VC 4A3MC 2PI8A 3HKZD 4LK1A 3S15C 2HZ7A 3PO3C 4XSXA 4KN4A 3W2WB 3DLLS 3PO2C 4OIRA 2JA8C 3CF5S 3H0GC 3RZOC 2KXYA 2EGWA 5HQHA 2R92C 4BY7C 1O0BA 1EXDA 2WAQD 4MEXA 5GAEW 5IP9C 2PNWA 4WF9S 3GTKC 1NXZA 2RE8A 3HOVC 3M4OC 3S1MC 4H3SA 4E8BA 3GTQC 1EUYA 2NVYC 2WB1D 4JK1A 4A3FC 4BXXC 1Y1WC 2PPBA 4A3IC 5TMFA 4XLPA 2E2JC 4A3GC 1YNNA 3S1RC 2CX8A 4BBRC 4YFKA 2O5IA 3X1LB 4J3CA 1SMYA 5DM7S 5FLMC 3HOZC 4BBSC 4X6AC 3LYWA 4A93C 4C3IC 1TWCC 3CQZC 2Z0YA 1GTSA 3EQLA 5D4DA 5JVHS 2JA7C 1BDFA 1IW7A 1I50C 1HQMA 5C44C 1TWFC 4OIOA 1TWHC 4LLGA 2R93C 4A3JC 1VHKA 3PIPS 4WFAS 1Z85A 1TWGC 4JXZA 3HOWC 4LK0A 5C3EC 3PIOS 3GTJC 3S2HC 1YNJA 1NYLA 4JXXA 2KPUA 4C2MC 3KW2A 4Y52C 2YU9C 4C3JC 1QRUA 3S16C 2PMZD 5JVGS 3J7ZV 4LJZA 4YG2A 3S1QC 2A6EA 3I4NC 2PJJA 4QIWD 4G7ZA 4A3LC 1O0CA 3I4MC 2PICA 2GAEA 4YFNA 5BNZA 2A68A 4MEYA 3DXJA 4C3HC 4YFXA 1ZYRA 2KQ1A 4XSZA 2NWAA 2JA5C 5GAHW 3CZBA 2ZJRS 2L5NA 4G7OA 4GZYA 4A3CC 4XLNA 1VHYA 5C4XC 4WFNS 2RD2A 3W2VB 1SFOC 3GTMC 5TMCA 3WODA 1R9TC 2A6HA 2NVQC 3S2DC 4OIPA 2CW0A 5C4JC 2G6GA 1QTQA 4QJVA 1ZJWA 1V6ZA 1WCMC 4AYBD 3M3YC 1K83C 3S1NC 1QRTA 1EUQA 4BY1C 3GTPC 5DM6S 1I6VA 4OIQA 4Y7NC 4L69A 3S14C 2E2IC 4A3EC 3GTLC 5IYDC 4KN7A 2JA6C 2O5JA 1FEUA 3HOYC 1B75A 2A69A 4A3KC 4IOCS 2E2HC 3HOXC 2R7ZC 3AIIA 4V194 3HOUC 4P2BA 4WFBS 2ZJQS 4JYZA 4ZH4A 3GTOC 4UY88 2G5DA 3FKIC 3K7AC 3H3VD 4NOIA 4U67S 1GTRA 2EGVA 3RZDC 1I3QC 4MQ9A 4OINA 4IOAS 4A3DC 4KMUA 4A3BC 4H4KA 2Y0SD
chains in the Genus database with same CATH topology
5GADW 1ZJWA 1QRSA 1UDXA 1EUYA 1QRUA 5JVGS 3J7ZV 1QRTA 5HL7S 1EUQA 5DM6S 1DFUP 5IZNA 3X1LB 4WCES 2ZJPS 5GAGW 1O0CA 5DM7S 1FEUA 4IO9S 1D6KA 1B75A 5BNZA 4IOCS 2HZ7A 1GTSA 5JVHS 3AIIA 4V194 3W2WB 4P2BA 4WFBS 3DLLS 2ZJQS 4JYZA 3CF5S 5GAHW 2ZJRS 4UY88 3PIPS 1O0BA 1EXDA 4WFNS 4WFAS 4U67S 2RD2A 5GAEW 4JXZA 3W2VB 1GTRA 3PIOS 4WF9S 1NYLA 4JXXA 2RE8A 4IOAS 4H3SA 4H4KA 1QTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD W;  1ZJW A;  1QRS A;  1EUY A;  1QRU A;  5JVG S;  3J7Z V;  1QRT A;  5HL7 S;  1EUQ A;  5DM6 S;  1DFU P;  5IZN A;  4WCE S;  2ZJP S;  5GAG W;  1O0C A;  5DM7 S;  1FEU A;  4IO9 S;  1D6K A;  1B75 A;  5BNZ A;  4IOC S;  2HZ7 A;  1GTS A;  5JVH S;  3AII A;  4P2B A;  4WFB S;  3DLL S;  2ZJQ S;  4JYZ A;  3CF5 S;  5GAH W;  2ZJR S;  4UY8 8;  3PIP S;  1O0B A;  1EXD A;  4WFN S;  4U67 S;  4WFA S;  2RD2 A;  5GAE W;  4JXZ A;  1GTR A;  3PIO S;  4WF9 S;  1NYL A;  4JXX A;  2RE8 A;  4IOA S;  4H3S A;  1QTQ A; 
#chains in the Genus database with same CATH topology
 2VUM C;  2NVT C;  5GAD W;  1QRS A;  5IYC C;  1UDX A;  4Q4Z A;  3S17 C;  5HL7 S;  3GTG C;  1DFU P;  5IP7 C;  5IZN A;  1I6H C;  4Q5S A;  2BE5 A;  4WCE S;  2AE0 X;  2ZJP S;  5GAG W;  1TWA C;  2L3U A;  5IYB C;  2PA8 D;  2NVX C;  2B63 C;  4IO9 S;  1D6K A;  4G7H A;  1Y1V C;  4A3M C;  2PI8 A;  3HKZ D;  4LK1 A;  3S15 C;  2HZ7 A;  3PO3 C;  4XSX A;  4KN4 A;  3W2W B;  3DLL S;  3PO2 C;  4OIR A;  2JA8 C;  3CF5 S;  3H0G C;  3RZO C;  2KXY A;  2EGW A;  5HQH A;  2R92 C;  4BY7 C;  1O0B A;  1EXD A;  2WAQ D;  4MEX A;  5GAE W;  5IP9 C;  2PNW A;  4WF9 S;  3GTK C;  1NXZ A;  2RE8 A;  3HOV C;  3M4O C;  3S1M C;  4H3S A;  4E8B A;  3GTQ C;  1EUY A;  2NVY C;  2WB1 D;  4JK1 A;  4A3F C;  4BXX C;  1Y1W C;  2PPB A;  4A3I C;  5TMF A;  4XLP A;  2E2J C;  4A3G C;  1YNN A;  3S1R C;  2CX8 A;  4BBR C;  4YFK A;  2O5I A;  3X1L B;  4J3C A;  1SMY A;  5DM7 S;  5FLM C;  3HOZ C;  4BBS C;  4X6A C;  3LYW A;  4A93 C;  4C3I C;  1TWC C;  3CQZ C;  2Z0Y A;  1GTS A;  3EQL A;  5D4D A;  5JVH S;  2JA7 C;  1BDF A;  1IW7 A;  1I50 C;  1HQM A;  5C44 C;  1TWF C;  4OIO A;  1TWH C;  4LLG A;  2R93 C;  4A3J C;  1VHK A;  3PIP S;  4WFA S;  1Z85 A;  1TWG C;  4JXZ A;  3HOW C;  4LK0 A;  5C3E C;  3PIO S;  3GTJ C;  3S2H C;  1YNJ A;  1NYL A;  4JXX A;  2KPU A;  4C2M C;  3KW2 A;  4Y52 C;  2YU9 C;  4C3J C;  1QRU A;  3S16 C;  2PMZ D;  5JVG S;  3J7Z V;  4LJZ A;  4YG2 A;  3S1Q C;  2A6E A;  3I4N C;  2PJJ A;  4QIW D;  4G7Z A;  4A3L C;  1O0C A;  3I4M C;  2PIC A;  2GAE A;  4YFN A;  5BNZ A;  2A68 A;  4MEY A;  3DXJ A;  4C3H C;  4YFX A;  1ZYR A;  2KQ1 A;  4XSZ A;  2NWA A;  2JA5 C;  5GAH W;  3CZB A;  2ZJR S;  2L5N A;  4G7O A;  4GZY A;  4A3C C;  4XLN A;  1VHY A;  5C4X C;  4WFN S;  2RD2 A;  3W2V B;  1SFO C;  3GTM C;  5TMC A;  3WOD A;  1R9T C;  2A6H A;  2NVQ C;  3S2D C;  4OIP A;  2CW0 A;  5C4J C;  2G6G A;  1QTQ A;  4QJV A;  1ZJW A;  1V6Z A;  1WCM C;  4AYB D;  3M3Y C;  1K83 C;  3S1N C;  1QRT A;  1EUQ A;  4BY1 C;  3GTP C;  5DM6 S;  1I6V A;  4OIQ A;  4Y7N C;  4L69 A;  3S14 C;  2E2I C;  4A3E C;  3GTL C;  5IYD C;  4KN7 A;  2JA6 C;  2O5J A;  1FEU A;  3HOY C;  1B75 A;  2A69 A;  4A3K C;  4IOC S;  2E2H C;  3HOX C;  2R7Z C;  3AII A;  4V19 4;  3HOU C;  4P2B A;  4WFB S;  2ZJQ S;  4JYZ A;  4ZH4 A;  3GTO C;  4UY8 8;  2G5D A;  3FKI C;  3K7A C;  3H3V D;  4NOI A;  4U67 S;  1GTR A;  2EGV A;  3RZD C;  1I3Q C;  4MQ9 A;  4OIN A;  4IOA S;  4A3D C;  4KMU A;  4A3B C;  4H4K A;  2Y0S D; 
#chains in the Genus database with same CATH homology
 5GAD W;  1ZJW A;  1QRS A;  1UDX A;  1EUY A;  1QRU A;  5JVG S;  3J7Z V;  1QRT A;  5HL7 S;  1EUQ A;  5DM6 S;  1DFU P;  5IZN A;  3X1L B;  4WCE S;  2ZJP S;  5GAG W;  1O0C A;  5DM7 S;  1FEU A;  4IO9 S;  1D6K A;  1B75 A;  5BNZ A;  4IOC S;  2HZ7 A;  1GTS A;  5JVH S;  3AII A;  4V19 4;  3W2W B;  4P2B A;  4WFB S;  3DLL S;  2ZJQ S;  4JYZ A;  3CF5 S;  5GAH W;  2ZJR S;  4UY8 8;  3PIP S;  1O0B A;  1EXD A;  4WFN S;  4WFA S;  4U67 S;  2RD2 A;  5GAE W;  4JXZ A;  3W2V B;  1GTR A;  3PIO S;  4WF9 S;  1NYL A;  4JXX A;  2RE8 A;  4IOA S;  4H3S A;  4H4K A;  1QTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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