1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
1TJVA 4EFCA 2YIIA 1HY1A 1AUWA 1U16A 2O7FA 1TJWA 1HY0A 1DOFA 2HVGA 3E04A 3KDYA 5EYVA 1FURA 1FUQA 1I0AA 3OCEA 2RJRA 4FLCA 3OCFA 5F91A 1GK3A 2QVEA 4FFXA 1VDKA 4HGVA 4ADMA 1XWOA 4C6GA 5EYTA 1DCNA 2E9FA 3KDZA 4NLEA 2NYNA 1C3UA 4C5UA 1T6JA 1YFMA 1C3CA 1YFEA 3RD8A 3GZHA 3GTDA 1K62A 1EB4A 4CQ5A 5D6BA 2PTSA 3TV2A 3R6YA 1B8FA 2NYFA 3QBPA 1JSWA 2X75A 4V2RA 4C5RA 2QGAB 1GKJA 1GKMA 1FUOA 1FUPA 2O7BA 1J3UA 1T6PA 2J91A 4APAA 4BABA 4V2QA 2PTRA 2PFMA 2O78A 2PTQA 3BHGA 5HW2A 3R6QA 2O7EA 1K7WA 1KQ7A 1TJUA 1Y2MA 1GK2A 1U15A 1TJ7A 2FUSA 4C5SA 2O7DA 4ADLA 1YISA 2RJSA 3RRPA 4MX2A 1RE5A 2VD6A 3UNVA 3R6VA 4APBA 3NO9A 5F92A 4EEIA 3CZOA 2O6YA 4NSLA 1W27A 3NZ4A 2OHYA 1Q5NA 4BAAA 3C8TA
chains in the Genus database with same CATH superfamily
1TJVA 4EFCA 2YIIA 1HY1A 1AUWA 1U16A 3CI0K 2O7FA 1TJWA 1Z4KA 1HY0A 1DOFA 1Z4MA 2HVGA 3E04A 3KDYA 5EYVA 1FURA 5H8WA 1FUQA 1I0AA 3OCEA 2RJRA 4FLCA 5M0IA 1Q92A 2VSFA 3OCFA 4NFLA 5F91A 1GK3A 1Z4IA 2QVEA 3CRW1 4FFXA 4MUMA 1VDKA 4HGVA 2FENA 2JAUA 2D27A 1Z4PX 1XWOA 4ADMA 4C6GA 5EYTA 1DCNA 2E9FA 3KDZA 4NLEA 1XLYA 2NYNA 1Z4JA 1C3UA 4C5UA 1T6JA 5M0JA 1YFMA 1C3CA 1YFEA 3RD8A 4A15A 3GZHA 3GTDA 3F4RA 1XL7A 1K62A 1EB4A 1XL8A 4CQ5A 5D6BA 2PTSA 3TV2A 1XMCA 1Q91A 3R6YA 1B8FA 2NYFA 3QBPA 1JSWA 2X75A 4V2RA 3F4SA 4YIHA 2JARA 2QGAB 4MWOA 4C5RA 4E88A 3U13A 4YIKA 1GKJA 1GKMA 1FUOA 2JAWA 1FUPA 3BWVA 2RCNA 2O7BA 1J3UA 1T6PA 2YV5A 2J91A 4APAA 4BABA 4IQJM 4V2QA 2PTRA 2PFMA 2D28C 1XMDA 2I7DA 2O78A 2PTQA 3BHGA 5HW2A 3CRVA 1IW7D 1MH9A 4L6CA 4L57A 3R6QA 2O7EA 1K7WA 1KQ7A 1TJUA 1Z4LA 1Y2MA 1GK2A 4L6AA 2FELA 1U15A 1TJ7A 2FUSA 4C5SA 1U0LA 2O7DA 4ADLA 1YISA 2RJSA 2JAOA 3RRPA 4MX2A 1RE5A 2VD6A 1Z4QA 3UNVA 3R6VA 4WNLA 4APBA 3NO9A 1T9HA 3F4TA 5F92A 4EEIA 3U19A 3CZOA 2O6YA 4NSLA 1W27A 3NZ4A 2OHYA 1Q5NA 4BAAA 3C8TA 2VL7A
chains in the Genus database with same CATH topology
1TJVA 4EFCA 2YIIA 1HY1A 1AUWA 1U16A 2O7FA 1TJWA 1HY0A 1DOFA 2HVGA 3E04A 3KDYA 5EYVA 1FURA 1FUQA 1I0AA 3OCEA 2RJRA 4FLCA 3OCFA 5F91A 1GK3A 2QVEA 4FFXA 1VDKA 4HGVA 4ADMA 1XWOA 4C6GA 5EYTA 1DCNA 2E9FA 3KDZA 4NLEA 2NYNA 1C3UA 4C5UA 1T6JA 1YFMA 1C3CA 1YFEA 3RD8A 3GZHA 3GTDA 1K62A 1EB4A 4CQ5A 5D6BA 2PTSA 3TV2A 3R6YA 1B8FA 2NYFA 3QBPA 1JSWA 2X75A 4V2RA 4C5RA 2QGAB 1GKJA 1GKMA 1FUOA 1FUPA 2O7BA 1J3UA 1T6PA 2J91A 4APAA 4BABA 4V2QA 2PTRA 2PFMA 2O78A 2PTQA 3BHGA 5HW2A 3R6QA 2O7EA 1K7WA 1KQ7A 1TJUA 1Y2MA 1GK2A 1U15A 1TJ7A 2FUSA 4C5SA 2O7DA 4ADLA 1YISA 2RJSA 3RRPA 4MX2A 1RE5A 2VD6A 3UNVA 3R6VA 4APBA 3NO9A 5F92A 4EEIA 3CZOA 2O6YA 4NSLA 1W27A 3NZ4A 2OHYA 1Q5NA 4BAAA 3C8TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJV A;  4EFC A;  2YII A;  1HY1 A;  1AUW A;  1U16 A;  2O7F A;  1TJW A;  1HY0 A;  1DOF A;  2HVG A;  3E04 A;  3KDY A;  5EYV A;  1FUR A;  1FUQ A;  1I0A A;  3OCE A;  2RJR A;  4FLC A;  3OCF A;  5F91 A;  1GK3 A;  2QVE A;  4FFX A;  1VDK A;  4HGV A;  4ADM A;  1XWO A;  4C6G A;  5EYT A;  1DCN A;  2E9F A;  3KDZ A;  4NLE A;  2NYN A;  1C3U A;  4C5U A;  1T6J A;  1YFM A;  1C3C A;  1YFE A;  3RD8 A;  3GZH A;  3GTD A;  1K62 A;  1EB4 A;  4CQ5 A;  5D6B A;  2PTS A;  3TV2 A;  3R6Y A;  1B8F A;  2NYF A;  3QBP A;  1JSW A;  2X75 A;  4V2R A;  4C5R A;  2QGA B;  1GKJ A;  1GKM A;  1FUO A;  1FUP A;  2O7B A;  1J3U A;  1T6P A;  2J91 A;  4APA A;  4BAB A;  4V2Q A;  2PTR A;  2PFM A;  2O78 A;  2PTQ A;  3BHG A;  5HW2 A;  3R6Q A;  2O7E A;  1K7W A;  1KQ7 A;  1TJU A;  1Y2M A;  1GK2 A;  1U15 A;  1TJ7 A;  2FUS A;  4C5S A;  2O7D A;  4ADL A;  1YIS A;  2RJS A;  3RRP A;  4MX2 A;  1RE5 A;  2VD6 A;  3UNV A;  3R6V A;  4APB A;  3NO9 A;  5F92 A;  4EEI A;  3CZO A;  2O6Y A;  4NSL A;  1W27 A;  3NZ4 A;  2OHY A;  1Q5N A;  4BAA A;  3C8T A; 
#chains in the Genus database with same CATH topology
 1TJV A;  4EFC A;  2YII A;  1HY1 A;  1AUW A;  1U16 A;  3CI0 K;  2O7F A;  1TJW A;  1Z4K A;  1HY0 A;  1DOF A;  1Z4M A;  2HVG A;  3E04 A;  3KDY A;  5EYV A;  1FUR A;  5H8W A;  1FUQ A;  1I0A A;  3OCE A;  2RJR A;  4FLC A;  5M0I A;  1Q92 A;  2VSF A;  3OCF A;  4NFL A;  5F91 A;  1GK3 A;  1Z4I A;  2QVE A;  3CRW 1;  4FFX A;  4MUM A;  1VDK A;  4HGV A;  2FEN A;  2JAU A;  2D27 A;  1Z4P X;  1XWO A;  4ADM A;  4C6G A;  5EYT A;  1DCN A;  2E9F A;  3KDZ A;  4NLE A;  1XLY A;  2NYN A;  1Z4J A;  1C3U A;  4C5U A;  1T6J A;  5M0J A;  1YFM A;  1C3C A;  1YFE A;  3RD8 A;  4A15 A;  3GZH A;  3GTD A;  3F4R A;  1XL7 A;  1K62 A;  1EB4 A;  1XL8 A;  4CQ5 A;  5D6B A;  2PTS A;  3TV2 A;  1XMC A;  1Q91 A;  3R6Y A;  1B8F A;  2NYF A;  3QBP A;  1JSW A;  2X75 A;  4V2R A;  3F4S A;  4YIH A;  2JAR A;  2QGA B;  4MWO A;  4C5R A;  4E88 A;  3U13 A;  4YIK A;  1GKJ A;  1GKM A;  1FUO A;  2JAW A;  1FUP A;  3BWV A;  2RCN A;  2O7B A;  1J3U A;  1T6P A;  2YV5 A;  2J91 A;  4APA A;  4BAB A;  4IQJ M;  4V2Q A;  2PTR A;  2PFM A;  2D28 C;  1XMD A;  2I7D A;  2O78 A;  2PTQ A;  3BHG A;  5HW2 A;  3CRV A;  1IW7 D;  1MH9 A;  4L6C A;  4L57 A;  3R6Q A;  2O7E A;  1K7W A;  1KQ7 A;  1TJU A;  1Z4L A;  1Y2M A;  1GK2 A;  4L6A A;  2FEL A;  1U15 A;  1TJ7 A;  2FUS A;  4C5S A;  1U0L A;  2O7D A;  4ADL A;  1YIS A;  2RJS A;  2JAO A;  3RRP A;  4MX2 A;  1RE5 A;  2VD6 A;  1Z4Q A;  3UNV A;  3R6V A;  4WNL A;  4APB A;  3NO9 A;  1T9H A;  3F4T A;  5F92 A;  4EEI A;  3U19 A;  3CZO A;  2O6Y A;  4NSL A;  1W27 A;  3NZ4 A;  2OHY A;  1Q5N A;  4BAA A;  3C8T A;  2VL7 A; 
#chains in the Genus database with same CATH homology
 1TJV A;  4EFC A;  2YII A;  1HY1 A;  1AUW A;  1U16 A;  2O7F A;  1TJW A;  1HY0 A;  1DOF A;  2HVG A;  3E04 A;  3KDY A;  5EYV A;  1FUR A;  1FUQ A;  1I0A A;  3OCE A;  2RJR A;  4FLC A;  3OCF A;  5F91 A;  1GK3 A;  2QVE A;  4FFX A;  1VDK A;  4HGV A;  4ADM A;  1XWO A;  4C6G A;  5EYT A;  1DCN A;  2E9F A;  3KDZ A;  4NLE A;  2NYN A;  1C3U A;  4C5U A;  1T6J A;  1YFM A;  1C3C A;  1YFE A;  3RD8 A;  3GZH A;  3GTD A;  1K62 A;  1EB4 A;  4CQ5 A;  5D6B A;  2PTS A;  3TV2 A;  3R6Y A;  1B8F A;  2NYF A;  3QBP A;  1JSW A;  2X75 A;  4V2R A;  4C5R A;  2QGA B;  1GKJ A;  1GKM A;  1FUO A;  1FUP A;  2O7B A;  1J3U A;  1T6P A;  2J91 A;  4APA A;  4BAB A;  4V2Q A;  2PTR A;  2PFM A;  2O78 A;  2PTQ A;  3BHG A;  5HW2 A;  3R6Q A;  2O7E A;  1K7W A;  1KQ7 A;  1TJU A;  1Y2M A;  1GK2 A;  1U15 A;  1TJ7 A;  2FUS A;  4C5S A;  2O7D A;  4ADL A;  1YIS A;  2RJS A;  3RRP A;  4MX2 A;  1RE5 A;  2VD6 A;  3UNV A;  3R6V A;  4APB A;  3NO9 A;  5F92 A;  4EEI A;  3CZO A;  2O6Y A;  4NSL A;  1W27 A;  3NZ4 A;  2OHY A;  1Q5N A;  4BAA A;  3C8T A; 
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similar chains in the pdb database (?% sequence similarity)

 
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