The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
164
|
sequence length |
462
|
structure length |
462
|
Chain Sequence |
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family
pubmed doi rcsb |
| molecule keywords |
aspartase
|
| molecule tags |
Lyase
|
| source organism |
Bacillus sp. ym55-1
|
| total genus |
164
|
| structure length |
462
|
| sequence length |
462
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.3.1.1: Aspartate ammonia-lyase. |
| pdb deposition date | 2003-02-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00206 | Lyase_1 | Lyase |
| A | PF10415 | FumaraseC_C | Fumarase C C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase Protein R1; domain 1 | Fumarase/aspartase (C-terminal domain) | ||
| Mainly Alpha | Orthogonal Bundle | Fumarase C; Chain B, domain 1 | Fumarase/aspartase (N-terminal domain) | ||
| Mainly Alpha | Up-down Bundle | Fumarase C; Chain A, domain 2 | Fumarase/aspartase (Central domain) |
#chains in the Genus database with same CATH superfamily 3NO9 A; 1U15 A; 4APB A; 2O78 A; 2X75 A; 3RRP A; 4NSL A; 4BAB A; 3QBP A; 1FUO A; 2O7B A; 1HY0 A; 3GTD A; 2QGA B; 3KDY A; 4V2R A; 2HVG A; 1GK3 A; 3E04 A; 1TJ7 A; 3OCE A; 2PTR A; 4BAA A; 3GZH A; 2E9F A; 3R6Q A; 5F91 A; 4FLC A; 5EYT A; 2PFM A; 3BHG A; 5F92 A; 2OHY A; 3OCF A; 4EFC A; 4C5U A; 1TJU A; 1FUQ A; 1GK2 A; 4MX2 A; 1C3C A; 1DOF A; 2VD6 A; 1FUR A; 1K62 A; 4HGV A; 2J91 A; 1TJW A; 1AUW A; 2YII A; 1U16 A; 4C5R A; 1B8F A; 4C5S A; 1DCN A; 1EB4 A; 3KDZ A; 1HY1 A; 2O7F A; 1T6P A; 4V2Q A; 1YFM A; 2NYF A; 1TJV A; 4EEI A; 4NLE A; 4ADL A; 3R6Y A; 1VDK A; 2QVE A; 3RD8 A; 2RJS A; 2NYN A; 1GKM A; 5HW2 A; 1GKJ A; 2O6Y A; 5D6B A; 1YIS A; 4ADM A; 1Q5N A; 1FUP A; 1W27 A; 1C3U A; 2FUS A; 1K7W A; 1J3U A; 1YFE A; 3TV2 A; 2O7E A; 2PTQ A; 3CZO A; 1KQ7 A; 5EYV A; 2RJR A; 1I0A A; 3UNV A; 1T6J A; 1RE5 A; 1Y2M A; 1XWO A; 1JSW A; 4FFX A; 4APA A; 4C6G A; 2O7D A; 2PTS A; 3C8T A; 3NZ4 A; 4CQ5 A; 3R6V A; #chains in the Genus database with same CATH topology 1Z4L A; 3NO9 A; 1U15 A; 1Q91 A; 3CI0 K; 3U19 A; 1U0L A; 4APB A; 2O78 A; 4YIK A; 2VL7 A; 3F4R A; 2X75 A; 3RRP A; 4NSL A; 4BAB A; 3QBP A; 2RCN A; 1XMD A; 1FUO A; 2O7B A; 1HY0 A; 3GTD A; 1Z4P X; 3BWV A; 2QGA B; 2FEL A; 3KDY A; 4V2R A; 2HVG A; 1GK3 A; 2I7D A; 3E04 A; 1TJ7 A; 1XL7 A; 3OCE A; 2PTR A; 3CRW 1; 4BAA A; 2D27 A; 3GZH A; 2E9F A; 3R6Q A; 5H8W A; 5F91 A; 4FLC A; 5EYT A; 2PFM A; 3BHG A; 5F92 A; 2OHY A; 3OCF A; 4EFC A; 4C5U A; 5M0I A; 4A15 A; 1TJU A; 1FUQ A; 1XLY A; 1GK2 A; 4YIH A; 4L6A A; 4MX2 A; 1C3C A; 1DOF A; 2VD6 A; 1Z4M A; 1FUR A; 4MWO A; 1K62 A; 4HGV A; 1XL8 A; 4IQJ M; 2J91 A; 1TJW A; 1AUW A; 2YII A; 1U16 A; 4C5R A; 1B8F A; 4WNL A; 4C5S A; 1DCN A; 3F4S A; 1Z4J A; 1EB4 A; 3KDZ A; 1HY1 A; 2JAU A; 2O7F A; 1T6P A; 5M0J A; 4V2Q A; 1YFM A; 2NYF A; 1TJV A; 2JAR A; 2D28 C; 4E88 A; 4EEI A; 4NLE A; 4ADL A; 3R6Y A; 4MUM A; 1VDK A; 2QVE A; 3CRV A; 3RD8 A; 1Q92 A; 1Z4I A; 2RJS A; 2NYN A; 1GKM A; 5HW2 A; 1GKJ A; 2O6Y A; 5D6B A; 1XMC A; 1YIS A; 4ADM A; 1Q5N A; 1Z4Q A; 1FUP A; 1W27 A; 1MH9 A; 1C3U A; 2FUS A; 1K7W A; 1J3U A; 2YV5 A; 1YFE A; 4L57 A; 1T9H A; 4NFL A; 3TV2 A; 1IW7 D; 2O7E A; 2PTQ A; 4L6C A; 1KQ7 A; 3CZO A; 5EYV A; 2JAW A; 2RJR A; 3NZ4 A; 1I0A A; 3UNV A; 1T6J A; 1RE5 A; 1Y2M A; 3R6V A; 2JAO A; 1JSW A; 4FFX A; 2FEN A; 4APA A; 4C6G A; 3U13 A; 2VSF A; 1Z4K A; 2O7D A; 2PTS A; 3C8T A; 3F4T A; 4CQ5 A; 1XWO A; #chains in the Genus database with same CATH homology 3NO9 A; 1U15 A; 4APB A; 2O78 A; 2X75 A; 3RRP A; 4NSL A; 4BAB A; 3QBP A; 1FUO A; 2O7B A; 1HY0 A; 3GTD A; 2QGA B; 3KDY A; 4V2R A; 2HVG A; 1GK3 A; 3E04 A; 1TJ7 A; 3OCE A; 2PTR A; 4BAA A; 3GZH A; 2E9F A; 3R6Q A; 5F91 A; 4FLC A; 5EYT A; 2PFM A; 3BHG A; 5F92 A; 2OHY A; 3OCF A; 4EFC A; 4C5U A; 1TJU A; 1FUQ A; 1GK2 A; 4MX2 A; 1C3C A; 1DOF A; 2VD6 A; 1FUR A; 1K62 A; 4HGV A; 2J91 A; 1TJW A; 1AUW A; 2YII A; 1U16 A; 4C5R A; 1B8F A; 4C5S A; 1DCN A; 1EB4 A; 3KDZ A; 1HY1 A; 2O7F A; 1T6P A; 4V2Q A; 1YFM A; 2NYF A; 1TJV A; 4EEI A; 4NLE A; 4ADL A; 3R6Y A; 1VDK A; 2QVE A; 3RD8 A; 2RJS A; 2NYN A; 1GKM A; 5HW2 A; 1GKJ A; 2O6Y A; 5D6B A; 1YIS A; 4ADM A; 1Q5N A; 1FUP A; 1W27 A; 1C3U A; 2FUS A; 1K7W A; 1J3U A; 1YFE A; 3TV2 A; 2O7E A; 2PTQ A; 3CZO A; 1KQ7 A; 5EYV A; 2RJR A; 1I0A A; 3UNV A; 1T6J A; 1RE5 A; 1Y2M A; 1XWO A; 1JSW A; 4FFX A; 4APA A; 4C6G A; 2O7D A; 2PTS A; 3C8T A; 3NZ4 A; 4CQ5 A; 3R6V A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
