The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
151
|
sequence length |
459
|
structure length |
450
|
Chain Sequence |
SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEIVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of native and recombinant yeast fumarase.
pubmed doi rcsb |
| molecule keywords |
FUMARASE
|
| molecule tags |
Lyase
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
151
|
| structure length |
450
|
| sequence length |
459
|
| ec nomenclature |
ec
4.2.1.2: Fumarate hydratase. |
| pdb deposition date | 1998-01-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00206 | Lyase_1 | Lyase |
| A | PF10415 | FumaraseC_C | Fumarase C C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase Protein R1; domain 1 | Fumarase/aspartase (C-terminal domain) | ||
| Mainly Alpha | Orthogonal Bundle | Fumarase C; Chain B, domain 1 | Fumarase/aspartase (N-terminal domain) | ||
| Mainly Alpha | Up-down Bundle | Fumarase C; Chain A, domain 2 | Fumarase/aspartase (Central domain) |
#chains in the Genus database with same CATH superfamily 1C3U A; 1YFE A; 4V2R A; 4EFC A; 3R6Y A; 4V2Q A; 1W27 A; 1TJW A; 4APA A; 1AUW A; 1FUO A; 1TJU A; 1U15 A; 2OHY A; 4C5S A; 1U16 A; 2O7F A; 4EEI A; 1KQ7 A; 2QVE A; 3R6V A; 1DOF A; 4FLC A; 3TV2 A; 5HW2 A; 2PFM A; 4MX2 A; 4NLE A; 4HGV A; 4FFX A; 3RD8 A; 3RRP A; 1XWO A; 2O7B A; 1HY0 A; 3OCF A; 3KDY A; 1VDK A; 3CZO A; 1J3U A; 1TJ7 A; 2J91 A; 1Q5N A; 4BAB A; 1K7W A; 1GKM A; 4APB A; 1T6P A; 1FUQ A; 3GZH A; 5EYV A; 3NZ4 A; 2RJS A; 1RE5 A; 3R6Q A; 1EB4 A; 2O6Y A; 4CQ5 A; 5EYT A; 2VD6 A; 2HVG A; 1T6J A; 5D6B A; 1Y2M A; 4C5U A; 2PTR A; 1FUP A; 2QGA B; 3C8T A; 1JSW A; 1GK3 A; 1GK2 A; 5F92 A; 2O78 A; 4BAA A; 2O7E A; 2YII A; 2NYN A; 2RJR A; 3BHG A; 1C3C A; 2X75 A; 1YIS A; 1DCN A; 3UNV A; 1FUR A; 1B8F A; 1K62 A; 4C6G A; 4C5R A; 1YFM A; 2PTS A; 3GTD A; 4ADM A; 3OCE A; 1HY1 A; 3QBP A; 2NYF A; 2O7D A; 1TJV A; 4ADL A; 4NSL A; 3KDZ A; 2FUS A; 1GKJ A; 3E04 A; 5F91 A; 2PTQ A; 3NO9 A; 1I0A A; 2E9F A; #chains in the Genus database with same CATH topology 1C3U A; 1YFE A; 4V2R A; 4EFC A; 3R6Y A; 4L6C A; 4V2Q A; 1W27 A; 1TJW A; 4APA A; 1Q91 A; 1AUW A; 3BWV A; 1FUO A; 1TJU A; 1U15 A; 2OHY A; 4C5S A; 1U16 A; 2O7F A; 4EEI A; 3F4S A; 3F4R A; 1Z4I A; 2FEN A; 5M0J A; 1KQ7 A; 4YIK A; 2QVE A; 3R6V A; 2YV5 A; 1DOF A; 4IQJ M; 4FLC A; 4MUM A; 3TV2 A; 5HW2 A; 2PFM A; 4MX2 A; 4L57 A; 3F4T A; 4NLE A; 4HGV A; 4FFX A; 4MWO A; 1Z4J A; 1Z4K A; 2JAU A; 1IW7 D; 4A15 A; 1Z4M A; 2JAO A; 3RD8 A; 3U13 A; 3RRP A; 1XWO A; 5M0I A; 2O7B A; 1HY0 A; 3OCF A; 3KDY A; 1VDK A; 3CZO A; 4L6A A; 1J3U A; 1TJ7 A; 2J91 A; 1Q5N A; 1Q92 A; 4BAB A; 1K7W A; 2RCN A; 1GKM A; 4APB A; 1T6P A; 1FUQ A; 3GZH A; 2VL7 A; 1Z4L A; 1Z4P X; 5EYV A; 3NZ4 A; 2RJS A; 2VSF A; 1RE5 A; 3R6Q A; 1EB4 A; 2O6Y A; 4CQ5 A; 5H8W A; 5EYT A; 2VD6 A; 2HVG A; 1T6J A; 5D6B A; 1Y2M A; 4C5U A; 2PTR A; 1FUP A; 2QGA B; 3C8T A; 1JSW A; 1GK3 A; 1GK2 A; 5F92 A; 2O78 A; 4BAA A; 2O7E A; 2YII A; 3CRV A; 2NYN A; 2RJR A; 1XMD A; 4NFL A; 4YIH A; 3BHG A; 1C3C A; 2X75 A; 1YIS A; 1DCN A; 3UNV A; 1FUR A; 1B8F A; 1K62 A; 4E88 A; 3CRW 1; 4C6G A; 4C5R A; 1YFM A; 2PTS A; 2D28 C; 1XMC A; 3GTD A; 2JAW A; 2JAR A; 4ADM A; 2I7D A; 2FEL A; 1XL7 A; 3OCE A; 4WNL A; 1HY1 A; 3QBP A; 2NYF A; 2O7D A; 1TJV A; 4ADL A; 1XLY A; 4NSL A; 3CI0 K; 2D27 A; 3KDZ A; 2FUS A; 1U0L A; 3E04 A; 1GKJ A; 1XL8 A; 5F91 A; 2PTQ A; 3NO9 A; 1MH9 A; 1T9H A; 1I0A A; 3U19 A; 1Z4Q A; 2E9F A; #chains in the Genus database with same CATH homology 1C3U A; 1YFE A; 4V2R A; 4EFC A; 3R6Y A; 4V2Q A; 1W27 A; 1TJW A; 4APA A; 1AUW A; 1FUO A; 1TJU A; 1U15 A; 2OHY A; 4C5S A; 1U16 A; 2O7F A; 4EEI A; 1KQ7 A; 2QVE A; 3R6V A; 1DOF A; 4FLC A; 3TV2 A; 5HW2 A; 2PFM A; 4MX2 A; 4NLE A; 4HGV A; 4FFX A; 3RD8 A; 3RRP A; 1XWO A; 2O7B A; 1HY0 A; 3OCF A; 3KDY A; 1VDK A; 3CZO A; 1J3U A; 1TJ7 A; 2J91 A; 1Q5N A; 4BAB A; 1K7W A; 1GKM A; 4APB A; 1T6P A; 1FUQ A; 3GZH A; 5EYV A; 3NZ4 A; 2RJS A; 1RE5 A; 3R6Q A; 1EB4 A; 2O6Y A; 4CQ5 A; 5EYT A; 2VD6 A; 2HVG A; 1T6J A; 5D6B A; 1Y2M A; 4C5U A; 2PTR A; 1FUP A; 2QGA B; 3C8T A; 1JSW A; 1GK3 A; 1GK2 A; 5F92 A; 2O78 A; 4BAA A; 2O7E A; 2YII A; 2NYN A; 2RJR A; 3BHG A; 1C3C A; 2X75 A; 1YIS A; 1DCN A; 3UNV A; 1FUR A; 1B8F A; 1K62 A; 4C6G A; 4C5R A; 1YFM A; 2PTS A; 3GTD A; 4ADM A; 3OCE A; 1HY1 A; 3QBP A; 2NYF A; 2O7D A; 1TJV A; 4ADL A; 4NSL A; 3KDZ A; 2FUS A; 1GKJ A; 3E04 A; 5F91 A; 2PTQ A; 3NO9 A; 1I0A A; 2E9F A;
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