2E9FA

Crystal structure of t.th.hb8 argininosuccinate lyase complexed with l-arginine
Total Genus 168
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
449
structure length
449
Chain Sequence
PDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (16-22)AH4 (54-73)3H2 (99-103)AH2 (24-29)TI1 (103-106)AH3 (31-49)AH5 (85-97)EMPTYO1 (82-84)3H1 (80-82)AH7 (168-193)TII1 (105-108)AH6 (110-147)AH18 (445-458)TIV2 (148-151)S1 (153-158)AH10 (236-262)S2 (161-167)S3 (195-196)TII2 (197-200)AH8 (212-219)TIV4 (201-204)AH9 (228-233)S4 (223-224)TIV7 (280-283)TIV5 (264-267)3H3 (274-276)TIV8 (281-284)S7 (287-288)AH11 (290-313)TIV9 (283-286)O4 (288-290)TII3 (313-316)3H4 (322-326)3H5 (349-351)S8 (353-354)TI2 (417-420)AH13 (356-363)AH16 (410-416)TIV10 (365-368)3H6 (405-407)3H7 (422-427)AH17 (430-434)TIV12 (435-438)TII4 (439-442)AH12 (327-348)TIV1 (147-150)TIV3 (157-160)O3 (208-210)TII'1 (200-203)S6 (278-279)AH15 (385-401)TIV11 (434-437)AH14 (369-380)Updating...
connected with : NaN
molecule tags Lyase
source organism Thermus thermophilus
publication title Crystal Structure of T.th.HB8 Argininosuccinate lyase complexed with L-Arginine
rcsb
molecule keywords Argininosuccinate lyase
total genus 168
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2007-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2e9fA03
1.10.275.50 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 2e9fA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2e9fA02
1U15A 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 1DOFA 1YISA 4FLCA 4EFCA 5EYVA 2PFMA 3GTDA 2O7FA 4BAAA 3R6QA 1FUPA 1TJWA 1FUOA 2O7EA 2O7BA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 2J91A 5EYTA 5F92A 2O7DA 2OHYA 1HY1A 4BABA 1I0AA 1HY0A 1TJVA 1AUWA 2O6YA 1GK3A 4EEIA 1JSWA 2NYFA 1FURA 3NO9A 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4V2QA 3UNVA 1C3CA 3BHGA 4FFXA 2PTSA 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2X75A 3OCFA 4APAA 2RJSA 1YFMA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3GZHA 1U16A 2PTQA 2QGAB 5HW2A 1DCNA 3KDZA 4C5SA 1Q5NA 4V2RA 3OCEA 3KDYA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2O78A 2PTRA 5D6BA 3R6YA 1TJUA 1W27A 1C3UA 4C5UA 1GKMA 2FUSA 2E9FA 2QVEA 1J3UA 3RD8A 1GK2A 3QBPA 4ADMA
chains in the Genus database with same CATH superfamily
3F4SA 1U15A 4IQJM 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 2YV5A 1DOFA 4WNLA 1YISA 4FLCA 4EFCA 5EYVA 2PFMA 3GTDA 1U0LA 2O7FA 4BAAA 3R6QA 5H8WA 1FUPA 1TJWA 1FUOA 2O7EA 1XLYA 3CRW1 3F4TA 2O7BA 1Z4MA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 1XL8A 3F4RA 2J91A 1GK2A 5EYTA 4YIHA 1IW7D 5F92A 2VSFA 5M0JA 2O7DA 2OHYA 1HY1A 4BABA 5M0IA 1I0AA 1HY0A 4A15A 2JAUA 1TJVA 1AUWA 2O6YA 3CI0K 1GK3A 1Q91A 4EEIA 1JSWA 2NYFA 1XMDA 1FURA 3NO9A 1Z4QA 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4MUMA 1Z4KA 4L6AA 4V2QA 3UNVA 1C3CA 3BHGA 3U19A 4FFXA 2VL7A 2PTSA 1Z4PX 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2JAOA 2X75A 3OCFA 4YIKA 4APAA 2RJSA 1YFMA 4E88A 1Z4IA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3U13A 3GZHA 1T9HA 1U16A 2PTQA 2QGAB 2D28C 5HW2A 4NFLA 1DCNA 3KDZA 4C5SA 1Q5NA 2JAWA 4V2RA 1XL7A 2FELA 1XMCA 3OCEA 2JARA 3KDYA 1Z4LA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2FENA 2O78A 2PTRA 5D6BA 4MWOA 3BWVA 3R6YA 1TJUA 1W27A 1C3UA 1Q92A 4L57A 4C5UA 4L6CA 1MH9A 1GKMA 2FUSA 1Z4JA 2E9FA 2QVEA 1J3UA 2I7DA 3CRVA 3RD8A 2D27A 2RCNA 3QBPA 4ADMA
chains in the Genus database with same CATH topology
1U15A 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 1DOFA 1YISA 4FLCA 4EFCA 5EYVA 2PFMA 3GTDA 2O7FA 4BAAA 3R6QA 5H8WA 1FUPA 1TJWA 1FUOA 2O7EA 3CRW1 2O7BA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 1XL8A 2J91A 5EYTA 5F92A 2VSFA 2O7DA 2OHYA 1HY1A 4BABA 1I0AA 1HY0A 4A15A 1TJVA 1AUWA 2O6YA 1GK3A 4EEIA 1JSWA 2NYFA 1XMDA 1FURA 3NO9A 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4V2QA 3UNVA 1C3CA 3BHGA 4FFXA 2VL7A 2PTSA 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2X75A 3OCFA 4APAA 2RJSA 1YFMA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3GZHA 1U16A 2PTQA 2QGAB 5HW2A 1DCNA 3KDZA 4C5SA 1Q5NA 4V2RA 1XL7A 1XMCA 3OCEA 3KDYA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2O78A 2PTRA 5D6BA 3R6YA 1TJUA 1W27A 1C3UA 4C5UA 1GKMA 2FUSA 2E9FA 2QVEA 1J3UA 3CRVA 3RD8A 1GK2A 3QBPA 4ADMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U15 A;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  1DOF A;  1YIS A;  4FLC A;  4EFC A;  5EYV A;  2PFM A;  3GTD A;  2O7F A;  4BAA A;  3R6Q A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  2O7B A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  2J91 A;  5EYT A;  5F92 A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  1I0A A;  1HY0 A;  1TJV A;  1AUW A;  2O6Y A;  1GK3 A;  4EEI A;  1JSW A;  2NYF A;  1FUR A;  3NO9 A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  4FFX A;  2PTS A;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2X75 A;  3OCF A;  4APA A;  2RJS A;  1YFM A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3GZH A;  1U16 A;  2PTQ A;  2QGA B;  5HW2 A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  4V2R A;  3OCE A;  3KDY A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2O78 A;  2PTR A;  5D6B A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  4C5U A;  1GKM A;  2FUS A;  2E9F A;  2QVE A;  1J3U A;  3RD8 A;  1GK2 A;  3QBP A;  4ADM A; 
#chains in the Genus database with same CATH topology
 3F4S A;  1U15 A;  4IQJ M;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  2YV5 A;  1DOF A;  4WNL A;  1YIS A;  4FLC A;  4EFC A;  5EYV A;  2PFM A;  3GTD A;  1U0L A;  2O7F A;  4BAA A;  3R6Q A;  5H8W A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  1XLY A;  3CRW 1;  3F4T A;  2O7B A;  1Z4M A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  1XL8 A;  3F4R A;  2J91 A;  1GK2 A;  5EYT A;  4YIH A;  1IW7 D;  5F92 A;  2VSF A;  5M0J A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  5M0I A;  1I0A A;  1HY0 A;  4A15 A;  2JAU A;  1TJV A;  1AUW A;  2O6Y A;  3CI0 K;  1GK3 A;  1Q91 A;  4EEI A;  1JSW A;  2NYF A;  1XMD A;  1FUR A;  3NO9 A;  1Z4Q A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4MUM A;  1Z4K A;  4L6A A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  3U19 A;  4FFX A;  2VL7 A;  2PTS A;  1Z4P X;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2JAO A;  2X75 A;  3OCF A;  4YIK A;  4APA A;  2RJS A;  1YFM A;  4E88 A;  1Z4I A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3U13 A;  3GZH A;  1T9H A;  1U16 A;  2PTQ A;  2QGA B;  2D28 C;  5HW2 A;  4NFL A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  2JAW A;  4V2R A;  1XL7 A;  2FEL A;  1XMC A;  3OCE A;  2JAR A;  3KDY A;  1Z4L A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2FEN A;  2O78 A;  2PTR A;  5D6B A;  4MWO A;  3BWV A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  1Q92 A;  4L57 A;  4C5U A;  4L6C A;  1MH9 A;  1GKM A;  2FUS A;  1Z4J A;  2E9F A;  2QVE A;  1J3U A;  2I7D A;  3CRV A;  3RD8 A;  2D27 A;  2RCN A;  3QBP A;  4ADM A; 
#chains in the Genus database with same CATH homology
 1U15 A;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  1DOF A;  1YIS A;  4FLC A;  4EFC A;  5EYV A;  2PFM A;  3GTD A;  2O7F A;  4BAA A;  3R6Q A;  5H8W A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  3CRW 1;  2O7B A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  1XL8 A;  2J91 A;  5EYT A;  5F92 A;  2VSF A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  1I0A A;  1HY0 A;  4A15 A;  1TJV A;  1AUW A;  2O6Y A;  1GK3 A;  4EEI A;  1JSW A;  2NYF A;  1XMD A;  1FUR A;  3NO9 A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  4FFX A;  2VL7 A;  2PTS A;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2X75 A;  3OCF A;  4APA A;  2RJS A;  1YFM A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3GZH A;  1U16 A;  2PTQ A;  2QGA B;  5HW2 A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  4V2R A;  1XL7 A;  1XMC A;  3OCE A;  3KDY A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2O78 A;  2PTR A;  5D6B A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  4C5U A;  1GKM A;  2FUS A;  2E9F A;  2QVE A;  1J3U A;  3CRV A;  3RD8 A;  1GK2 A;  3QBP A;  4ADM A; 
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