2ZJPS

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (1-3)3H1 (47-49)AH2 (36-44)TIV3 (44-47)S2 (51-54)TIV4 (56-59)S3 (62-66)EMPTYO2 (54-56)S5 (78-85)TIV5 (72-75)TIV7 (87-90)TVIII1 (115-118)TIV14 (138-141)TIV8 (104-107)TIV10 (107-110)TI1 (106-109)TIV15 (142-145)S10 (167-170)S7 (119-123)S9 (159-160)TIV18 (155-158)TII1 (126-129)S8 (146-148)TI3 (163-166)TI2 (148-151)TIV17 (154-157)AH1 (10-15)TIV1 (24-27)S4 (70-71)S6 (93-97)S1 (20-24)Updating...
connected with : NaN
molecule tags Ribosome/antibiotic
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
molecule keywords 50S RIBOSOMAL PROTEIN L33
total genus 15
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 2zjpS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 2zjpS02
4IOCS 1GTSA 5JVGS 1FEUA 1O0CA 4U67S 2ZJRS 1EXDA 1O0BA 4H3SA 1GTRA 5HL7S 1DFUP 5GAEW 1QTQA 3CF5S 4JXZA 1NYLA 4WFAS 2ZJQS 4WFNS 5GAHW 3J7ZV 2ZJPS 2RD2A 4JYZA 4JXXA 1ZJWA 5IZNA 1EUQA 1EUYA 1QRUA 5GAGW 5GADW 5JVHS 4UY88 2HZ7A 1QRSA 3PIOS 3DLLS 4WCES 1B75A 5DM6S 2RE8A 1QRTA 4WFBS 3PIPS 4IO9S 4P2BA 4IOAS 5DM7S 3AIIA 4WF9S 5BNZA 1D6KA
chains in the Genus database with same CATH superfamily
2G6GA 5IP9C 5C44C 2A69A 2L5NA 4A3DC 2R93C 4U67S 1YNNA 3KW2A 4H3SA 3M4OC 2O5JA 1R9TC 2PNWA 5GAHW 1EUQA 1IW7A 1FEUA 4BY1C 3GTKC 4WF9S 4BBSC 5GAGW 3W2VB 2L3UA 4G7HA 1I6HC 5IP7C 2Z0YA 3GTMC 4A3BC 1VHKA 4YFXA 4MEXA 3DLLS 3HOZC 3PO2C 3S1NC 3M3YC 3S16C 1SFOC 2RE8A 1TWFC 4XSZA 3GTQC 3W2WB 4WFBS 2KQ1A 4E8BA 1TWHC 4YFNA 3PIPS 4MEYA 4IOAS 5DM7S 2A68A 3S14C 4KMUA 3RZOC 3GTJC 4AYBD 3RZDC 4A3CC 3GTGC 5BNZA 1QTQA 4G7ZA 2A6HA 4OIQA 5JVGS 1I3QC 1WCMC 1DFUP 3I4MC 1YNJA 4BY7C 2E2HC 4H4KA 3HOUC 1NXZA 4JXZA 2BE5A 4WFAS 2RD2A 4JYZA 2WAQD 3H0GC 3J7ZV 4L69A 5FLMC 3GTLC 2NVXC 1K83C 4UY88 3GTOC 4C3IC 3I4NC 4XSXA 4C3JC 5D4DA 2G5DA 1I50C 4Q5SA 4ZH4A 2YU9C 2JA8C 3K7AC 1SMYA 3S17C 5IYCC 4G7OA 3S1MC 3WODA 4A3IC 2NWAA 4Y52C 4IO9S 1TWCC 3HKZD 4LK1A 4A3JC 2VUMC 4XLNA 2O5IA 2PICA 2ZJPS 1D6KA 2A6EA 4IOCS 1GTSA 2JA5C 4YG2A 3S1QC 1EXDA 1O0BA 3HOVC 5GAEW 3GTPC 4BBRC 3CF5S 4OIPA 3HOWC 4GZYA 3H3VD 4A3GC 3HOYC 1GTRA 2ZJQS 2PI8A 4WFNS 3DXJA 2WB1D 4LK0A 1QRUA 2CW0A 5IYBC 1EUYA 5TMFA 5TMCA 3PIOS 2JA6C 3PO3C 4OIOA 4A3MC 4OIRA 2EGVA 5DM6S 3FKIC 3CZBA 1QRTA 4KN4A 1UDXA 4MQ9A 4QJVA 4OINA 2R92C 4J3CA 2CX8A 5C4XC 5IYDC 2E2IC 4NOIA 1I6VA 5C4JC 4P2BA 4A3FC 3S2DC 4Y7NC 1V6ZA 2EGWA 3S1RC 4LLGA 1TWAC 1Y1VC 2NVYC 3CQZC 2PA8D 2AE0X 4JK1A 4KN7A 1Y1WC 2NVTC 3S15C 3EQLA 1O0CA 4A3KC 4V194 3HOXC 2ZJRS 4XLPA 5HL7S 2R7ZC 3X1LB 4X6AC 2E2JC 2PMZD 1TWGC 1NYLA 1ZJWA 4JXXA 4C3HC 4YFKA 5IZNA 2B63C 5GADW 5JVHS 3S2HC 2HZ7A 4QIWD 1QRSA 1Z85A 1VHYA 4LJZA 2Y0SD 4WCES 3LYWA 4A3EC 2GAEA 4BXXC 1BDFA 2NVQC 4A93C 2KXYA 4C2MC 5C3EC 4Q4ZA 2PPBA 1HQMA 1ZYRA 2KPUA 4A3LC 5HQHA 2JA7C 3AIIA 1B75A 2PJJA
chains in the Genus database with same CATH topology
4IOCS 1GTSA 5JVGS 1FEUA 1O0CA 4V194 4U67S 2ZJRS 1EXDA 1O0BA 4H3SA 1GTRA 5HL7S 4H4KA 5GAEW 1QTQA 3X1LB 1DFUP 3CF5S 4JXZA 1NYLA 4WFAS 2ZJQS 4WFNS 5GAHW 3J7ZV 2ZJPS 2RD2A 4JYZA 4JXXA 1ZJWA 5IZNA 1EUQA 1EUYA 1QRUA 5GAGW 5GADW 3W2VB 5JVHS 2HZ7A 4UY88 1QRSA 3PIOS 3DLLS 4WCES 1B75A 5DM6S 2RE8A 1QRTA 1UDXA 3W2WB 4WFBS 3PIPS 4IO9S 4P2BA 4IOAS 5DM7S 3AIIA 4WF9S 5BNZA 1D6KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOC S;  1GTS A;  5JVG S;  1FEU A;  1O0C A;  4U67 S;  2ZJR S;  1EXD A;  1O0B A;  4H3S A;  1GTR A;  5HL7 S;  1DFU P;  5GAE W;  1QTQ A;  3CF5 S;  4JXZ A;  1NYL A;  4WFA S;  2ZJQ S;  4WFN S;  5GAH W;  3J7Z V;  2ZJP S;  2RD2 A;  4JYZ A;  4JXX A;  1ZJW A;  5IZN A;  1EUQ A;  1EUY A;  1QRU A;  5GAG W;  5GAD W;  5JVH S;  4UY8 8;  2HZ7 A;  1QRS A;  3PIO S;  3DLL S;  4WCE S;  1B75 A;  5DM6 S;  2RE8 A;  1QRT A;  4WFB S;  3PIP S;  4IO9 S;  4P2B A;  4IOA S;  5DM7 S;  3AII A;  4WF9 S;  5BNZ A;  1D6K A; 
#chains in the Genus database with same CATH topology
 2G6G A;  5IP9 C;  5C44 C;  2A69 A;  2L5N A;  4A3D C;  2R93 C;  4U67 S;  1YNN A;  3KW2 A;  4H3S A;  3M4O C;  2O5J A;  1R9T C;  2PNW A;  5GAH W;  1EUQ A;  1IW7 A;  1FEU A;  4BY1 C;  3GTK C;  4WF9 S;  4BBS C;  5GAG W;  3W2V B;  2L3U A;  4G7H A;  1I6H C;  5IP7 C;  2Z0Y A;  3GTM C;  4A3B C;  1VHK A;  4YFX A;  4MEX A;  3DLL S;  3HOZ C;  3PO2 C;  3S1N C;  3M3Y C;  3S16 C;  1SFO C;  2RE8 A;  1TWF C;  4XSZ A;  3GTQ C;  3W2W B;  4WFB S;  2KQ1 A;  4E8B A;  1TWH C;  4YFN A;  3PIP S;  4MEY A;  4IOA S;  5DM7 S;  2A68 A;  3S14 C;  4KMU A;  3RZO C;  3GTJ C;  4AYB D;  3RZD C;  4A3C C;  3GTG C;  5BNZ A;  1QTQ A;  4G7Z A;  2A6H A;  4OIQ A;  5JVG S;  1I3Q C;  1WCM C;  1DFU P;  3I4M C;  1YNJ A;  4BY7 C;  2E2H C;  4H4K A;  3HOU C;  1NXZ A;  4JXZ A;  2BE5 A;  4WFA S;  2RD2 A;  4JYZ A;  2WAQ D;  3H0G C;  3J7Z V;  4L69 A;  5FLM C;  3GTL C;  2NVX C;  1K83 C;  4UY8 8;  3GTO C;  4C3I C;  3I4N C;  4XSX A;  4C3J C;  5D4D A;  2G5D A;  1I50 C;  4Q5S A;  4ZH4 A;  2YU9 C;  2JA8 C;  3K7A C;  1SMY A;  3S17 C;  5IYC C;  4G7O A;  3S1M C;  3WOD A;  4A3I C;  2NWA A;  4Y52 C;  4IO9 S;  1TWC C;  3HKZ D;  4LK1 A;  4A3J C;  2VUM C;  4XLN A;  2O5I A;  2PIC A;  2ZJP S;  1D6K A;  2A6E A;  4IOC S;  1GTS A;  2JA5 C;  4YG2 A;  3S1Q C;  1EXD A;  1O0B A;  3HOV C;  5GAE W;  3GTP C;  4BBR C;  3CF5 S;  4OIP A;  3HOW C;  4GZY A;  3H3V D;  4A3G C;  3HOY C;  1GTR A;  2ZJQ S;  2PI8 A;  4WFN S;  3DXJ A;  2WB1 D;  4LK0 A;  1QRU A;  2CW0 A;  5IYB C;  1EUY A;  5TMF A;  5TMC A;  3PIO S;  2JA6 C;  3PO3 C;  4OIO A;  4A3M C;  4OIR A;  2EGV A;  5DM6 S;  3FKI C;  3CZB A;  1QRT A;  4KN4 A;  1UDX A;  4MQ9 A;  4QJV A;  4OIN A;  2R92 C;  4J3C A;  2CX8 A;  5C4X C;  5IYD C;  2E2I C;  4NOI A;  1I6V A;  5C4J C;  4P2B A;  4A3F C;  3S2D C;  4Y7N C;  1V6Z A;  2EGW A;  3S1R C;  4LLG A;  1TWA C;  1Y1V C;  2NVY C;  3CQZ C;  2PA8 D;  2AE0 X;  4JK1 A;  4KN7 A;  1Y1W C;  2NVT C;  3S15 C;  3EQL A;  1O0C A;  4A3K C;  4V19 4;  3HOX C;  2ZJR S;  4XLP A;  5HL7 S;  2R7Z C;  3X1L B;  4X6A C;  2E2J C;  2PMZ D;  1TWG C;  1NYL A;  1ZJW A;  4JXX A;  4C3H C;  4YFK A;  5IZN A;  2B63 C;  5GAD W;  5JVH S;  3S2H C;  2HZ7 A;  4QIW D;  1QRS A;  1Z85 A;  1VHY A;  4LJZ A;  2Y0S D;  4WCE S;  3LYW A;  4A3E C;  2GAE A;  4BXX C;  1BDF A;  2NVQ C;  4A93 C;  2KXY A;  4C2M C;  5C3E C;  4Q4Z A;  2PPB A;  1HQM A;  1ZYR A;  2KPU A;  4A3L C;  5HQH A;  2JA7 C;  3AII A;  1B75 A;  2PJJ A; 
#chains in the Genus database with same CATH homology
 4IOC S;  1GTS A;  5JVG S;  1FEU A;  1O0C A;  4V19 4;  4U67 S;  2ZJR S;  1EXD A;  1O0B A;  4H3S A;  1GTR A;  5HL7 S;  4H4K A;  5GAE W;  1QTQ A;  3X1L B;  1DFU P;  3CF5 S;  4JXZ A;  1NYL A;  4WFA S;  2ZJQ S;  4WFN S;  5GAH W;  3J7Z V;  2ZJP S;  2RD2 A;  4JYZ A;  4JXX A;  1ZJW A;  5IZN A;  1EUQ A;  1EUY A;  1QRU A;  5GAG W;  5GAD W;  3W2V B;  5JVH S;  2HZ7 A;  4UY8 8;  1QRS A;  3PIO S;  3DLL S;  4WCE S;  1B75 A;  5DM6 S;  2RE8 A;  1QRT A;  1UDX A;  3W2W B;  4WFB S;  3PIP S;  4IO9 S;  4P2B A;  4IOA S;  5DM7 S;  3AII A;  4WF9 S;  5BNZ A;  1D6K A; 
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