3BHGA

Crystal structure of adenylosuccinate lyase from legionella pneumophila
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
454
structure length
448
Chain Sequence
LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQLVKAFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of adenylosuccinate lyase from Legionella pneumophila.
rcsb
molecule tags Lyase
source organism Legionella pneumophila subsp. pneumophila str. philadelphia 1
molecule keywords Adenylosuccinate lyase
total genus 163
structure length 448
sequence length 454
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3bhgA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3bhgA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3bhgA02
1JSWA 3R6YA 1YFEA 2E9FA 4C5SA 4C5UA 3OCEA 3KDZA 1FUPA 1AUWA 5D6BA 3BHGA 2RJRA 4C5RA 2VD6A 4BABA 2PFMA 2O78A 1XWOA 5F91A 4BAAA 2O7DA 1FURA 1U15A 4HGVA 1TJWA 2X75A 4MX2A 1GKMA 2QVEA 4APBA 3KDYA 1TJ7A 1DOFA 2O7BA 3CZOA 4NLEA 3UNVA 1HY1A 1HY0A 1K62A 4APAA 3TV2A 2O7EA 1RE5A 1GK3A 3C8TA 2HVGA 4V2RA 1YFMA 5HW2A 1DCNA 3E04A 1Y2MA 2O7FA 2J91A 2PTRA 3R6QA 4ADMA 1GKJA 2NYNA 1J3UA 3GZHA 1C3CA 2NYFA 3GTDA 2O6YA 2PTSA 4NSLA 2FUSA 1VDKA 3RRPA 4EEIA 2YIIA 1TJUA 4V2QA 1W27A 4C6GA 1U16A 3NZ4A 1GK2A 2QGAB 1YISA 1K7WA 4FLCA 2RJSA 1TJVA 1T6JA 1FUOA 3R6VA 2OHYA 3OCFA 3NO9A 1T6PA 2PTQA 1B8FA 1EB4A 3QBPA 1C3UA 5EYVA 4EFCA 4ADLA 4FFXA 5EYTA 1I0AA 3RD8A 1Q5NA 1FUQA 4CQ5A 1KQ7A 5F92A
chains in the Genus database with same CATH superfamily
1JSWA 3R6YA 1YFEA 2E9FA 2JARA 4C5SA 1Z4KA 4C5UA 3OCEA 3KDZA 1FUPA 1AUWA 2VL7A 5D6BA 3BHGA 2RJRA 4C5RA 2VD6A 1Z4IA 4BABA 2PFMA 2O78A 1XWOA 5F91A 4BAAA 2O7DA 3F4SA 2FELA 1FURA 1U15A 4HGVA 1TJWA 2X75A 4MX2A 3U19A 1XMDA 1GKMA 2QVEA 4APBA 3KDYA 1TJ7A 1DOFA 1Q92A 2O7BA 2RCNA 4MUMA 3CZOA 3U13A 4L57A 1Q91A 4A15A 2VSFA 5M0IA 4NLEA 3F4RA 3UNVA 1Z4MA 1HY1A 3F4TA 3BWVA 1HY0A 1K62A 4APAA 3TV2A 2O7EA 1RE5A 1GK3A 3C8TA 2HVGA 4V2RA 1YFMA 1T9HA 1IW7D 1DCNA 2JAWA 3E04A 5HW2A 1XLYA 1Y2MA 2O7FA 4MWOA 1Z4PX 2J91A 2PTRA 3R6QA 4ADMA 2D28C 1GKJA 2NYNA 1J3UA 3GZHA 1C3CA 4YIKA 2NYFA 2I7DA 3GTDA 1Z4LA 4IQJM 2O6YA 2PTSA 4NSLA 5M0JA 2FUSA 1XL8A 2FENA 1MH9A 1VDKA 3RRPA 4EEIA 1XL7A 2YIIA 4WNLA 1TJUA 4V2QA 1W27A 4C6GA 1U16A 3NZ4A 1GK2A 2JAOA 2QGAB 1YISA 1K7WA 4FLCA 1Z4JA 2RJSA 1TJVA 2JAUA 1T6JA 1FUOA 3R6VA 1XMCA 2OHYA 3OCFA 3CRVA 3NO9A 2D27A 4L6CA 1T6PA 2PTQA 1B8FA 1EB4A 3QBPA 1C3UA 3CI0K 2YV5A 1U0LA 5EYVA 4EFCA 1Z4QA 3CRW1 4ADLA 4FFXA 5H8WA 4NFLA 4E88A 5EYTA 4YIHA 1I0AA 3RD8A 1Q5NA 1FUQA 4CQ5A 1KQ7A 5F92A 4L6AA
chains in the Genus database with same CATH topology
1JSWA 3R6YA 1YFEA 2E9FA 4C5SA 4C5UA 3OCEA 3KDZA 1FUPA 1AUWA 5D6BA 3BHGA 2RJRA 4C5RA 2VD6A 4BABA 2PFMA 2O78A 1XWOA 5F91A 4BAAA 2O7DA 1FURA 1U15A 4HGVA 1TJWA 2X75A 4MX2A 1GKMA 2QVEA 4APBA 3KDYA 1TJ7A 1DOFA 2O7BA 3CZOA 4NLEA 3UNVA 1HY1A 1HY0A 1K62A 4APAA 3TV2A 2O7EA 1RE5A 1GK3A 3C8TA 2HVGA 4V2RA 1YFMA 5HW2A 1DCNA 3E04A 1Y2MA 2O7FA 2J91A 2PTRA 3R6QA 4ADMA 1GKJA 2NYNA 1J3UA 3GZHA 1C3CA 2NYFA 3GTDA 2O6YA 2PTSA 4NSLA 2FUSA 1VDKA 3RRPA 4EEIA 2YIIA 1TJUA 4V2QA 1W27A 4C6GA 1U16A 3NZ4A 1GK2A 2QGAB 1YISA 1K7WA 4FLCA 2RJSA 1TJVA 1T6JA 1FUOA 3R6VA 2OHYA 3OCFA 3NO9A 1T6PA 2PTQA 1B8FA 1EB4A 3QBPA 1C3UA 5EYVA 4EFCA 4ADLA 4FFXA 5EYTA 1I0AA 3RD8A 1Q5NA 1FUQA 4CQ5A 1KQ7A 5F92A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JSW A;  3R6Y A;  1YFE A;  2E9F A;  4C5S A;  4C5U A;  3OCE A;  3KDZ A;  1FUP A;  1AUW A;  5D6B A;  3BHG A;  2RJR A;  4C5R A;  2VD6 A;  4BAB A;  2PFM A;  2O78 A;  1XWO A;  5F91 A;  4BAA A;  2O7D A;  1FUR A;  1U15 A;  4HGV A;  1TJW A;  2X75 A;  4MX2 A;  1GKM A;  2QVE A;  4APB A;  3KDY A;  1TJ7 A;  1DOF A;  2O7B A;  3CZO A;  4NLE A;  3UNV A;  1HY1 A;  1HY0 A;  1K62 A;  4APA A;  3TV2 A;  2O7E A;  1RE5 A;  1GK3 A;  3C8T A;  2HVG A;  4V2R A;  1YFM A;  5HW2 A;  1DCN A;  3E04 A;  1Y2M A;  2O7F A;  2J91 A;  2PTR A;  3R6Q A;  4ADM A;  1GKJ A;  2NYN A;  1J3U A;  3GZH A;  1C3C A;  2NYF A;  3GTD A;  2O6Y A;  2PTS A;  4NSL A;  2FUS A;  1VDK A;  3RRP A;  4EEI A;  2YII A;  1TJU A;  4V2Q A;  1W27 A;  4C6G A;  1U16 A;  3NZ4 A;  1GK2 A;  2QGA B;  1YIS A;  1K7W A;  4FLC A;  2RJS A;  1TJV A;  1T6J A;  1FUO A;  3R6V A;  2OHY A;  3OCF A;  3NO9 A;  1T6P A;  2PTQ A;  1B8F A;  1EB4 A;  3QBP A;  1C3U A;  5EYV A;  4EFC A;  4ADL A;  4FFX A;  5EYT A;  1I0A A;  3RD8 A;  1Q5N A;  1FUQ A;  4CQ5 A;  1KQ7 A;  5F92 A; 
#chains in the Genus database with same CATH topology
 1JSW A;  3R6Y A;  1YFE A;  2E9F A;  2JAR A;  4C5S A;  1Z4K A;  4C5U A;  3OCE A;  3KDZ A;  1FUP A;  1AUW A;  2VL7 A;  5D6B A;  3BHG A;  2RJR A;  4C5R A;  2VD6 A;  1Z4I A;  4BAB A;  2PFM A;  2O78 A;  1XWO A;  5F91 A;  4BAA A;  2O7D A;  3F4S A;  2FEL A;  1FUR A;  1U15 A;  4HGV A;  1TJW A;  2X75 A;  4MX2 A;  3U19 A;  1XMD A;  1GKM A;  2QVE A;  4APB A;  3KDY A;  1TJ7 A;  1DOF A;  1Q92 A;  2O7B A;  2RCN A;  4MUM A;  3CZO A;  3U13 A;  4L57 A;  1Q91 A;  4A15 A;  2VSF A;  5M0I A;  4NLE A;  3F4R A;  3UNV A;  1Z4M A;  1HY1 A;  3F4T A;  3BWV A;  1HY0 A;  1K62 A;  4APA A;  3TV2 A;  2O7E A;  1RE5 A;  1GK3 A;  3C8T A;  2HVG A;  4V2R A;  1YFM A;  1T9H A;  1IW7 D;  1DCN A;  2JAW A;  3E04 A;  5HW2 A;  1XLY A;  1Y2M A;  2O7F A;  4MWO A;  1Z4P X;  2J91 A;  2PTR A;  3R6Q A;  4ADM A;  2D28 C;  1GKJ A;  2NYN A;  1J3U A;  3GZH A;  1C3C A;  4YIK A;  2NYF A;  2I7D A;  3GTD A;  1Z4L A;  4IQJ M;  2O6Y A;  2PTS A;  4NSL A;  5M0J A;  2FUS A;  1XL8 A;  2FEN A;  1MH9 A;  1VDK A;  3RRP A;  4EEI A;  1XL7 A;  2YII A;  4WNL A;  1TJU A;  4V2Q A;  1W27 A;  4C6G A;  1U16 A;  3NZ4 A;  1GK2 A;  2JAO A;  2QGA B;  1YIS A;  1K7W A;  4FLC A;  1Z4J A;  2RJS A;  1TJV A;  2JAU A;  1T6J A;  1FUO A;  3R6V A;  1XMC A;  2OHY A;  3OCF A;  3CRV A;  3NO9 A;  2D27 A;  4L6C A;  1T6P A;  2PTQ A;  1B8F A;  1EB4 A;  3QBP A;  1C3U A;  3CI0 K;  2YV5 A;  1U0L A;  5EYV A;  4EFC A;  1Z4Q A;  3CRW 1;  4ADL A;  4FFX A;  5H8W A;  4NFL A;  4E88 A;  5EYT A;  4YIH A;  1I0A A;  3RD8 A;  1Q5N A;  1FUQ A;  4CQ5 A;  1KQ7 A;  5F92 A;  4L6A A; 
#chains in the Genus database with same CATH homology
 1JSW A;  3R6Y A;  1YFE A;  2E9F A;  4C5S A;  4C5U A;  3OCE A;  3KDZ A;  1FUP A;  1AUW A;  5D6B A;  3BHG A;  2RJR A;  4C5R A;  2VD6 A;  4BAB A;  2PFM A;  2O78 A;  1XWO A;  5F91 A;  4BAA A;  2O7D A;  1FUR A;  1U15 A;  4HGV A;  1TJW A;  2X75 A;  4MX2 A;  1GKM A;  2QVE A;  4APB A;  3KDY A;  1TJ7 A;  1DOF A;  2O7B A;  3CZO A;  4NLE A;  3UNV A;  1HY1 A;  1HY0 A;  1K62 A;  4APA A;  3TV2 A;  2O7E A;  1RE5 A;  1GK3 A;  3C8T A;  2HVG A;  4V2R A;  1YFM A;  5HW2 A;  1DCN A;  3E04 A;  1Y2M A;  2O7F A;  2J91 A;  2PTR A;  3R6Q A;  4ADM A;  1GKJ A;  2NYN A;  1J3U A;  3GZH A;  1C3C A;  2NYF A;  3GTD A;  2O6Y A;  2PTS A;  4NSL A;  2FUS A;  1VDK A;  3RRP A;  4EEI A;  2YII A;  1TJU A;  4V2Q A;  1W27 A;  4C6G A;  1U16 A;  3NZ4 A;  1GK2 A;  2QGA B;  1YIS A;  1K7W A;  4FLC A;  2RJS A;  1TJV A;  1T6J A;  1FUO A;  3R6V A;  2OHY A;  3OCF A;  3NO9 A;  1T6P A;  2PTQ A;  1B8F A;  1EB4 A;  3QBP A;  1C3U A;  5EYV A;  4EFC A;  4ADL A;  4FFX A;  5EYT A;  1I0A A;  3RD8 A;  1Q5N A;  1FUQ A;  4CQ5 A;  1KQ7 A;  5F92 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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