3C8T | Genus

Total Genus 165

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	165
sequence length	438
structure length	423
Chain Sequence	PLYGRSFADDKMRELFSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRDDTEIVGYPILPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGVPSITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPNPVSCELILAGARIVRNHATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAGAMVDNVLGGR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Mesorhizobium sp.
publication title	Crystal structure of fumarate lyase from Mesorhizobium sp. BNC1. rcsb
molecule keywords	Fumarate lyase
total genus	165
structure length	423
sequence length	438
ec nomenclature
pdb deposition date	2008-02-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00206	Lyase_1	Lyase
A	PF10397	ADSL_C	Adenylosuccinate lyase C-terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.40.30	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase Protein R1; domain 1	Fumarase/aspartase (C-terminal domain)	3c8tA03
1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C; Chain B, domain 1	Fumarase/aspartase (N-terminal domain)	3c8tA01
1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C; Chain A, domain 2	Fumarase/aspartase (Central domain)	3c8tA02

2HVGA 1FUQA 1K62A 1I0AA 4APAA 4EEIA 1DCNA 1GKJA 4FLCA 1YISA 1Q5NA 4BAAA 1GK3A 4C6GA 2O7DA 4HGVA 3R6YA 4CQ5A 1T6JA 1TJUA 3UNVA 3E04A 2RJRA 3OCEA 2FUSA 2PTQA 2X75A 3RRPA 2PFMA 1DOFA 3QBPA 3CZOA 1TJVA 5F91A 1HY1A 1FUPA 4C5SA 3TV2A 4ADMA 4BABA 2VD6A 4V2RA 5F92A 3R6QA 4MX2A 1B8FA 4V2QA 2QGAB 1Y2MA 1W27A 1RE5A 3KDYA 3GTDA 1JSWA 2O6YA 3OCFA 2NYFA 3C8TA 2E9FA 3NO9A 5D6BA 2O78A 1J3UA 1VDKA 3R6VA 5EYTA 3RD8A 2PTRA 1TJWA 4APBA 5HW2A 2O7EA 2QVEA 2RJSA 1TJ7A 2PTSA 3GZHA 4C5UA 1C3CA 4NSLA 1C3UA 2NYNA 1XWOA 4NLEA 1AUWA 4C5RA 2YIIA 1FUOA 1HY0A 2J91A 1EB4A 1YFEA 3BHGA 2O7BA 1KQ7A 3NZ4A 1U16A 1YFMA 1U15A 4FFXA 1FURA 1K7WA 1GKMA 2OHYA 1T6PA 1GK2A 4EFCA 3KDZA 2O7FA 4ADLA 5EYVA
chains in the Genus database with same CATH superfamily

1Z4LA 2HVGA 2RCNA 1FUQA 2I7DA 1XL7A 1K62A 3F4RA 1I0AA 4APAA 3CI0K 4EEIA 1DCNA 2JAUA 2JARA 1GKJA 1XMDA 1XMCA 4FLCA 1YISA 1Q5NA 4L6CA 5H8WA 4BAAA 1GK3A 2JAWA 2O7DA 4C6GA 4HGVA 3R6YA 4CQ5A 2VSFA 1T6JA 1TJUA 1Z4MA 3UNVA 3E04A 2RJRA 4MUMA 3OCEA 2FUSA 3U19A 4YIHA 2PTQA 2X75A 3RRPA 2PFMA 1DOFA 2YV5A 3QBPA 3CZOA 1MH9A 1TJVA 5F91A 1HY1A 1FUPA 2VL7A 1XLYA 4C5SA 3TV2A 4ADMA 4BABA 2VD6A 2FELA 4V2RA 5F92A 3R6QA 4MX2A 1U0LA 1B8FA 1XL8A 2QGAB 4V2QA 1Z4PX 1Y2MA 1W27A 1RE5A 3KDYA 3GTDA 1JSWA 2O6YA 3OCFA 2NYFA 3C8TA 2E9FA 3NO9A 5D6BA 2D28C 2O78A 4IQJM 1J3UA 1VDKA 3F4TA 3R6VA 5EYTA 3RD8A 2PTRA 2D27A 5M0IA 1TJWA 4NFLA 4APBA 3U13A 5HW2A 2O7EA 2QVEA 4E88A 2RJSA 3CRW1 1TJ7A 4YIKA 2PTSA 3GZHA 3BWVA 4C5UA 1C3CA 4NSLA 1C3UA 3CRVA 2JAOA 2NYNA 1Z4JA 1XWOA 4NLEA 1AUWA 4C5RA 3F4SA 2YIIA 1Z4QA 1FUOA 1HY0A 2J91A 1Q92A 1Q91A 4L6AA 1Z4IA 1EB4A 1YFEA 4A15A 3BHGA 2O7BA 1KQ7A 3NZ4A 1T9HA 1U16A 5M0JA 2FENA 1Z4KA 1YFMA 4WNLA 1U15A 4FFXA 1FURA 1K7WA 1GKMA 2OHYA 1T6PA 1GK2A 4EFCA 4L57A 3KDZA 4MWOA 2O7FA 4ADLA 5EYVA 1IW7D
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HVG A;  1FUQ A;  1K62 A;  1I0A A;  4APA A;  4EEI A;  1DCN A;  1GKJ A;  4FLC A;  1YIS A;  1Q5N A;  4BAA A;  1GK3 A;  4C6G A;  2O7D A;  4HGV A;  3R6Y A;  4CQ5 A;  1T6J A;  1TJU A;  3UNV A;  3E04 A;  2RJR A;  3OCE A;  2FUS A;  2PTQ A;  2X75 A;  3RRP A;  2PFM A;  1DOF A;  3QBP A;  3CZO A;  1TJV A;  5F91 A;  1HY1 A;  1FUP A;  4C5S A;  3TV2 A;  4ADM A;  4BAB A;  2VD6 A;  4V2R A;  5F92 A;  3R6Q A;  4MX2 A;  1B8F A;  4V2Q A;  2QGA B;  1Y2M A;  1W27 A;  1RE5 A;  3KDY A;  3GTD A;  1JSW A;  2O6Y A;  3OCF A;  2NYF A;  3C8T A;  2E9F A;  3NO9 A;  5D6B A;  2O78 A;  1J3U A;  1VDK A;  3R6V A;  5EYT A;  3RD8 A;  2PTR A;  1TJW A;  4APB A;  5HW2 A;  2O7E A;  2QVE A;  2RJS A;  1TJ7 A;  2PTS A;  3GZH A;  4C5U A;  1C3C A;  4NSL A;  1C3U A;  2NYN A;  1XWO A;  4NLE A;  1AUW A;  4C5R A;  2YII A;  1FUO A;  1HY0 A;  2J91 A;  1EB4 A;  1YFE A;  3BHG A;  2O7B A;  1KQ7 A;  3NZ4 A;  1U16 A;  1YFM A;  1U15 A;  4FFX A;  1FUR A;  1K7W A;  1GKM A;  2OHY A;  1T6P A;  1GK2 A;  4EFC A;  3KDZ A;  2O7F A;  4ADL A;  5EYV A; 
#chains in the Genus database with same CATH topology
 1Z4L A;  2HVG A;  2RCN A;  1FUQ A;  2I7D A;  1XL7 A;  1K62 A;  3F4R A;  1I0A A;  4APA A;  3CI0 K;  4EEI A;  1DCN A;  2JAU A;  2JAR A;  1GKJ A;  1XMD A;  1XMC A;  4FLC A;  1YIS A;  1Q5N A;  4L6C A;  5H8W A;  4BAA A;  1GK3 A;  2JAW A;  2O7D A;  4C6G A;  4HGV A;  3R6Y A;  4CQ5 A;  2VSF A;  1T6J A;  1TJU A;  1Z4M A;  3UNV A;  3E04 A;  2RJR A;  4MUM A;  3OCE A;  2FUS A;  3U19 A;  4YIH A;  2PTQ A;  2X75 A;  3RRP A;  2PFM A;  1DOF A;  2YV5 A;  3QBP A;  3CZO A;  1MH9 A;  1TJV A;  5F91 A;  1HY1 A;  1FUP A;  2VL7 A;  1XLY A;  4C5S A;  3TV2 A;  4ADM A;  4BAB A;  2VD6 A;  2FEL A;  4V2R A;  5F92 A;  3R6Q A;  4MX2 A;  1U0L A;  1B8F A;  1XL8 A;  2QGA B;  4V2Q A;  1Z4P X;  1Y2M A;  1W27 A;  1RE5 A;  3KDY A;  3GTD A;  1JSW A;  2O6Y A;  3OCF A;  2NYF A;  3C8T A;  2E9F A;  3NO9 A;  5D6B A;  2D28 C;  2O78 A;  4IQJ M;  1J3U A;  1VDK A;  3F4T A;  3R6V A;  5EYT A;  3RD8 A;  2PTR A;  2D27 A;  5M0I A;  1TJW A;  4NFL A;  4APB A;  3U13 A;  5HW2 A;  2O7E A;  2QVE A;  4E88 A;  2RJS A;  3CRW 1;  1TJ7 A;  4YIK A;  2PTS A;  3GZH A;  3BWV A;  4C5U A;  1C3C A;  4NSL A;  1C3U A;  3CRV A;  2JAO A;  2NYN A;  1Z4J A;  1XWO A;  4NLE A;  1AUW A;  4C5R A;  3F4S A;  2YII A;  1Z4Q A;  1FUO A;  1HY0 A;  2J91 A;  1Q92 A;  1Q91 A;  4L6A A;  1Z4I A;  1EB4 A;  1YFE A;  4A15 A;  3BHG A;  2O7B A;  1KQ7 A;  3NZ4 A;  1T9H A;  1U16 A;  5M0J A;  2FEN A;  1Z4K A;  1YFM A;  4WNL A;  1U15 A;  4FFX A;  1FUR A;  1K7W A;  1GKM A;  2OHY A;  1T6P A;  1GK2 A;  4EFC A;  4L57 A;  3KDZ A;  4MWO A;  2O7F A;  4ADL A;  5EYV A;  1IW7 D; 
#chains in the Genus database with same CATH homology
 2HVG A;  1FUQ A;  1K62 A;  1I0A A;  4APA A;  4EEI A;  1DCN A;  1GKJ A;  4FLC A;  1YIS A;  1Q5N A;  4BAA A;  1GK3 A;  4C6G A;  2O7D A;  4HGV A;  3R6Y A;  4CQ5 A;  1T6J A;  1TJU A;  3UNV A;  3E04 A;  2RJR A;  3OCE A;  2FUS A;  2PTQ A;  2X75 A;  3RRP A;  2PFM A;  1DOF A;  3QBP A;  3CZO A;  1TJV A;  5F91 A;  1HY1 A;  1FUP A;  4C5S A;  3TV2 A;  4ADM A;  4BAB A;  2VD6 A;  4V2R A;  5F92 A;  3R6Q A;  4MX2 A;  1B8F A;  4V2Q A;  2QGA B;  1Y2M A;  1W27 A;  1RE5 A;  3KDY A;  3GTD A;  1JSW A;  2O6Y A;  3OCF A;  2NYF A;  3C8T A;  2E9F A;  3NO9 A;  5D6B A;  2O78 A;  1J3U A;  1VDK A;  3R6V A;  5EYT A;  3RD8 A;  2PTR A;  1TJW A;  4APB A;  5HW2 A;  2O7E A;  2QVE A;  2RJS A;  1TJ7 A;  2PTS A;  3GZH A;  4C5U A;  1C3C A;  4NSL A;  1C3U A;  2NYN A;  1XWO A;  4NLE A;  1AUW A;  4C5R A;  2YII A;  1FUO A;  1HY0 A;  2J91 A;  1EB4 A;  1YFE A;  3BHG A;  2O7B A;  1KQ7 A;  3NZ4 A;  1U16 A;  1YFM A;  1U15 A;  4FFX A;  1FUR A;  1K7W A;  1GKM A;  2OHY A;  1T6P A;  1GK2 A;  4EFC A;  3KDZ A;  2O7F A;  4ADL A;  5EYV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3C8TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations