3OCFA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
444
Chain Sequence
TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
rcsb
molecule tags Lyase
source organism Brucella melitensis
molecule keywords Fumarate lyase:Delta crystallin
total genus 171
structure length 444
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3ocfA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3ocfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3ocfA02
1Y2MA 2O7FA 3QBPA 1K7WA 1GKMA 2PTSA 1Q5NA 1HY0A 1B8FA 1AUWA 2O7DA 1FUQA 5F92A 1RE5A 1YISA 4V2QA 4EFCA 3NO9A 1TJUA 2RJRA 3OCEA 3GTDA 2QGAB 1U15A 3RD8A 1JSWA 4NLEA 2NYNA 2NYFA 1FUOA 3R6YA 2VD6A 3OCFA 1DCNA 2FUSA 3KDYA 5D6BA 3GZHA 1YFMA 1XWOA 1W27A 1C3CA 5EYTA 1K62A 2O78A 4BABA 1DOFA 1VDKA 1GKJA 4ADLA 4C5UA 4C6GA 4C5SA 1GK2A 3CZOA 1T6PA 1FURA 4C5RA 4BAAA 4APBA 3C8TA 5EYVA 1KQ7A 2PFMA 4FLCA 4ADMA 1GK3A 1J3UA 2E9FA 4V2RA 2O7BA 5HW2A 2QVEA 2PTQA 3TV2A 3KDZA 1U16A 4EEIA 3R6QA 4NSLA 4APAA 1TJ7A 2OHYA 2O6YA 2YIIA 1YFEA 1T6JA 1I0AA 1EB4A 4MX2A 3NZ4A 3UNVA 1TJWA 2PTRA 4HGVA 3R6VA 1C3UA 2X75A 2HVGA 2RJSA 1TJVA 3RRPA 2J91A 1FUPA 3E04A 1HY1A 4FFXA 2O7EA 4CQ5A 3BHGA 5F91A
chains in the Genus database with same CATH superfamily
1Y2MA 2O7FA 2JARA 1Z4PX 3QBPA 2VL7A 1K7WA 2JAWA 5F91A 1GKMA 2PTSA 1Q5NA 1HY0A 1B8FA 1AUWA 2O7DA 1FUQA 3F4SA 5F92A 1XL8A 1RE5A 1YISA 4V2QA 4L57A 4EFCA 3NO9A 1TJUA 2RJRA 2FENA 3CRVA 4MUMA 3U13A 3OCEA 3GTDA 1Z4IA 2QGAB 1U15A 3RD8A 1JSWA 2JAUA 3BWVA 4NLEA 2VSFA 2NYNA 4WNLA 2NYFA 1Q91A 1XL7A 1XMDA 1FUOA 3R6YA 2VD6A 3OCFA 1DCNA 2FUSA 3KDYA 5D6BA 2RCNA 3GZHA 4L6AA 1YFMA 1XWOA 1W27A 1C3CA 5EYTA 1K62A 2O78A 4BABA 1DOFA 1VDKA 4A15A 1GKJA 3CI0K 4ADLA 5M0IA 4C5UA 3BHGA 4C6GA 4C5SA 1GK2A 3CZOA 1T6PA 1FURA 1XMCA 4L6CA 4C5RA 5H8WA 4MWOA 3U19A 4APBA 4BAAA 3C8TA 5EYVA 1KQ7A 2PFMA 4FLCA 4ADMA 1GK3A 4NFLA 1J3UA 2E9FA 4V2RA 4YIHA 2O7BA 5HW2A 2QVEA 2PTQA 3TV2A 1XLYA 2D27A 3KDZA 1U16A 2JAOA 4EEIA 3R6QA 2YV5A 4NSLA 4APAA 1TJ7A 4IQJM 2OHYA 2O6YA 3CRW1 2YIIA 5M0JA 1Z4LA 1YFEA 1T9HA 1Z4QA 1I0AA 1T6JA 1EB4A 4MX2A 3NZ4A 3UNVA 1TJWA 1Z4MA 4YIKA 2PTRA 1Z4KA 1Z4JA 4HGVA 1IW7D 4E88A 2FELA 3R6VA 1C3UA 2X75A 2HVGA 2RJSA 3F4TA 1TJVA 3RRPA 2J91A 1Q92A 1FUPA 1U0LA 3E04A 2I7DA 3F4RA 1HY1A 4FFXA 2O7EA 4CQ5A 1MH9A 2D28C
chains in the Genus database with same CATH topology
1Y2MA 2O7FA 3QBPA 1K7WA 1GKMA 2PTSA 1Q5NA 1HY0A 1B8FA 1AUWA 2O7DA 1FUQA 5F92A 1RE5A 1YISA 4V2QA 4EFCA 3NO9A 1TJUA 2RJRA 3OCEA 3GTDA 2QGAB 1U15A 3RD8A 1JSWA 4NLEA 2NYNA 2NYFA 1FUOA 3R6YA 2VD6A 3OCFA 1DCNA 2FUSA 3KDYA 5D6BA 3GZHA 1YFMA 1XWOA 1W27A 1C3CA 5EYTA 1K62A 2O78A 4BABA 1DOFA 1VDKA 1GKJA 4ADLA 4C5UA 4C6GA 4C5SA 1GK2A 3CZOA 1T6PA 1FURA 4C5RA 4BAAA 4APBA 3C8TA 5EYVA 1KQ7A 2PFMA 4FLCA 4ADMA 1GK3A 1J3UA 2E9FA 4V2RA 2O7BA 5HW2A 2QVEA 2PTQA 3TV2A 3KDZA 1U16A 4EEIA 3R6QA 4NSLA 4APAA 1TJ7A 2OHYA 2O6YA 2YIIA 1YFEA 1T6JA 1I0AA 1EB4A 4MX2A 3NZ4A 3UNVA 1TJWA 2PTRA 4HGVA 3R6VA 1C3UA 2X75A 2HVGA 2RJSA 1TJVA 3RRPA 2J91A 1FUPA 3E04A 1HY1A 4FFXA 2O7EA 4CQ5A 3BHGA 5F91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y2M A;  2O7F A;  3QBP A;  1K7W A;  1GKM A;  2PTS A;  1Q5N A;  1HY0 A;  1B8F A;  1AUW A;  2O7D A;  1FUQ A;  5F92 A;  1RE5 A;  1YIS A;  4V2Q A;  4EFC A;  3NO9 A;  1TJU A;  2RJR A;  3OCE A;  3GTD A;  2QGA B;  1U15 A;  3RD8 A;  1JSW A;  4NLE A;  2NYN A;  2NYF A;  1FUO A;  3R6Y A;  2VD6 A;  3OCF A;  1DCN A;  2FUS A;  3KDY A;  5D6B A;  3GZH A;  1YFM A;  1XWO A;  1W27 A;  1C3C A;  5EYT A;  1K62 A;  2O78 A;  4BAB A;  1DOF A;  1VDK A;  1GKJ A;  4ADL A;  4C5U A;  4C6G A;  4C5S A;  1GK2 A;  3CZO A;  1T6P A;  1FUR A;  4C5R A;  4BAA A;  4APB A;  3C8T A;  5EYV A;  1KQ7 A;  2PFM A;  4FLC A;  4ADM A;  1GK3 A;  1J3U A;  2E9F A;  4V2R A;  2O7B A;  5HW2 A;  2QVE A;  2PTQ A;  3TV2 A;  3KDZ A;  1U16 A;  4EEI A;  3R6Q A;  4NSL A;  4APA A;  1TJ7 A;  2OHY A;  2O6Y A;  2YII A;  1YFE A;  1T6J A;  1I0A A;  1EB4 A;  4MX2 A;  3NZ4 A;  3UNV A;  1TJW A;  2PTR A;  4HGV A;  3R6V A;  1C3U A;  2X75 A;  2HVG A;  2RJS A;  1TJV A;  3RRP A;  2J91 A;  1FUP A;  3E04 A;  1HY1 A;  4FFX A;  2O7E A;  4CQ5 A;  3BHG A;  5F91 A; 
#chains in the Genus database with same CATH topology
 1Y2M A;  2O7F A;  2JAR A;  1Z4P X;  3QBP A;  2VL7 A;  1K7W A;  2JAW A;  5F91 A;  1GKM A;  2PTS A;  1Q5N A;  1HY0 A;  1B8F A;  1AUW A;  2O7D A;  1FUQ A;  3F4S A;  5F92 A;  1XL8 A;  1RE5 A;  1YIS A;  4V2Q A;  4L57 A;  4EFC A;  3NO9 A;  1TJU A;  2RJR A;  2FEN A;  3CRV A;  4MUM A;  3U13 A;  3OCE A;  3GTD A;  1Z4I A;  2QGA B;  1U15 A;  3RD8 A;  1JSW A;  2JAU A;  3BWV A;  4NLE A;  2VSF A;  2NYN A;  4WNL A;  2NYF A;  1Q91 A;  1XL7 A;  1XMD A;  1FUO A;  3R6Y A;  2VD6 A;  3OCF A;  1DCN A;  2FUS A;  3KDY A;  5D6B A;  2RCN A;  3GZH A;  4L6A A;  1YFM A;  1XWO A;  1W27 A;  1C3C A;  5EYT A;  1K62 A;  2O78 A;  4BAB A;  1DOF A;  1VDK A;  4A15 A;  1GKJ A;  3CI0 K;  4ADL A;  5M0I A;  4C5U A;  3BHG A;  4C6G A;  4C5S A;  1GK2 A;  3CZO A;  1T6P A;  1FUR A;  1XMC A;  4L6C A;  4C5R A;  5H8W A;  4MWO A;  3U19 A;  4APB A;  4BAA A;  3C8T A;  5EYV A;  1KQ7 A;  2PFM A;  4FLC A;  4ADM A;  1GK3 A;  4NFL A;  1J3U A;  2E9F A;  4V2R A;  4YIH A;  2O7B A;  5HW2 A;  2QVE A;  2PTQ A;  3TV2 A;  1XLY A;  2D27 A;  3KDZ A;  1U16 A;  2JAO A;  4EEI A;  3R6Q A;  2YV5 A;  4NSL A;  4APA A;  1TJ7 A;  4IQJ M;  2OHY A;  2O6Y A;  3CRW 1;  2YII A;  5M0J A;  1Z4L A;  1YFE A;  1T9H A;  1Z4Q A;  1I0A A;  1T6J A;  1EB4 A;  4MX2 A;  3NZ4 A;  3UNV A;  1TJW A;  1Z4M A;  4YIK A;  2PTR A;  1Z4K A;  1Z4J A;  4HGV A;  1IW7 D;  4E88 A;  2FEL A;  3R6V A;  1C3U A;  2X75 A;  2HVG A;  2RJS A;  3F4T A;  1TJV A;  3RRP A;  2J91 A;  1Q92 A;  1FUP A;  1U0L A;  3E04 A;  2I7D A;  3F4R A;  1HY1 A;  4FFX A;  2O7E A;  4CQ5 A;  1MH9 A;  2D28 C; 
#chains in the Genus database with same CATH homology
 1Y2M A;  2O7F A;  3QBP A;  1K7W A;  1GKM A;  2PTS A;  1Q5N A;  1HY0 A;  1B8F A;  1AUW A;  2O7D A;  1FUQ A;  5F92 A;  1RE5 A;  1YIS A;  4V2Q A;  4EFC A;  3NO9 A;  1TJU A;  2RJR A;  3OCE A;  3GTD A;  2QGA B;  1U15 A;  3RD8 A;  1JSW A;  4NLE A;  2NYN A;  2NYF A;  1FUO A;  3R6Y A;  2VD6 A;  3OCF A;  1DCN A;  2FUS A;  3KDY A;  5D6B A;  3GZH A;  1YFM A;  1XWO A;  1W27 A;  1C3C A;  5EYT A;  1K62 A;  2O78 A;  4BAB A;  1DOF A;  1VDK A;  1GKJ A;  4ADL A;  4C5U A;  4C6G A;  4C5S A;  1GK2 A;  3CZO A;  1T6P A;  1FUR A;  4C5R A;  4BAA A;  4APB A;  3C8T A;  5EYV A;  1KQ7 A;  2PFM A;  4FLC A;  4ADM A;  1GK3 A;  1J3U A;  2E9F A;  4V2R A;  2O7B A;  5HW2 A;  2QVE A;  2PTQ A;  3TV2 A;  3KDZ A;  1U16 A;  4EEI A;  3R6Q A;  4NSL A;  4APA A;  1TJ7 A;  2OHY A;  2O6Y A;  2YII A;  1YFE A;  1T6J A;  1I0A A;  1EB4 A;  4MX2 A;  3NZ4 A;  3UNV A;  1TJW A;  2PTR A;  4HGV A;  3R6V A;  1C3U A;  2X75 A;  2HVG A;  2RJS A;  1TJV A;  3RRP A;  2J91 A;  1FUP A;  3E04 A;  1HY1 A;  4FFX A;  2O7E A;  4CQ5 A;  3BHG A;  5F91 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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