3TV2A

Structure of a class ii fumarate hydratase from burkholderia pseudomallei
Total Genus 178
50100150200250300350400450050100150
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
457
structure length
457
Chain Sequence
RMERDTFGEIAVPAARLWGAQTQRSLQNFKISTEKQSPELIHALALIKRAAAAVNLELGVLAQDKANAIVAAADEIIAGRHADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGERGESRAVHPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAVGTGLNAHPKFAAGVAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVFRPMIAHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDALLNESLMLVTALNPHIGYDKAAQIAKKAHKEGTTLKAAALALGYVTDAQFDEWVRPEHMVG
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH6 (337-363)EMPTYTI4 (225-228)TI1 (149-152)S2 (152-155)AH1 (164-169)TI2 (157-160)TIV1 (170-173)TI3 (169-172)TIV2 (171-174)AH2 (182-202)AH3 (207-222)TIV3 (223-226)TIV4 (226-229)TIV6 (232-235)TIV5 (227-230)PH1 (270-274)TII2 (366-369)TII1 (275-278)AH5 (280-318)S4 (330-336)TI7 (318-321)TI8 (370-373)TII3 (375-378)S6 (399-400)O1 (396-398)TVIII1 (401-404)AH8 (404-409)TI9 (441-444)TIV8 (442-445)S7 (449-450)TII'1 (369-372)S1 (146-149)AH7 (381-394)TI5 (236-239)AH4 (240-258)S3 (322-327)TIV7 (326-329)S5 (364-365)AH9 (412-439)TI6 (263-266)Updating...
connected with : NaN
molecule tags Lyase
source organism Burkholderia pseudomallei
publication title Structure of a class II fumarate hydratase from Burkholderia pseudomallei
rcsb
molecule keywords Fumarate hydratase, class II
total genus 178
structure length 457
sequence length 457
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2011-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3tv2A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3tv2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3tv2A02
1K62A 3NO9A 4FLCA 2O7EA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 2OHYA 1GKJA 1EB4A 3BHGA 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5HW2A 1Q5NA 5EYTA 2O78A 1TJVA 4MX2A 4FFXA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 1YFMA 2FUSA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 4EFCA 1T6PA 1YFEA 2PTQA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH superfamily
1K62A 3NO9A 4FLCA 1Z4KA 2O7EA 5M0JA 3F4SA 5F92A 3R6YA 2RJRA 1KQ7A 4YIHA 4V2RA 1XL8A 2OHYA 1GKJA 1EB4A 3BHGA 4MWOA 1XL7A 3F4TA 1W27A 2JAWA 2NYNA 3OCEA 1Y2MA 1T9HA 3U19A 1HY0A 3R6VA 1GK2A 1DOFA 3KDYA 3NZ4A 2J91A 3CI0K 3KDZA 5F91A 4CQ5A 1MH9A 3UNVA 4C5SA 5H8WA 1U0LA 1XWOA 4IQJM 2O6YA 2D27A 3C8TA 4APBA 3RRPA 4HGVA 1Q91A 2VD6A 1FUQA 1T6JA 1IW7D 1U15A 4L57A 4L6CA 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2RCNA 2QVEA 3TV2A 2HVGA 1YISA 4C6GA 4NSLA 5HW2A 1Q5NA 5EYTA 1XLYA 2O78A 1TJVA 4A15A 4E88A 4MX2A 4FFXA 4L6AA 2JARA 4WNLA 2VSFA 1Z4MA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 2FELA 1YFMA 2D28C 2FUSA 2VL7A 1XMCA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 1Z4QA 3BWVA 2RJSA 1Z4PX 1VDKA 4EEIA 4C5UA 3E04A 2NYFA 3F4RA 3R6QA 1DCNA 1FURA 1Z4IA 4EFCA 1T6PA 1YFEA 2PTQA 5M0IA 1TJUA 4NFLA 2YIIA 2JAOA 2PTRA 2YV5A 1Q92A 1I0AA 1C3CA 1Z4JA 1TJ7A 1B8FA 2FENA 3OCFA 3RD8A 5D6BA 1Z4LA 2I7DA 3U13A 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4YIKA 4BABA 4MUMA 3CRVA 1XMDA 2JAUA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 3CRW1 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH topology
1K62A 3NO9A 4FLCA 2O7EA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 2OHYA 1GKJA 1EB4A 3BHGA 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5HW2A 1Q5NA 5EYTA 2O78A 1TJVA 4MX2A 4FFXA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 1YFMA 2FUSA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 4EFCA 1T6PA 1YFEA 2PTQA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5HW2 A;  1Q5N A;  5EYT A;  2O78 A;  1TJV A;  4MX2 A;  4FFX A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  1YFM A;  2FUS A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  4EFC A;  1T6P A;  1YFE A;  2PTQ A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  2E9F A;  1GKM A;  4BAA A; 
#chains in the Genus database with same CATH topology
 1K62 A;  3NO9 A;  4FLC A;  1Z4K A;  2O7E A;  5M0J A;  3F4S A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4YIH A;  4V2R A;  1XL8 A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  4MWO A;  1XL7 A;  3F4T A;  1W27 A;  2JAW A;  2NYN A;  3OCE A;  1Y2M A;  1T9H A;  3U19 A;  1HY0 A;  3R6V A;  1GK2 A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3CI0 K;  3KDZ A;  5F91 A;  4CQ5 A;  1MH9 A;  3UNV A;  4C5S A;  5H8W A;  1U0L A;  1XWO A;  4IQJ M;  2O6Y A;  2D27 A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  1Q91 A;  2VD6 A;  1FUQ A;  1T6J A;  1IW7 D;  1U15 A;  4L57 A;  4L6C A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2RCN A;  2QVE A;  3TV2 A;  2HVG A;  1YIS A;  4C6G A;  4NSL A;  5HW2 A;  1Q5N A;  5EYT A;  1XLY A;  2O78 A;  1TJV A;  4A15 A;  4E88 A;  4MX2 A;  4FFX A;  4L6A A;  2JAR A;  4WNL A;  2VSF A;  1Z4M A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  2FEL A;  1YFM A;  2D28 C;  2FUS A;  2VL7 A;  1XMC A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  1Z4Q A;  3BWV A;  2RJS A;  1Z4P X;  1VDK A;  4EEI A;  4C5U A;  3E04 A;  2NYF A;  3F4R A;  3R6Q A;  1DCN A;  1FUR A;  1Z4I A;  4EFC A;  1T6P A;  1YFE A;  2PTQ A;  5M0I A;  1TJU A;  4NFL A;  2YII A;  2JAO A;  2PTR A;  2YV5 A;  1Q92 A;  1I0A A;  1C3C A;  1Z4J A;  1TJ7 A;  1B8F A;  2FEN A;  3OCF A;  3RD8 A;  5D6B A;  1Z4L A;  2I7D A;  3U13 A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4YIK A;  4BAB A;  4MUM A;  3CRV A;  1XMD A;  2JAU A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  3CRW 1;  2E9F A;  1GKM A;  4BAA A; 
#chains in the Genus database with same CATH homology
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5HW2 A;  1Q5N A;  5EYT A;  2O78 A;  1TJV A;  4MX2 A;  4FFX A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  1YFM A;  2FUS A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  4EFC A;  1T6P A;  1YFE A;  2PTQ A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  2E9F A;  1GKM A;  4BAA A; 
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