The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
175
|
structure length |
175
|
Chain Sequence |
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit.
pubmed doi rcsb |
| molecule tags |
Ribosome/antibiotic
|
| molecule keywords |
RIBOSOMAL 23S RNA
|
| total genus |
14
|
| structure length |
175
|
| sequence length |
175
|
| ec nomenclature | |
| pdb deposition date | 2010-11-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| S | PF01386 | Ribosomal_L25p | Ribosomal L25p family |
| S | PF14693 | Ribosomal_TL5_C | Ribosomal protein TL5, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Ribosomal Protein L25; Chain P | Ribosomal Protein L25; Chain P | ||
| Mainly Beta | Beta Complex | RNA Polymerase Alpha Subunit; Chain A, domain 2 | Ribosomal protein L25, beta domain |
#chains in the Genus database with same CATH superfamily 4IO9 S; 4JXZ A; 5DM6 S; 2ZJQ S; 5JVG S; 1EXD A; 1FEU A; 4WCE S; 4IOC S; 1B75 A; 2ZJP S; 5GAH W; 2HZ7 A; 1EUQ A; 5JVH S; 3PIP S; 3CF5 S; 1QRS A; 5GAG W; 4WFB S; 4IOA S; 4WF9 S; 1GTS A; 1QRU A; 5IZN A; 1NYL A; 1QTQ A; 5GAD W; 3J7Z V; 3PIO S; 4JXX A; 1D6K A; 1EUY A; 4P2B A; 3AII A; 1QRT A; 4UY8 8; 4WFA S; 5BNZ A; 1GTR A; 4JYZ A; 1DFU P; 5HL7 S; 5DM7 S; 3DLL S; 1ZJW A; 5GAE W; 2RD2 A; 1O0B A; 4U67 S; 2RE8 A; 4H3S A; 2ZJR S; 1O0C A; 4WFN S; #chains in the Genus database with same CATH topology 3GTL C; 4AYB D; 5DM6 S; 2JA7 C; 3GTQ C; 2A6H A; 3M4O C; 4WCE S; 2R7Z C; 4KN7 A; 1Y1V C; 2R92 C; 2NVX C; 5C44 C; 1B75 A; 1EUQ A; 2PPB A; 2HZ7 A; 3S1M C; 4OIQ A; 2G6G A; 3PIP S; 1QRS A; 3HOV C; 4YFK A; 4MEY A; 3RZO C; 3WOD A; 1I6V A; 4LLG A; 4A3B C; 4G7O A; 2NVQ C; 5IZN A; 2CX8 A; 3HOW C; 3I4N C; 2Y0S D; 4BY7 C; 3PO3 C; 1GTR A; 3K7A C; 5IYC C; 4JYZ A; 4BY1 C; 3DLL S; 2E2I C; 2KXY A; 5GAE W; 4A3G C; 4OIN A; 3RZD C; 2JA6 C; 3GTK C; 5IYD C; 1O0C A; 4J3C A; 5FLM C; 2Z0Y A; 4IO9 S; 5IYB C; 5C3E C; 1TWA C; 4KN4 A; 2NVT C; 1WCM C; 1TWC C; 1FEU A; 3I4M C; 4X6A C; 4JK1 A; 4MEX A; 4A3C C; 5JVH S; 2O5J A; 5GAG W; 2NVY C; 1GTS A; 1Y1W C; 4A3J C; 5C4J C; 3S1R C; 2PJJ A; 2G5D A; 1QRU A; 4LJZ A; 2PIC A; 2PA8 D; 3HOU C; 3KW2 A; 3PIO S; 4JXX A; 3X1L B; 3HOY C; 3DXJ A; 4V19 4; 4L69 A; 3S17 C; 1UDX A; 2PMZ D; 4BBS C; 1ZJW A; 5DM7 S; 4OIO A; 4Y52 C; 1O0B A; 5C4X C; 4GZY A; 1HQM A; 1TWF C; 1I50 C; 3HKZ D; 2RE8 A; 4H3S A; 2KQ1 A; 4QJV A; 1V6Z A; 4MQ9 A; 5HQH A; 4OIP A; 2R93 C; 2GAE A; 1TWG C; 4A3D C; 1I3Q C; 2WB1 D; 1ZYR A; 3EQL A; 5IP9 C; 2JA8 C; 4ZH4 A; 3S2H C; 3W2W B; 4Y7N C; 3M3Y C; 1VHK A; 4IOC S; 1IW7 A; 3S15 C; 4A3K C; 4YFN A; 4A3I C; 2ZJP S; 5TMC A; 5TMF A; 4Q5S A; 2NWA A; 4A3F C; 1YNN A; 4XLN A; 4A93 C; 4NOI A; 4WF9 S; 4G7Z A; 2A69 A; 4YFX A; 4G7H A; 4XLP A; 3PO2 C; 4LK1 A; 3S14 C; 1I6H C; 1SFO C; 2BE5 A; 4LK0 A; 4BBR C; 1D6K A; 1EUY A; 3LYW A; 4C3H C; 5IP7 C; 3GTO C; 1VHY A; 4UY8 8; 4P2B A; 1QRT A; 2WAQ D; 5BNZ A; 4WFA S; 2L5N A; 4Q4Z A; 2L3U A; 3HOZ C; 3S1Q C; 2PNW A; 4C2M C; 1Z85 A; 3H3V D; 4C3I C; 3S1N C; 1TWH C; 1QTQ A; 3CZB A; 1K83 C; 5D4D A; 3S2D C; 3GTG C; 4XSZ A; 2E2J C; 4JXZ A; 3W2V B; 2ZJQ S; 5JVG S; 1SMY A; 1BDF A; 1EXD A; 3GTP C; 3H0G C; 1R9T C; 4H4K A; 2EGW A; 4A3E C; 4A3M C; 5GAH W; 2A6E A; 3CF5 S; 2A68 A; 1NXZ A; 3GTJ C; 4WFB S; 2JA5 C; 3HOX C; 4IOA S; 4OIR A; 2B63 C; 4A3L C; 2EGV A; 2YU9 C; 1YNJ A; 2AE0 X; 4C3J C; 1NYL A; 2O5I A; 5GAD W; 3J7Z V; 2VUM C; 4QIW D; 4XSX A; 4YG2 A; 3GTM C; 4KMU A; 3AII A; 2PI8 A; 3FKI C; 2E2H C; 4BXX C; 4E8B A; 1DFU P; 5HL7 S; 3CQZ C; 2RD2 A; 2CW0 A; 4U67 S; 2KPU A; 3S16 C; 2ZJR S; 4WFN S; #chains in the Genus database with same CATH homology 4IO9 S; 4JXZ A; 3W2V B; 5DM6 S; 2ZJQ S; 5JVG S; 1EXD A; 3W2W B; 1FEU A; 4WCE S; 4IOC S; 4H4K A; 1B75 A; 2ZJP S; 5GAH W; 2HZ7 A; 1EUQ A; 5JVH S; 3PIP S; 3CF5 S; 1QRS A; 5GAG W; 4WFB S; 4IOA S; 4WF9 S; 1GTS A; 1QRU A; 5IZN A; 1NYL A; 1QTQ A; 5GAD W; 3J7Z V; 3X1L B; 3PIO S; 4JXX A; 1D6K A; 1EUY A; 4V19 4; 4P2B A; 3AII A; 1QRT A; 4UY8 8; 5BNZ A; 4WFA S; 1UDX A; 4JYZ A; 1GTR A; 1DFU P; 5HL7 S; 5DM7 S; 3DLL S; 1ZJW A; 5GAE W; 2RD2 A; 1O0B A; 4U67 S; 2RE8 A; 4H3S A; 2ZJR S; 1O0C A; 4WFN S;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
