The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
177
|
sequence length |
460
|
structure length |
460
|
Chain Sequence |
NYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAEQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Conformational Changes Upon Ligand Binding in the Essential Class II Fumarase Rv1098C from Mycobacterium Tuberculosis.
pubmed doi rcsb |
| molecule keywords |
FUMARATE HYDRATASE CLASS II
|
| molecule tags |
Hydrolase
|
| source organism |
Mycobacterium tuberculosis
|
| total genus |
177
|
| structure length |
460
|
| sequence length |
460
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
4.2.1.2: Fumarate hydratase. |
| pdb deposition date | 2012-03-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00206 | Lyase_1 | Lyase |
| A | PF10415 | FumaraseC_C | Fumarase C C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase Protein R1; domain 1 | Fumarase/aspartase (C-terminal domain) | ||
| Mainly Alpha | Orthogonal Bundle | Fumarase C; Chain B, domain 1 | Fumarase/aspartase (N-terminal domain) | ||
| Mainly Alpha | Up-down Bundle | Fumarase C; Chain A, domain 2 | Fumarase/aspartase (Central domain) |
#chains in the Genus database with same CATH superfamily 4FFX A; 1C3U A; 3E04 A; 4NSL A; 3BHG A; 2OHY A; 3CZO A; 3OCE A; 5EYT A; 4V2R A; 1FUP A; 1U16 A; 1YIS A; 4APB A; 3RD8 A; 1XWO A; 2RJR A; 1T6J A; 2O78 A; 1C3C A; 2FUS A; 3TV2 A; 4ADL A; 4EFC A; 3NO9 A; 1YFE A; 2PTQ A; 1TJW A; 2O7F A; 1KQ7 A; 4C6G A; 2VD6 A; 1TJU A; 1Q5N A; 4CQ5 A; 1DCN A; 4C5S A; 4HGV A; 3QBP A; 4C5U A; 1K62 A; 1B8F A; 1GKM A; 2YII A; 1VDK A; 1TJV A; 1K7W A; 3C8T A; 4BAA A; 1AUW A; 4ADM A; 1YFM A; 3R6Y A; 4APA A; 1GK2 A; 2O7B A; 1JSW A; 1TJ7 A; 2E9F A; 5D6B A; 4MX2 A; 4FLC A; 3NZ4 A; 1GK3 A; 1HY0 A; 1FUO A; 1W27 A; 4EEI A; 1J3U A; 4V2Q A; 2O7E A; 2QVE A; 1RE5 A; 1DOF A; 3RRP A; 5F92 A; 1T6P A; 2O7D A; 1U15 A; 1FUR A; 1Y2M A; 1FUQ A; 4BAB A; 2NYF A; 1I0A A; 3UNV A; 4NLE A; 1HY1 A; 2RJS A; 3KDY A; 5EYV A; 3R6V A; 3GTD A; 2PTR A; 3KDZ A; 4C5R A; 2PTS A; 2NYN A; 2PFM A; 3R6Q A; 5F91 A; 2HVG A; 2J91 A; 2QGA B; 2O6Y A; 1GKJ A; 2X75 A; 5HW2 A; 3OCF A; 3GZH A; 1EB4 A; #chains in the Genus database with same CATH topology 1XMC A; 3U19 A; 4FFX A; 1C3U A; 3E04 A; 2D28 C; 4YIK A; 4L6A A; 4NSL A; 4YIH A; 3BHG A; 2OHY A; 3CZO A; 3OCE A; 1XL8 A; 2YV5 A; 5EYT A; 4V2R A; 1FUP A; 1U16 A; 1YIS A; 4APB A; 3CRV A; 3RD8 A; 1XWO A; 2RJR A; 1T6J A; 2O78 A; 1MH9 A; 2JAW A; 1Z4Q A; 2VL7 A; 1C3C A; 2FUS A; 3TV2 A; 4ADL A; 4EFC A; 3NO9 A; 2D27 A; 1YFE A; 2PTQ A; 1TJW A; 2O7F A; 1KQ7 A; 1Z4I A; 3F4R A; 4C6G A; 2VD6 A; 5M0J A; 1TJU A; 1Q5N A; 4CQ5 A; 1DCN A; 4C5S A; 2JAU A; 3F4T A; 4HGV A; 3QBP A; 3BWV A; 4C5U A; 1K62 A; 1Q92 A; 1B8F A; 1GKM A; 2YII A; 1VDK A; 5H8W A; 1TJV A; 3F4S A; 1Z4K A; 1K7W A; 3C8T A; 4BAA A; 2VSF A; 1AUW A; 1Q91 A; 4ADM A; 1Z4J A; 1YFM A; 3R6Y A; 4APA A; 1GK2 A; 2O7B A; 1JSW A; 1TJ7 A; 2E9F A; 5D6B A; 4MX2 A; 4E88 A; 1Z4P X; 5M0I A; 3CI0 K; 4FLC A; 4NFL A; 3NZ4 A; 1GK3 A; 1IW7 D; 2I7D A; 1HY0 A; 1FUO A; 1W27 A; 4EEI A; 1J3U A; 4WNL A; 4IQJ M; 4V2Q A; 2O7E A; 2FEN A; 2QVE A; 1RE5 A; 1DOF A; 3RRP A; 5F92 A; 1XL7 A; 1T6P A; 2O7D A; 1Z4L A; 1U0L A; 1U15 A; 1FUR A; 1Y2M A; 2JAR A; 1FUQ A; 4BAB A; 4L6C A; 2NYF A; 1I0A A; 3UNV A; 4MUM A; 3CRW 1; 4NLE A; 1HY1 A; 2RJS A; 3KDY A; 5EYV A; 3R6V A; 3GTD A; 2PTR A; 1XMD A; 3U13 A; 3KDZ A; 2PTS A; 2NYN A; 4C5R A; 2PFM A; 3R6Q A; 1Z4M A; 1XLY A; 5F91 A; 2HVG A; 2RCN A; 2J91 A; 2QGA B; 4A15 A; 2O6Y A; 1GKJ A; 2JAO A; 2X75 A; 5HW2 A; 2FEL A; 4MWO A; 1T9H A; 3OCF A; 3GZH A; 4L57 A; 1EB4 A; #chains in the Genus database with same CATH homology 4FFX A; 1C3U A; 3E04 A; 4NSL A; 3BHG A; 2OHY A; 3CZO A; 3OCE A; 5EYT A; 4V2R A; 1FUP A; 1U16 A; 1YIS A; 4APB A; 3RD8 A; 1XWO A; 2RJR A; 1T6J A; 2O78 A; 1C3C A; 2FUS A; 3TV2 A; 4ADL A; 4EFC A; 3NO9 A; 1YFE A; 2PTQ A; 1TJW A; 2O7F A; 1KQ7 A; 4C6G A; 2VD6 A; 1TJU A; 1Q5N A; 4CQ5 A; 1DCN A; 4C5S A; 4HGV A; 3QBP A; 4C5U A; 1K62 A; 1B8F A; 1GKM A; 2YII A; 1VDK A; 1TJV A; 1K7W A; 3C8T A; 4BAA A; 1AUW A; 4ADM A; 1YFM A; 3R6Y A; 4APA A; 1GK2 A; 2O7B A; 1JSW A; 1TJ7 A; 2E9F A; 5D6B A; 4MX2 A; 4FLC A; 3NZ4 A; 1GK3 A; 1HY0 A; 1FUO A; 1W27 A; 4EEI A; 1J3U A; 4V2Q A; 2O7E A; 2QVE A; 1RE5 A; 1DOF A; 3RRP A; 5F92 A; 1T6P A; 2O7D A; 1U15 A; 1FUR A; 1Y2M A; 1FUQ A; 4BAB A; 2NYF A; 1I0A A; 3UNV A; 4NLE A; 1HY1 A; 2RJS A; 3KDY A; 5EYV A; 3R6V A; 3GTD A; 2PTR A; 3KDZ A; 4C5R A; 2PTS A; 2NYN A; 2PFM A; 3R6Q A; 5F91 A; 2HVG A; 2J91 A; 2QGA B; 2O6Y A; 1GKJ A; 2X75 A; 5HW2 A; 3OCF A; 3GZH A; 1EB4 A;
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