4U67S

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
total genus 21
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2014-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4u67S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4u67S02
1QRTA 4WFBS 1GTSA 5GAHW 4IOAS 2HZ7A 1NYLA 4H3SA 2RE8A 1QRSA 1QTQA 4WF9S 1QRUA 4IOCS 5GAEW 1EUYA 2RD2A 4WFNS 5JVGS 3AIIA 5GADW 1EXDA 1EUQA 1ZJWA 4IO9S 1FEUA 1B75A 1D6KA 2ZJPS 1O0BA 5IZNA 3DLLS 5BNZA 5DM7S 2ZJRS 4JXZA 5JVHS 4WCES 3J7ZV 4JXXA 4U67S 2ZJQS 5GAGW 4JYZA 4P2BA 5DM6S 3PIPS 4WFAS 5HL7S 1O0CA 4UY88 1DFUP 3PIOS 3CF5S 1GTRA
chains in the Genus database with same CATH superfamily
2KQ1A 1TWGC 3W2WB 4XSXA 4KN4A 2HZ7A 4XLNA 1VHKA 1QTQA 2B63C 4OIPA 3S2DC 4IOCS 2CX8A 2JA5C 3PO2C 1I6HC 4QIWD 1EUYA 3HKZD 2RD2A 3H3VD 4LK1A 3AIIA 5IP7C 1EXDA 1EUQA 4A3KC 5TMFA 3HOWC 1ZJWA 4IO9S 4V194 4Y7NC 4BXXC 4A3JC 3S1NC 2ZJPS 3HOXC 3S1RC 2G6GA 1Z85A 2NVXC 2VUMC 3HOUC 4OIRA 1VHYA 4C2MC 4E8BA 5BNZA 2ZJRS 5D4DA 2EGVA 1WCMC 4JK1A 4Q4ZA 4KN7A 4JYZA 1I6VA 3RZDC 3GTPC 5C44C 2KPUA 2AE0X 1DFUP 3GTJC 3PIOS 3HOZC 3H0GC 2R93C 4YFKA 2EGWA 1I3QC 3PO3C 3S17C 2WAQD 3GTOC 1V6ZA 5C3EC 3HOVC 5GAHW 4XSZA 3GTLC 4H3SA 2NVYC 4WF9S 1QRUA 3S14C 5GAEW 4A3LC 3GTMC 3DXJA 1UDXA 2L3UA 4Q5SA 3HOYC 3W2VB 1B75A 4G7HA 3M4OC 1BDFA 1Y1WC 2PICA 2A69A 1O0BA 3X1LB 5IZNA 2E2HC 4JXZA 4BBRC 4LJZA 2JA6C 3J7ZV 4BY1C 3RZOC 4G7OA 2PI8A 4AYBD 5DM6S 3PIPS 1HQMA 4WFAS 1TWFC 5IP9C 3S2HC 5C4XC 5IYBC 4A3CC 5HQHA 3LYWA 4WFBS 2NWAA 4L69A 2KXYA 1NYLA 1YNNA 4C3JC 3CQZC 4A3GC 1QRSA 3M3YC 3FKIC 4G7ZA 3WODA 3CZBA 2G5DA 2A6EA 3S1QC 5JVGS 4OIQA 2PNWA 1TWHC 2JA7C 3S15C 4A3EC 2R7ZC 4A93C 1D6KA 2O5JA 5IYDC 2E2JC 3GTQC 2L5NA 4MEYA 3S16C 2PA8D 2JA8C 3DLLS 4A3IC 2A68A 5DM7S 1TWCC 1TWAC 3EQLA 1SMYA 5FLMC 4Y52C 5JVHS 4X6AC 4BBSC 1I50C 4JXXA 5IYCC 5GAGW 4OIOA 3GTGC 1O0CA 2R92C 5HL7S 4OINA 4YFNA 1SFOC 4A3FC 1QRTA 4A3BC 3I4NC 3S1MC 4A3MC 2PPBA 1YNJA 2O5IA 4H4KA 1GTSA 1ZYRA 4IOAS 2YU9C 2GAEA 2A6HA 2RE8A 4LK0A 4NOIA 4MQ9A 4XLPA 4KMUA 5TMCA 2Y0SD 5C4JC 4ZH4A 2BE5A 4LLGA 4C3IC 4GZYA 1NXZA 4WFNS 4J3CA 2NVQC 5GADW 2NVTC 1R9TC 1Y1VC 4YG2A 3GTKC 1FEUA 2PMZD 4QJVA 3KW2A 1IW7A 2WB1D 2Z0YA 4C3HC 4YFXA 4BY7C 2PJJA 4WCES 1K83C 4U67S 2ZJQS 3K7AC 2E2IC 2CW0A 4P2BA 4UY88 4A3DC 3I4MC 4MEXA 3CF5S 1GTRA
chains in the Genus database with same CATH topology
1QRTA 3W2WB 4WFBS 4H4KA 1GTSA 5GAHW 4IOAS 2HZ7A 1NYLA 4H3SA 2RE8A 1QRSA 1QTQA 4WF9S 1QRUA 4IOCS 5GAEW 1EUYA 2RD2A 4WFNS 1UDXA 3AIIA 5JVGS 5GADW 1EXDA 1EUQA 1ZJWA 4IO9S 3W2VB 4V194 1FEUA 1D6KA 1B75A 2ZJPS 1O0BA 3X1LB 5IZNA 3DLLS 5BNZA 5DM7S 2ZJRS 4JXZA 5JVHS 4WCES 3J7ZV 4JXXA 4U67S 2ZJQS 5GAGW 4JYZA 4P2BA 5DM6S 3PIPS 4WFAS 5HL7S 1O0CA 4UY88 1DFUP 3PIOS 3CF5S 1GTRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRT A;  4WFB S;  1GTS A;  5GAH W;  4IOA S;  2HZ7 A;  1NYL A;  4H3S A;  2RE8 A;  1QRS A;  1QTQ A;  4WF9 S;  1QRU A;  4IOC S;  5GAE W;  1EUY A;  2RD2 A;  4WFN S;  5JVG S;  3AII A;  5GAD W;  1EXD A;  1EUQ A;  1ZJW A;  4IO9 S;  1FEU A;  1B75 A;  1D6K A;  2ZJP S;  1O0B A;  5IZN A;  3DLL S;  5BNZ A;  5DM7 S;  2ZJR S;  4JXZ A;  5JVH S;  4WCE S;  3J7Z V;  4JXX A;  4U67 S;  2ZJQ S;  5GAG W;  4JYZ A;  4P2B A;  5DM6 S;  3PIP S;  4WFA S;  5HL7 S;  1O0C A;  4UY8 8;  1DFU P;  3PIO S;  3CF5 S;  1GTR A; 
#chains in the Genus database with same CATH topology
 2KQ1 A;  1TWG C;  3W2W B;  4XSX A;  4KN4 A;  2HZ7 A;  4XLN A;  1VHK A;  1QTQ A;  2B63 C;  4OIP A;  3S2D C;  4IOC S;  2CX8 A;  2JA5 C;  3PO2 C;  1I6H C;  4QIW D;  1EUY A;  3HKZ D;  2RD2 A;  3H3V D;  4LK1 A;  3AII A;  5IP7 C;  1EXD A;  1EUQ A;  4A3K C;  5TMF A;  3HOW C;  1ZJW A;  4IO9 S;  4V19 4;  4Y7N C;  4BXX C;  4A3J C;  3S1N C;  2ZJP S;  3HOX C;  3S1R C;  2G6G A;  1Z85 A;  2NVX C;  2VUM C;  3HOU C;  4OIR A;  1VHY A;  4C2M C;  4E8B A;  5BNZ A;  2ZJR S;  5D4D A;  2EGV A;  1WCM C;  4JK1 A;  4Q4Z A;  4KN7 A;  4JYZ A;  1I6V A;  3RZD C;  3GTP C;  5C44 C;  2KPU A;  2AE0 X;  1DFU P;  3GTJ C;  3PIO S;  3HOZ C;  3H0G C;  2R93 C;  4YFK A;  2EGW A;  1I3Q C;  3PO3 C;  3S17 C;  2WAQ D;  3GTO C;  1V6Z A;  5C3E C;  3HOV C;  5GAH W;  4XSZ A;  3GTL C;  4H3S A;  2NVY C;  4WF9 S;  1QRU A;  3S14 C;  5GAE W;  4A3L C;  3GTM C;  3DXJ A;  1UDX A;  2L3U A;  4Q5S A;  3HOY C;  3W2V B;  1B75 A;  4G7H A;  3M4O C;  1BDF A;  1Y1W C;  2PIC A;  2A69 A;  1O0B A;  3X1L B;  5IZN A;  2E2H C;  4JXZ A;  4BBR C;  4LJZ A;  2JA6 C;  3J7Z V;  4BY1 C;  3RZO C;  4G7O A;  2PI8 A;  4AYB D;  5DM6 S;  3PIP S;  1HQM A;  4WFA S;  1TWF C;  5IP9 C;  3S2H C;  5C4X C;  5IYB C;  4A3C C;  5HQH A;  3LYW A;  4WFB S;  2NWA A;  4L69 A;  2KXY A;  1NYL A;  1YNN A;  4C3J C;  3CQZ C;  4A3G C;  1QRS A;  3M3Y C;  3FKI C;  4G7Z A;  3WOD A;  3CZB A;  2G5D A;  2A6E A;  3S1Q C;  5JVG S;  4OIQ A;  2PNW A;  1TWH C;  2JA7 C;  3S15 C;  4A3E C;  2R7Z C;  4A93 C;  1D6K A;  2O5J A;  5IYD C;  2E2J C;  3GTQ C;  2L5N A;  4MEY A;  3S16 C;  2PA8 D;  2JA8 C;  3DLL S;  4A3I C;  2A68 A;  5DM7 S;  1TWC C;  1TWA C;  3EQL A;  1SMY A;  5FLM C;  4Y52 C;  5JVH S;  4X6A C;  4BBS C;  1I50 C;  4JXX A;  5IYC C;  5GAG W;  4OIO A;  3GTG C;  1O0C A;  2R92 C;  5HL7 S;  4OIN A;  4YFN A;  1SFO C;  4A3F C;  1QRT A;  4A3B C;  3I4N C;  3S1M C;  4A3M C;  2PPB A;  1YNJ A;  2O5I A;  4H4K A;  1GTS A;  1ZYR A;  4IOA S;  2YU9 C;  2GAE A;  2A6H A;  2RE8 A;  4LK0 A;  4NOI A;  4MQ9 A;  4XLP A;  4KMU A;  5TMC A;  2Y0S D;  5C4J C;  4ZH4 A;  2BE5 A;  4LLG A;  4C3I C;  4GZY A;  1NXZ A;  4WFN S;  4J3C A;  2NVQ C;  5GAD W;  2NVT C;  1R9T C;  1Y1V C;  4YG2 A;  3GTK C;  1FEU A;  2PMZ D;  4QJV A;  3KW2 A;  1IW7 A;  2WB1 D;  2Z0Y A;  4C3H C;  4YFX A;  4BY7 C;  2PJJ A;  4WCE S;  1K83 C;  4U67 S;  2ZJQ S;  3K7A C;  2E2I C;  2CW0 A;  4P2B A;  4UY8 8;  4A3D C;  3I4M C;  4MEX A;  3CF5 S;  1GTR A; 
#chains in the Genus database with same CATH homology
 1QRT A;  3W2W B;  4WFB S;  4H4K A;  1GTS A;  5GAH W;  4IOA S;  2HZ7 A;  1NYL A;  4H3S A;  2RE8 A;  1QRS A;  1QTQ A;  4WF9 S;  1QRU A;  4IOC S;  5GAE W;  1EUY A;  2RD2 A;  4WFN S;  1UDX A;  3AII A;  5JVG S;  5GAD W;  1EXD A;  1EUQ A;  1ZJW A;  4IO9 S;  3W2V B;  4V19 4;  1FEU A;  1D6K A;  1B75 A;  2ZJP S;  1O0B A;  3X1L B;  5IZN A;  3DLL S;  5BNZ A;  5DM7 S;  2ZJR S;  4JXZ A;  5JVH S;  4WCE S;  3J7Z V;  4JXX A;  4U67 S;  2ZJQ S;  5GAG W;  4JYZ A;  4P2B A;  5DM6 S;  3PIP S;  4WFA S;  5HL7 S;  1O0C A;  4UY8 8;  1DFU P;  3PIO S;  3CF5 S;  1GTR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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