4WF9S

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (61-64)S1 (4-9)3H2 (21-24)S2 (29-33)3H3 (46-48)TI'1 (48-51)3H4 (51-53)TI'2 (53-56)TI'3 (56-59)S5 (69-80)TIV4 (120-123)S7 (104-105)TIV7 (133-136)S8 (135-136)O2 (167-169)S3 (41-43)TIV2 (65-68)TIV5 (122-125)O1 (117-119)3H1 (16-19)S6 (85-93)TIV3 (80-83)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 24
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wf9S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wf9S02
4IO9S 4WFNS 4WCES 1QRSA 1NYLA 3CF5S 2ZJRS 5JVHS 1EUQA 5IZNA 4UY88 4U67S 1D6KA 1QTQA 1B75A 2ZJPS 5GAEW 2RE8A 5JVGS 3J7ZV 3PIPS 2HZ7A 1EUYA 4H3SA 4JYZA 4IOCS 1QRUA 4P2BA 5DM6S 3DLLS 1QRTA 4WFBS 1DFUP 2ZJQS 4WFAS 1GTSA 4IOAS 4JXXA 1ZJWA 2RD2A 5GADW 1O0BA 3AIIA 5GAGW 1EXDA 4WF9S 3PIOS 1O0CA 1GTRA 4JXZA 5HL7S 5GAHW 5BNZA 1FEUA 5DM7S
chains in the Genus database with same CATH superfamily
2R93C 4BY7C 1QRSA 2JA7C 3I4NC 3DXJA 2A6EA 4BXXC 5HQHA 5IYBC 2ZJRS 4LJZA 2KXYA 3S1NC 2WB1D 1D6KA 3GTPC 2KQ1A 4MEYA 2PJJA 4Q5SA 1I50C 1YNJA 4OINA 2A68A 3S17C 2HZ7A 2L3UA 3EQLA 4C3IC 4Y52C 1UDXA 4IOCS 1QRUA 4P2BA 3DLLS 1DFUP 3GTOC 4WFBS 4AYBD 2KPUA 4A3BC 2PA8D 4IOAS 3H3VD 2E2JC 1TWGC 3KW2A 2B63C 3CQZC 4YFNA 5IYCC 1HQMA 1O0BA 3GTKC 2PPBA 4A93C 4XLPA 3PIOS 5C4JC 1GTRA 4YFXA 4A3DC 5IP7C 3GTLC 4GZYA 4J3CA 2Z0YA 2PI8A 1TWCC 4YG2A 5GAHW 3S2HC 1FEUA 5DM7S 3S14C 4XSXA 1WCMC 4YFKA 5D4DA 4Y7NC 4A3KC 4WFNS 2PMZD 1BDFA 3FKIC 3HOZC 2NWAA 3W2VB 1I6VA 4UY88 4U67S 2GAEA 1QTQA 2PNWA 3K7AC 4KMUA 2ZJPS 5GAEW 2RE8A 4JK1A 3GTJC 4BY1C 5TMFA 2WAQD 5IYDC 1SMYA 1VHYA 4A3EC 3S1MC 4H3SA 4JYZA 1TWHC 4OIQA 4NOIA 1TWFC 4WFAS 2NVTC 2EGVA 2L5NA 4JXXA 1ZJWA 2EGWA 4QJVA 1Y1VC 2RD2A 4WF9S 4XLNA 3HOWC 4A3LC 4JXZA 2O5IA 4LLGA 4X6AC 2JA6C 3I4MC 4A3CC 5BNZA 2Y0SD 4XSZA 2NVYC 1ZYRA 2NVQC 4WCES 2YU9C 2G5DA 3LYWA 3HOYC 2JA8C 4L69A 5JVHS 4Q4ZA 1I3QC 3S15C 4A3GC 4G7ZA 1B75A 2BE5A 5IP9C 1R9TC 4KN4A 3W2WB 3J7ZV 2G6GA 4G7OA 2R92C 1K83C 3PO2C 1QRTA 4ZH4A 5DM6S 1I6HC 2ZJQS 4A3IC 4KN7A 4OIRA 1GTSA 4OIOA 3HOUC 3GTGC 4E8BA 1IW7A 5GADW 4A3FC 2VUMC 5HL7S 2CW0A 3GTQC 1NXZA 1V6ZA 3RZOC 2AE0X 4IO9S 3CZBA 3S1RC 4LK1A 1NYLA 3CF5S 3HOVC 4QIWD 1EUQA 1TWAC 4C3JC 3X1LB 5IZNA 4A3MC 4MEXA 1SFOC 2CX8A 3WODA 4OIPA 3RZDC 2O5JA 5JVGS 5C4XC 2A6HA 4G7HA 4BBSC 3S2DC 3PIPS 4V194 2A69A 2PICA 1EUYA 5FLMC 4MQ9A 5C44C 3M3YC 3GTMC 3PO3C 3HOXC 1YNNA 5TMCA 4C2MC 4LK0A 2E2HC 2NVXC 2R7ZC 3AIIA 5GAGW 1EXDA 3HKZD 5C3EC 3H0GC 1Z85A 1O0CA 4BBRC 4A3JC 3S16C 1Y1WC 3S1QC 4C3HC 2E2IC 4H4KA 3M4OC 1VHKA 2JA5C
chains in the Genus database with same CATH topology
4IO9S 4WFNS 4WCES 1QRSA 1NYLA 3CF5S 2ZJRS 3W2VB 5JVHS 1EUQA 3X1LB 5IZNA 4UY88 4U67S 1D6KA 1QTQA 1B75A 2ZJPS 5GAEW 2RE8A 5JVGS 3W2WB 3J7ZV 3PIPS 2HZ7A 4V194 1EUYA 4H3SA 1UDXA 4JYZA 4IOCS 1QRUA 4P2BA 5DM6S 3DLLS 1QRTA 4WFBS 1DFUP 2ZJQS 4WFAS 1GTSA 4IOAS 4JXXA 1ZJWA 2RD2A 5GADW 1O0BA 3AIIA 5GAGW 1EXDA 4WF9S 3PIOS 1O0CA 1GTRA 4JXZA 5HL7S 4H4KA 5GAHW 5BNZA 1FEUA 5DM7S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IO9 S;  4WFN S;  4WCE S;  1QRS A;  1NYL A;  3CF5 S;  2ZJR S;  5JVH S;  1EUQ A;  5IZN A;  4UY8 8;  4U67 S;  1D6K A;  1QTQ A;  1B75 A;  2ZJP S;  5GAE W;  2RE8 A;  5JVG S;  3J7Z V;  3PIP S;  2HZ7 A;  1EUY A;  4H3S A;  4JYZ A;  4IOC S;  1QRU A;  4P2B A;  5DM6 S;  3DLL S;  1QRT A;  4WFB S;  1DFU P;  2ZJQ S;  4WFA S;  1GTS A;  4IOA S;  4JXX A;  1ZJW A;  2RD2 A;  5GAD W;  1O0B A;  3AII A;  5GAG W;  1EXD A;  4WF9 S;  3PIO S;  1O0C A;  1GTR A;  4JXZ A;  5HL7 S;  5GAH W;  5BNZ A;  1FEU A;  5DM7 S; 
#chains in the Genus database with same CATH topology
 2R93 C;  4BY7 C;  1QRS A;  2JA7 C;  3I4N C;  3DXJ A;  2A6E A;  4BXX C;  5HQH A;  5IYB C;  2ZJR S;  4LJZ A;  2KXY A;  3S1N C;  2WB1 D;  1D6K A;  3GTP C;  2KQ1 A;  4MEY A;  2PJJ A;  4Q5S A;  1I50 C;  1YNJ A;  4OIN A;  2A68 A;  3S17 C;  2HZ7 A;  2L3U A;  3EQL A;  4C3I C;  4Y52 C;  1UDX A;  4IOC S;  1QRU A;  4P2B A;  3DLL S;  1DFU P;  3GTO C;  4WFB S;  4AYB D;  2KPU A;  4A3B C;  2PA8 D;  4IOA S;  3H3V D;  2E2J C;  1TWG C;  3KW2 A;  2B63 C;  3CQZ C;  4YFN A;  5IYC C;  1HQM A;  1O0B A;  3GTK C;  2PPB A;  4A93 C;  4XLP A;  3PIO S;  5C4J C;  1GTR A;  4YFX A;  4A3D C;  5IP7 C;  3GTL C;  4GZY A;  4J3C A;  2Z0Y A;  2PI8 A;  1TWC C;  4YG2 A;  5GAH W;  3S2H C;  1FEU A;  5DM7 S;  3S14 C;  4XSX A;  1WCM C;  4YFK A;  5D4D A;  4Y7N C;  4A3K C;  4WFN S;  2PMZ D;  1BDF A;  3FKI C;  3HOZ C;  2NWA A;  3W2V B;  1I6V A;  4UY8 8;  4U67 S;  2GAE A;  1QTQ A;  2PNW A;  3K7A C;  4KMU A;  2ZJP S;  5GAE W;  2RE8 A;  4JK1 A;  3GTJ C;  4BY1 C;  5TMF A;  2WAQ D;  5IYD C;  1SMY A;  1VHY A;  4A3E C;  3S1M C;  4H3S A;  4JYZ A;  1TWH C;  4OIQ A;  4NOI A;  1TWF C;  4WFA S;  2NVT C;  2EGV A;  2L5N A;  4JXX A;  1ZJW A;  2EGW A;  4QJV A;  1Y1V C;  2RD2 A;  4WF9 S;  4XLN A;  3HOW C;  4A3L C;  4JXZ A;  2O5I A;  4LLG A;  4X6A C;  2JA6 C;  3I4M C;  4A3C C;  5BNZ A;  2Y0S D;  4XSZ A;  2NVY C;  1ZYR A;  2NVQ C;  4WCE S;  2YU9 C;  2G5D A;  3LYW A;  3HOY C;  2JA8 C;  4L69 A;  5JVH S;  4Q4Z A;  1I3Q C;  3S15 C;  4A3G C;  4G7Z A;  1B75 A;  2BE5 A;  5IP9 C;  1R9T C;  4KN4 A;  3W2W B;  3J7Z V;  2G6G A;  4G7O A;  2R92 C;  1K83 C;  3PO2 C;  1QRT A;  4ZH4 A;  5DM6 S;  1I6H C;  2ZJQ S;  4A3I C;  4KN7 A;  4OIR A;  1GTS A;  4OIO A;  3HOU C;  3GTG C;  4E8B A;  1IW7 A;  5GAD W;  4A3F C;  2VUM C;  5HL7 S;  2CW0 A;  3GTQ C;  1NXZ A;  1V6Z A;  3RZO C;  2AE0 X;  4IO9 S;  3CZB A;  3S1R C;  4LK1 A;  1NYL A;  3CF5 S;  3HOV C;  4QIW D;  1EUQ A;  1TWA C;  4C3J C;  3X1L B;  5IZN A;  4A3M C;  4MEX A;  1SFO C;  2CX8 A;  3WOD A;  4OIP A;  3RZD C;  2O5J A;  5JVG S;  5C4X C;  2A6H A;  4G7H A;  4BBS C;  3S2D C;  3PIP S;  4V19 4;  2A69 A;  2PIC A;  1EUY A;  5FLM C;  4MQ9 A;  5C44 C;  3M3Y C;  3GTM C;  3PO3 C;  3HOX C;  1YNN A;  5TMC A;  4C2M C;  4LK0 A;  2E2H C;  2NVX C;  2R7Z C;  3AII A;  5GAG W;  1EXD A;  3HKZ D;  5C3E C;  3H0G C;  1Z85 A;  1O0C A;  4BBR C;  4A3J C;  3S16 C;  1Y1W C;  3S1Q C;  4C3H C;  2E2I C;  4H4K A;  3M4O C;  1VHK A;  2JA5 C; 
#chains in the Genus database with same CATH homology
 4IO9 S;  4WFN S;  4WCE S;  1QRS A;  1NYL A;  3CF5 S;  2ZJR S;  3W2V B;  5JVH S;  1EUQ A;  3X1L B;  5IZN A;  4UY8 8;  4U67 S;  1D6K A;  1QTQ A;  1B75 A;  2ZJP S;  5GAE W;  2RE8 A;  5JVG S;  3W2W B;  3J7Z V;  3PIP S;  2HZ7 A;  4V19 4;  1EUY A;  4H3S A;  1UDX A;  4JYZ A;  4IOC S;  1QRU A;  4P2B A;  5DM6 S;  3DLL S;  1QRT A;  4WFB S;  1DFU P;  2ZJQ S;  4WFA S;  1GTS A;  4IOA S;  4JXX A;  1ZJW A;  2RD2 A;  5GAD W;  1O0B A;  3AII A;  5GAG W;  1EXD A;  4WF9 S;  3PIO S;  1O0C A;  1GTR A;  4JXZ A;  5HL7 S;  4H4K A;  5GAH W;  5BNZ A;  1FEU A;  5DM7 S; 
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similar chains in the pdb database (?% sequence similarity)

 
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