1EG9A

Naphthalene 1,2-dioxygenase with indole bound in the active site.
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT)
publication title Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 158
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2000-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1eg9A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1eg9A01
4QUPA 2HMOA 3CX5E 5AEWA 4NBGA 1SQBE 1NYKA 1SQVE 2GBXA 2YVJB 3DQYA 3GTEA 3GB4A 4HKVA 2BCCE 2XSHA 2BMRA 2HMLA 2QJKC 2JZAA 2YIUC 3L75E 3D89A 3EN1A 4QDCA 2E76D 1NTZE 4NBBD 4QDFB 1UUWA 3H1LE 2XSOA 1Z01A 3CWBE 2DE7A 3GZXA 1Z02A 4HM3A 4U3FE 4HM6A 3CXHE 3VMGA 3H1KE 1SQQE 2YFIA 4NBHD 5KLVE 1O7PA 4NBFA 1L0LE 4NBCA 4NBED 1PPJE 2I7FA 4PV1D 4NBAD 1WW9A 2HMMA 3GKEA 4NB8A 4HM4A 1VM9A 2QPZA 3GZYA 1NDOA 3VMHA 3VCAA 1EG9A 1ULJA 2FYNC 1NTKE 2B1XA 2HMNA 5CXMA 3L72E 1RIEA 1WQLA 4HM8A 5BOKA 4AAYB 3VMIA 2Q3WA 4NBDD 2BMOA 4HJLA 1NTME 1O7WA 1O7HA 2A06E 2D2CD 4H13D 2NWFA 4HM1A 2BMQA 1VCKA 1Q90C 3FOUA 3GL2A 3GCFA 3H1JE 1KYOE 2DE6D 5KLIC 4AIVA 3TGUE 3L73E 1BE3E 1SQPE 4NBFD 4QDDA 1KB9E 1SQXE 2CKFA 3H1IE 1O7NA 1G8KB 4NB9D 1O7MA 3GL0A 4QDFA 4EMJB 1ULIA 2HMJA 4NBGD 4NBBA 4NB8D 4P1BH 2E74D 2NUKA 2FYUE 3N0QA 3VMHD 4HM0A 4HM5A 4H0LD 4NBHA 3GKQA 2NVGA 3L70E 3VMID 2NUMA 1UUVA 4H44D 2DE5A 3AZCA 4PD4E 2NVEA 2NVFA 4HM2A 3GTSA 1P84E 1G8JB 4NBEA 4NBAA 2DE7D 2QJPC 3VMGD 5HL4A 1Z03A 2XR8A 3VCPA 2ZYLA 4NBCD 2YFJA 1L0NE 2HMKA 1O7GA 2ZT9D 3L71E 5KKZC 4HM7A 4P1CH 1FQTA 3GCEA 4NBDA 2E4PA 4QURA 2QJYC 1BCCE 4OGQD 5AEUA 2E75D 2JO6A 1SJGA 1EZVE 3H1HE 2XRXA 2IBZE 3BCCE 1RFSA 4QUQA 3GOBA 4QCKA 1VF5D 2DE6A 1NU1E 1ZRTE 2DE5D 2B24A 2E4QA 1JM1A 3L74E 3C0DA 2YFLA 4NB9A 2GBWA 1PP9E 3EQQA
chains in the Genus database with same CATH superfamily
4QUPA 2HMOA 3CX5E 5AEWA 4NBGA 1SQBE 1NYKA 1SQVE 2GBXA 2YVJB 3DQYA 3GTEA 3GB4A 4HKVA 2BCCE 2XSHA 2BMRA 2HMLA 2QJKC 2JZAA 2YIUC 3L75E 3D89A 3EN1A 4QDCA 2E76D 1NTZE 4NBBD 4QDFB 1UUWA 3H1LE 2XSOA 1Z01A 3CWBE 2DE7A 3GZXA 1Z02A 4HM3A 4U3FE 4HM6A 3CXHE 3VMGA 3H1KE 1SQQE 2YFIA 4NBHD 5KLVE 1O7PA 4NBFA 1L0LE 4NBCA 4NBED 1PPJE 2I7FA 4PV1D 4NBAD 1WW9A 2HMMA 3GKEA 4NB8A 4HM4A 1VM9A 2QPZA 3GZYA 1NDOA 3VMHA 3VCAA 1EG9A 1ULJA 2FYNC 1NTKE 2B1XA 2HMNA 5CXMA 3L72E 1RIEA 1WQLA 4HM8A 5BOKA 4AAYB 3VMIA 2Q3WA 4NBDD 2BMOA 4HJLA 1NTME 1O7WA 1O7HA 2A06E 2D2CD 4H13D 2NWFA 4HM1A 2BMQA 1VCKA 1Q90C 3FOUA 3GL2A 3GCFA 3H1JE 1KYOE 2DE6D 5KLIC 4AIVA 3TGUE 3L73E 1BE3E 1SQPE 4NBFD 4QDDA 1KB9E 1SQXE 2CKFA 3H1IE 1O7NA 1G8KB 4NB9D 1O7MA 3GL0A 4QDFA 4EMJB 1ULIA 2HMJA 4NBGD 4NBBA 4NB8D 4P1BH 2E74D 2NUKA 2FYUE 3N0QA 3VMHD 4HM0A 4HM5A 4H0LD 4NBHA 3GKQA 2NVGA 3L70E 3VMID 2NUMA 1UUVA 4H44D 2DE5A 3AZCA 4PD4E 2NVEA 2NVFA 4HM2A 3GTSA 1P84E 1G8JB 4NBEA 4NBAA 2DE7D 2QJPC 3VMGD 5HL4A 1Z03A 2XR8A 3VCPA 2ZYLA 4NBCD 2YFJA 1L0NE 2HMKA 1O7GA 2ZT9D 3L71E 5KKZC 4HM7A 4P1CH 1FQTA 3GCEA 4NBDA 2E4PA 4QURA 2QJYC 1BCCE 4OGQD 5AEUA 2E75D 2JO6A 1SJGA 1EZVE 3H1HE 2XRXA 2IBZE 3BCCE 1RFSA 4QUQA 3GOBA 4QCKA 1VF5D 2DE6A 1NU1E 1ZRTE 2DE5D 2B24A 2E4QA 1JM1A 3L74E 3C0DA 2YFLA 4NB9A 2GBWA 1PP9E 3EQQA
chains in the Genus database with same CATH topology
4QUPA 2HMOA 3CX5E 5AEWA 4NBGA 1SQBE 1NYKA 1SQVE 2GBXA 2YVJB 3DQYA 3GTEA 3GB4A 4HKVA 2BCCE 2XSHA 2BMRA 2HMLA 2QJKC 2JZAA 2YIUC 3L75E 3D89A 3EN1A 4QDCA 2E76D 1NTZE 4NBBD 4QDFB 1UUWA 3H1LE 2XSOA 1Z01A 3CWBE 2DE7A 3GZXA 1Z02A 4HM3A 4U3FE 4HM6A 3CXHE 3VMGA 3H1KE 1SQQE 2YFIA 4NBHD 5KLVE 1O7PA 4NBFA 1L0LE 4NBCA 4NBED 1PPJE 2I7FA 4PV1D 4NBAD 1WW9A 2HMMA 3GKEA 4NB8A 4HM4A 1VM9A 2QPZA 3GZYA 1NDOA 3VMHA 3VCAA 1EG9A 1ULJA 2FYNC 1NTKE 2B1XA 2HMNA 5CXMA 3L72E 1RIEA 1WQLA 4HM8A 5BOKA 4AAYB 3VMIA 2Q3WA 4NBDD 2BMOA 4HJLA 1NTME 1O7WA 1O7HA 2A06E 2D2CD 4H13D 2NWFA 4HM1A 2BMQA 1VCKA 1Q90C 3FOUA 3GL2A 3GCFA 3H1JE 1KYOE 2DE6D 5KLIC 4AIVA 3TGUE 3L73E 1BE3E 1SQPE 4NBFD 4QDDA 1KB9E 1SQXE 2CKFA 3H1IE 1O7NA 1G8KB 4NB9D 1O7MA 3GL0A 4QDFA 4EMJB 1ULIA 2HMJA 4NBGD 4NBBA 4NB8D 4P1BH 2E74D 2NUKA 2FYUE 3N0QA 3VMHD 4HM0A 4HM5A 4H0LD 4NBHA 3GKQA 2NVGA 3L70E 3VMID 2NUMA 1UUVA 4H44D 2DE5A 3AZCA 4PD4E 2NVEA 2NVFA 4HM2A 3GTSA 1P84E 1G8JB 4NBEA 4NBAA 2DE7D 2QJPC 3VMGD 5HL4A 1Z03A 2XR8A 3VCPA 2ZYLA 4NBCD 2YFJA 1L0NE 2HMKA 1O7GA 2ZT9D 3L71E 5KKZC 4HM7A 4P1CH 1FQTA 3GCEA 4NBDA 2E4PA 4QURA 2QJYC 1BCCE 4OGQD 5AEUA 2E75D 2JO6A 1SJGA 1EZVE 3H1HE 2XRXA 2IBZE 3BCCE 1RFSA 4QUQA 3GOBA 4QCKA 1VF5D 2DE6A 1NU1E 1ZRTE 2DE5D 2B24A 2E4QA 1JM1A 3L74E 3C0DA 2YFLA 4NB9A 2GBWA 1PP9E 3EQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUP A;  2HMO A;  3CX5 E;  5AEW A;  4NBG A;  1SQB E;  1NYK A;  1SQV E;  2GBX A;  2YVJ B;  3DQY A;  3GTE A;  3GB4 A;  4HKV A;  2BCC E;  2XSH A;  2BMR A;  2HML A;  2QJK C;  2JZA A;  2YIU C;  3L75 E;  3D89 A;  3EN1 A;  4QDC A;  2E76 D;  1NTZ E;  4NBB D;  4QDF B;  1UUW A;  3H1L E;  2XSO A;  1Z01 A;  3CWB E;  2DE7 A;  3GZX A;  1Z02 A;  4HM3 A;  4U3F E;  4HM6 A;  3CXH E;  3VMG A;  3H1K E;  1SQQ E;  2YFI A;  4NBH D;  5KLV E;  1O7P A;  4NBF A;  1L0L E;  4NBC A;  4NBE D;  1PPJ E;  2I7F A;  4PV1 D;  4NBA D;  1WW9 A;  2HMM A;  3GKE A;  4NB8 A;  4HM4 A;  1VM9 A;  2QPZ A;  3GZY A;  1NDO A;  3VMH A;  3VCA A;  1EG9 A;  1ULJ A;  2FYN C;  1NTK E;  2B1X A;  2HMN A;  5CXM A;  3L72 E;  1RIE A;  1WQL A;  4HM8 A;  5BOK A;  4AAY B;  3VMI A;  2Q3W A;  4NBD D;  2BMO A;  4HJL A;  1NTM E;  1O7W A;  1O7H A;  2A06 E;  2D2C D;  4H13 D;  2NWF A;  4HM1 A;  2BMQ A;  1VCK A;  1Q90 C;  3FOU A;  3GL2 A;  3GCF A;  3H1J E;  1KYO E;  2DE6 D;  5KLI C;  4AIV A;  3TGU E;  3L73 E;  1BE3 E;  1SQP E;  4NBF D;  4QDD A;  1KB9 E;  1SQX E;  2CKF A;  3H1I E;  1O7N A;  1G8K B;  4NB9 D;  1O7M A;  3GL0 A;  4QDF A;  4EMJ B;  1ULI A;  2HMJ A;  4NBG D;  4NBB A;  4NB8 D;  4P1B H;  2E74 D;  2NUK A;  2FYU E;  3N0Q A;  3VMH D;  4HM0 A;  4HM5 A;  4H0L D;  4NBH A;  3GKQ A;  2NVG A;  3L70 E;  3VMI D;  2NUM A;  1UUV A;  4H44 D;  2DE5 A;  3AZC A;  4PD4 E;  2NVE A;  2NVF A;  4HM2 A;  3GTS A;  1P84 E;  1G8J B;  4NBE A;  4NBA A;  2DE7 D;  2QJP C;  3VMG D;  5HL4 A;  1Z03 A;  2XR8 A;  3VCP A;  2ZYL A;  4NBC D;  2YFJ A;  1L0N E;  2HMK A;  1O7G A;  2ZT9 D;  3L71 E;  5KKZ C;  4HM7 A;  4P1C H;  1FQT A;  3GCE A;  4NBD A;  2E4P A;  4QUR A;  2QJY C;  1BCC E;  4OGQ D;  5AEU A;  2E75 D;  2JO6 A;  1SJG A;  1EZV E;  3H1H E;  2XRX A;  2IBZ E;  3BCC E;  1RFS A;  4QUQ A;  3GOB A;  4QCK A;  1VF5 D;  2DE6 A;  1NU1 E;  1ZRT E;  2DE5 D;  2B24 A;  2E4Q A;  1JM1 A;  3L74 E;  3C0D A;  2YFL A;  4NB9 A;  2GBW A;  1PP9 E;  3EQQ A; 
#chains in the Genus database with same CATH topology
 4QUP A;  2HMO A;  3CX5 E;  5AEW A;  4NBG A;  1SQB E;  1NYK A;  1SQV E;  2GBX A;  2YVJ B;  3DQY A;  3GTE A;  3GB4 A;  4HKV A;  2BCC E;  2XSH A;  2BMR A;  2HML A;  2QJK C;  2JZA A;  2YIU C;  3L75 E;  3D89 A;  3EN1 A;  4QDC A;  2E76 D;  1NTZ E;  4NBB D;  4QDF B;  1UUW A;  3H1L E;  2XSO A;  1Z01 A;  3CWB E;  2DE7 A;  3GZX A;  1Z02 A;  4HM3 A;  4U3F E;  4HM6 A;  3CXH E;  3VMG A;  3H1K E;  1SQQ E;  2YFI A;  4NBH D;  5KLV E;  1O7P A;  4NBF A;  1L0L E;  4NBC A;  4NBE D;  1PPJ E;  2I7F A;  4PV1 D;  4NBA D;  1WW9 A;  2HMM A;  3GKE A;  4NB8 A;  4HM4 A;  1VM9 A;  2QPZ A;  3GZY A;  1NDO A;  3VMH A;  3VCA A;  1EG9 A;  1ULJ A;  2FYN C;  1NTK E;  2B1X A;  2HMN A;  5CXM A;  3L72 E;  1RIE A;  1WQL A;  4HM8 A;  5BOK A;  4AAY B;  3VMI A;  2Q3W A;  4NBD D;  2BMO A;  4HJL A;  1NTM E;  1O7W A;  1O7H A;  2A06 E;  2D2C D;  4H13 D;  2NWF A;  4HM1 A;  2BMQ A;  1VCK A;  1Q90 C;  3FOU A;  3GL2 A;  3GCF A;  3H1J E;  1KYO E;  2DE6 D;  5KLI C;  4AIV A;  3TGU E;  3L73 E;  1BE3 E;  1SQP E;  4NBF D;  4QDD A;  1KB9 E;  1SQX E;  2CKF A;  3H1I E;  1O7N A;  1G8K B;  4NB9 D;  1O7M A;  3GL0 A;  4QDF A;  4EMJ B;  1ULI A;  2HMJ A;  4NBG D;  4NBB A;  4NB8 D;  4P1B H;  2E74 D;  2NUK A;  2FYU E;  3N0Q A;  3VMH D;  4HM0 A;  4HM5 A;  4H0L D;  4NBH A;  3GKQ A;  2NVG A;  3L70 E;  3VMI D;  2NUM A;  1UUV A;  4H44 D;  2DE5 A;  3AZC A;  4PD4 E;  2NVE A;  2NVF A;  4HM2 A;  3GTS A;  1P84 E;  1G8J B;  4NBE A;  4NBA A;  2DE7 D;  2QJP C;  3VMG D;  5HL4 A;  1Z03 A;  2XR8 A;  3VCP A;  2ZYL A;  4NBC D;  2YFJ A;  1L0N E;  2HMK A;  1O7G A;  2ZT9 D;  3L71 E;  5KKZ C;  4HM7 A;  4P1C H;  1FQT A;  3GCE A;  4NBD A;  2E4P A;  4QUR A;  2QJY C;  1BCC E;  4OGQ D;  5AEU A;  2E75 D;  2JO6 A;  1SJG A;  1EZV E;  3H1H E;  2XRX A;  2IBZ E;  3BCC E;  1RFS A;  4QUQ A;  3GOB A;  4QCK A;  1VF5 D;  2DE6 A;  1NU1 E;  1ZRT E;  2DE5 D;  2B24 A;  2E4Q A;  1JM1 A;  3L74 E;  3C0D A;  2YFL A;  4NB9 A;  2GBW A;  1PP9 E;  3EQQ A; 
#chains in the Genus database with same CATH homology
 4QUP A;  2HMO A;  3CX5 E;  5AEW A;  4NBG A;  1SQB E;  1NYK A;  1SQV E;  2GBX A;  2YVJ B;  3DQY A;  3GTE A;  3GB4 A;  4HKV A;  2BCC E;  2XSH A;  2BMR A;  2HML A;  2QJK C;  2JZA A;  2YIU C;  3L75 E;  3D89 A;  3EN1 A;  4QDC A;  2E76 D;  1NTZ E;  4NBB D;  4QDF B;  1UUW A;  3H1L E;  2XSO A;  1Z01 A;  3CWB E;  2DE7 A;  3GZX A;  1Z02 A;  4HM3 A;  4U3F E;  4HM6 A;  3CXH E;  3VMG A;  3H1K E;  1SQQ E;  2YFI A;  4NBH D;  5KLV E;  1O7P A;  4NBF A;  1L0L E;  4NBC A;  4NBE D;  1PPJ E;  2I7F A;  4PV1 D;  4NBA D;  1WW9 A;  2HMM A;  3GKE A;  4NB8 A;  4HM4 A;  1VM9 A;  2QPZ A;  3GZY A;  1NDO A;  3VMH A;  3VCA A;  1EG9 A;  1ULJ A;  2FYN C;  1NTK E;  2B1X A;  2HMN A;  5CXM A;  3L72 E;  1RIE A;  1WQL A;  4HM8 A;  5BOK A;  4AAY B;  3VMI A;  2Q3W A;  4NBD D;  2BMO A;  4HJL A;  1NTM E;  1O7W A;  1O7H A;  2A06 E;  2D2C D;  4H13 D;  2NWF A;  4HM1 A;  2BMQ A;  1VCK A;  1Q90 C;  3FOU A;  3GL2 A;  3GCF A;  3H1J E;  1KYO E;  2DE6 D;  5KLI C;  4AIV A;  3TGU E;  3L73 E;  1BE3 E;  1SQP E;  4NBF D;  4QDD A;  1KB9 E;  1SQX E;  2CKF A;  3H1I E;  1O7N A;  1G8K B;  4NB9 D;  1O7M A;  3GL0 A;  4QDF A;  4EMJ B;  1ULI A;  2HMJ A;  4NBG D;  4NBB A;  4NB8 D;  4P1B H;  2E74 D;  2NUK A;  2FYU E;  3N0Q A;  3VMH D;  4HM0 A;  4HM5 A;  4H0L D;  4NBH A;  3GKQ A;  2NVG A;  3L70 E;  3VMI D;  2NUM A;  1UUV A;  4H44 D;  2DE5 A;  3AZC A;  4PD4 E;  2NVE A;  2NVF A;  4HM2 A;  3GTS A;  1P84 E;  1G8J B;  4NBE A;  4NBA A;  2DE7 D;  2QJP C;  3VMG D;  5HL4 A;  1Z03 A;  2XR8 A;  3VCP A;  2ZYL A;  4NBC D;  2YFJ A;  1L0N E;  2HMK A;  1O7G A;  2ZT9 D;  3L71 E;  5KKZ C;  4HM7 A;  4P1C H;  1FQT A;  3GCE A;  4NBD A;  2E4P A;  4QUR A;  2QJY C;  1BCC E;  4OGQ D;  5AEU A;  2E75 D;  2JO6 A;  1SJG A;  1EZV E;  3H1H E;  2XRX A;  2IBZ E;  3BCC E;  1RFS A;  4QUQ A;  3GOB A;  4QCK A;  1VF5 D;  2DE6 A;  1NU1 E;  1ZRT E;  2DE5 D;  2B24 A;  2E4Q A;  1JM1 A;  3L74 E;  3C0D A;  2YFL A;  4NB9 A;  2GBW A;  1PP9 E;  3EQQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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