1EG9A

Naphthalene 1,2-dioxygenase with indole bound in the active site.
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords PROTEIN (NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT)
publication title Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 158
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2000-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1eg9A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1eg9A01
2HMNA 3BCCE 1SQBE 3CX5E 2JO6A 4AAYB 1RFSA 3H1JE 4NB8D 4HM5A 1O7PA 1PP9E 2B1XA 3H1LE 2GBWA 4NBGD 1PPJE 1SQXE 4QDFA 5KLIC 3EQQA 4NBEA 3CWBE 2E76D 1KYOE 1ZRTE 2BCCE 2E74D 2QPZA 2YFLA 4H44D 3L70E 4P1BH 3GTEA 3VMGD 1O7WA 3TGUE 4NBHA 5KKZC 2NUKA 1UUWA 2NVGA 2HMKA 2DE6A 2YIUC 2HMMA 4H13D 4NBHD 4NBAA 2XRXA 3VCAA 1NTZE 2IBZE 4NBAD 5AEUA 3GKEA 1SQVE 2BMOA 2NUMA 3C0DA 3GZYA 2XR8A 2QJKC 5KLVE 4HM2A 3H1HE 1ULIA 1P84E 1VCKA 1L0NE 2QJYC 2ZT9D 3L75E 1RIEA 4HKVA 2HMLA 4QDCA 4QDDA 1SQQE 2NVFA 3DQYA 4QUPA 3GL0A 1Q90C 3L71E 1WW9A 1VF5D 3VMIA 2Q3WA 2XSOA 4NB9A 5BOKA 2HMJA 4NBED 3FOUA 1SJGA 1FQTA 3GOBA 4HM0A 4NB9D 1O7NA 3AZCA 4P1CH 1G8JB 5HL4A 2FYUE 3EN1A 4NBFA 1Z03A 4HM8A 2HMOA 4EMJB 3L73E 1Z01A 2DE5A 2DE6D 4HM7A 2YVJB 2E4PA 4NBFD 2JZAA 1KB9E 4QDFB 5CXMA 4NBCA 3GL2A 2CKFA 4OGQD 1Z02A 4NBDA 2B24A 3VMHA 4HM4A 4QURA 1NYKA 2YFIA 3N0QA 4PV1D 3VMHD 1BE3E 3CXHE 2I7FA 3L72E 4QCKA 1G8KB 1NU1E 3GZXA 1EG9A 2ZYLA 2DE7A 1VM9A 1WQLA 3VMID 2NVEA 3L74E 4HJLA 2D2CD 2DE7D 4NB8A 2XSHA 3GTSA 3D89A 4AIVA 4NBGA 2QJPC 2E4QA 2E75D 1JM1A 1BCCE 2DE5D 3GCEA 3VMGA 4PD4E 2FYNC 3H1IE 4QUQA 1EZVE 4NBCD 2YFJA 3GCFA 4HM1A 2A06E 3GKQA 2BMQA 1L0LE 2NWFA 3GB4A 3VCPA 4NBDD 1NTME 1ULJA 1SQPE 2BMRA 4U3FE 1O7GA 1UUVA 4HM3A 1NTKE 4H0LD 4NBBA 5AEWA 1O7MA 1NDOA 4HM6A 1O7HA 3H1KE 2GBXA 4NBBD
chains in the Genus database with same CATH superfamily
2HMNA 3BCCE 1SQBE 3CX5E 2JO6A 4AAYB 1RFSA 3H1JE 4NB8D 4HM5A 1O7PA 1PP9E 2B1XA 3H1LE 2GBWA 4NBGD 1PPJE 1SQXE 4QDFA 5KLIC 3EQQA 4NBEA 3CWBE 2E76D 1KYOE 1ZRTE 2BCCE 2E74D 2QPZA 2YFLA 4H44D 3L70E 4P1BH 3GTEA 3VMGD 1O7WA 3TGUE 4NBHA 5KKZC 2NUKA 1UUWA 2NVGA 2HMKA 2DE6A 2YIUC 2HMMA 4H13D 4NBHD 4NBAA 2XRXA 3VCAA 1NTZE 2IBZE 4NBAD 5AEUA 3GKEA 1SQVE 2BMOA 2NUMA 3C0DA 3GZYA 2XR8A 2QJKC 5KLVE 4HM2A 3H1HE 1ULIA 1P84E 1VCKA 1L0NE 2QJYC 2ZT9D 3L75E 1RIEA 4HKVA 2HMLA 4QDCA 4QDDA 1SQQE 2NVFA 3DQYA 4QUPA 3GL0A 1Q90C 3L71E 1WW9A 1VF5D 3VMIA 2Q3WA 2XSOA 4NB9A 5BOKA 2HMJA 4NBED 3FOUA 1SJGA 1FQTA 3GOBA 4HM0A 4NB9D 1O7NA 3AZCA 4P1CH 1G8JB 5HL4A 2FYUE 3EN1A 4NBFA 1Z03A 4HM8A 2HMOA 4EMJB 3L73E 1Z01A 2DE5A 2DE6D 4HM7A 2YVJB 2E4PA 4NBFD 2JZAA 1KB9E 4QDFB 5CXMA 4NBCA 3GL2A 2CKFA 4OGQD 1Z02A 4NBDA 2B24A 3VMHA 4HM4A 4QURA 1NYKA 2YFIA 3N0QA 4PV1D 3VMHD 1BE3E 3CXHE 2I7FA 3L72E 4QCKA 1G8KB 1NU1E 3GZXA 1EG9A 2ZYLA 2DE7A 1VM9A 1WQLA 3VMID 2NVEA 3L74E 4HJLA 2D2CD 2DE7D 4NB8A 2XSHA 3GTSA 3D89A 4AIVA 4NBGA 2QJPC 2E4QA 2E75D 1JM1A 1BCCE 2DE5D 3GCEA 3VMGA 4PD4E 2FYNC 3H1IE 4QUQA 1EZVE 4NBCD 2YFJA 3GCFA 4HM1A 2A06E 3GKQA 2BMQA 1L0LE 2NWFA 3GB4A 3VCPA 4NBDD 1NTME 1ULJA 1SQPE 2BMRA 4U3FE 1O7GA 1UUVA 4HM3A 1NTKE 4H0LD 4NBBA 5AEWA 1O7MA 1NDOA 4HM6A 1O7HA 3H1KE 2GBXA 4NBBD
chains in the Genus database with same CATH topology
2HMNA 3BCCE 1SQBE 3CX5E 2JO6A 4AAYB 1RFSA 3H1JE 4NB8D 4HM5A 1O7PA 1PP9E 2B1XA 3H1LE 2GBWA 4NBGD 1PPJE 1SQXE 4QDFA 5KLIC 3EQQA 4NBEA 3CWBE 2E76D 1KYOE 1ZRTE 2BCCE 2E74D 2QPZA 2YFLA 4H44D 3L70E 4P1BH 3GTEA 3VMGD 1O7WA 3TGUE 4NBHA 5KKZC 2NUKA 1UUWA 2NVGA 2HMKA 2DE6A 2YIUC 2HMMA 4H13D 4NBHD 4NBAA 2XRXA 3VCAA 1NTZE 2IBZE 4NBAD 5AEUA 3GKEA 1SQVE 2BMOA 2NUMA 3C0DA 3GZYA 2XR8A 2QJKC 5KLVE 4HM2A 3H1HE 1ULIA 1P84E 1VCKA 1L0NE 2QJYC 2ZT9D 3L75E 1RIEA 4HKVA 2HMLA 4QDCA 4QDDA 1SQQE 2NVFA 3DQYA 4QUPA 3GL0A 1Q90C 3L71E 1WW9A 1VF5D 3VMIA 2Q3WA 2XSOA 4NB9A 5BOKA 2HMJA 4NBED 3FOUA 1SJGA 1FQTA 3GOBA 4HM0A 4NB9D 1O7NA 3AZCA 4P1CH 1G8JB 5HL4A 2FYUE 3EN1A 4NBFA 1Z03A 4HM8A 2HMOA 4EMJB 3L73E 1Z01A 2DE5A 2DE6D 4HM7A 2YVJB 2E4PA 4NBFD 2JZAA 1KB9E 4QDFB 5CXMA 4NBCA 3GL2A 2CKFA 4OGQD 1Z02A 4NBDA 2B24A 3VMHA 4HM4A 4QURA 1NYKA 2YFIA 3N0QA 4PV1D 3VMHD 1BE3E 3CXHE 2I7FA 3L72E 4QCKA 1G8KB 1NU1E 3GZXA 1EG9A 2ZYLA 2DE7A 1VM9A 1WQLA 3VMID 2NVEA 3L74E 4HJLA 2D2CD 2DE7D 4NB8A 2XSHA 3GTSA 3D89A 4AIVA 4NBGA 2QJPC 2E4QA 2E75D 1JM1A 1BCCE 2DE5D 3GCEA 3VMGA 4PD4E 2FYNC 3H1IE 4QUQA 1EZVE 4NBCD 2YFJA 3GCFA 4HM1A 2A06E 3GKQA 2BMQA 1L0LE 2NWFA 3GB4A 3VCPA 4NBDD 1NTME 1ULJA 1SQPE 2BMRA 4U3FE 1O7GA 1UUVA 4HM3A 1NTKE 4H0LD 4NBBA 5AEWA 1O7MA 1NDOA 4HM6A 1O7HA 3H1KE 2GBXA 4NBBD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMN A;  3BCC E;  1SQB E;  3CX5 E;  2JO6 A;  4AAY B;  1RFS A;  3H1J E;  4NB8 D;  4HM5 A;  1O7P A;  1PP9 E;  2B1X A;  3H1L E;  2GBW A;  4NBG D;  1PPJ E;  1SQX E;  4QDF A;  5KLI C;  3EQQ A;  4NBE A;  3CWB E;  2E76 D;  1KYO E;  1ZRT E;  2BCC E;  2E74 D;  2QPZ A;  2YFL A;  4H44 D;  3L70 E;  4P1B H;  3GTE A;  3VMG D;  1O7W A;  3TGU E;  4NBH A;  5KKZ C;  2NUK A;  1UUW A;  2NVG A;  2HMK A;  2DE6 A;  2YIU C;  2HMM A;  4H13 D;  4NBH D;  4NBA A;  2XRX A;  3VCA A;  1NTZ E;  2IBZ E;  4NBA D;  5AEU A;  3GKE A;  1SQV E;  2BMO A;  2NUM A;  3C0D A;  3GZY A;  2XR8 A;  2QJK C;  5KLV E;  4HM2 A;  3H1H E;  1ULI A;  1P84 E;  1VCK A;  1L0N E;  2QJY C;  2ZT9 D;  3L75 E;  1RIE A;  4HKV A;  2HML A;  4QDC A;  4QDD A;  1SQQ E;  2NVF A;  3DQY A;  4QUP A;  3GL0 A;  1Q90 C;  3L71 E;  1WW9 A;  1VF5 D;  3VMI A;  2Q3W A;  2XSO A;  4NB9 A;  5BOK A;  2HMJ A;  4NBE D;  3FOU A;  1SJG A;  1FQT A;  3GOB A;  4HM0 A;  4NB9 D;  1O7N A;  3AZC A;  4P1C H;  1G8J B;  5HL4 A;  2FYU E;  3EN1 A;  4NBF A;  1Z03 A;  4HM8 A;  2HMO A;  4EMJ B;  3L73 E;  1Z01 A;  2DE5 A;  2DE6 D;  4HM7 A;  2YVJ B;  2E4P A;  4NBF D;  2JZA A;  1KB9 E;  4QDF B;  5CXM A;  4NBC A;  3GL2 A;  2CKF A;  4OGQ D;  1Z02 A;  4NBD A;  2B24 A;  3VMH A;  4HM4 A;  4QUR A;  1NYK A;  2YFI A;  3N0Q A;  4PV1 D;  3VMH D;  1BE3 E;  3CXH E;  2I7F A;  3L72 E;  4QCK A;  1G8K B;  1NU1 E;  3GZX A;  1EG9 A;  2ZYL A;  2DE7 A;  1VM9 A;  1WQL A;  3VMI D;  2NVE A;  3L74 E;  4HJL A;  2D2C D;  2DE7 D;  4NB8 A;  2XSH A;  3GTS A;  3D89 A;  4AIV A;  4NBG A;  2QJP C;  2E4Q A;  2E75 D;  1JM1 A;  1BCC E;  2DE5 D;  3GCE A;  3VMG A;  4PD4 E;  2FYN C;  3H1I E;  4QUQ A;  1EZV E;  4NBC D;  2YFJ A;  3GCF A;  4HM1 A;  2A06 E;  3GKQ A;  2BMQ A;  1L0L E;  2NWF A;  3GB4 A;  3VCP A;  4NBD D;  1NTM E;  1ULJ A;  1SQP E;  2BMR A;  4U3F E;  1O7G A;  1UUV A;  4HM3 A;  1NTK E;  4H0L D;  4NBB A;  5AEW A;  1O7M A;  1NDO A;  4HM6 A;  1O7H A;  3H1K E;  2GBX A;  4NBB D; 
#chains in the Genus database with same CATH topology
 2HMN A;  3BCC E;  1SQB E;  3CX5 E;  2JO6 A;  4AAY B;  1RFS A;  3H1J E;  4NB8 D;  4HM5 A;  1O7P A;  1PP9 E;  2B1X A;  3H1L E;  2GBW A;  4NBG D;  1PPJ E;  1SQX E;  4QDF A;  5KLI C;  3EQQ A;  4NBE A;  3CWB E;  2E76 D;  1KYO E;  1ZRT E;  2BCC E;  2E74 D;  2QPZ A;  2YFL A;  4H44 D;  3L70 E;  4P1B H;  3GTE A;  3VMG D;  1O7W A;  3TGU E;  4NBH A;  5KKZ C;  2NUK A;  1UUW A;  2NVG A;  2HMK A;  2DE6 A;  2YIU C;  2HMM A;  4H13 D;  4NBH D;  4NBA A;  2XRX A;  3VCA A;  1NTZ E;  2IBZ E;  4NBA D;  5AEU A;  3GKE A;  1SQV E;  2BMO A;  2NUM A;  3C0D A;  3GZY A;  2XR8 A;  2QJK C;  5KLV E;  4HM2 A;  3H1H E;  1ULI A;  1P84 E;  1VCK A;  1L0N E;  2QJY C;  2ZT9 D;  3L75 E;  1RIE A;  4HKV A;  2HML A;  4QDC A;  4QDD A;  1SQQ E;  2NVF A;  3DQY A;  4QUP A;  3GL0 A;  1Q90 C;  3L71 E;  1WW9 A;  1VF5 D;  3VMI A;  2Q3W A;  2XSO A;  4NB9 A;  5BOK A;  2HMJ A;  4NBE D;  3FOU A;  1SJG A;  1FQT A;  3GOB A;  4HM0 A;  4NB9 D;  1O7N A;  3AZC A;  4P1C H;  1G8J B;  5HL4 A;  2FYU E;  3EN1 A;  4NBF A;  1Z03 A;  4HM8 A;  2HMO A;  4EMJ B;  3L73 E;  1Z01 A;  2DE5 A;  2DE6 D;  4HM7 A;  2YVJ B;  2E4P A;  4NBF D;  2JZA A;  1KB9 E;  4QDF B;  5CXM A;  4NBC A;  3GL2 A;  2CKF A;  4OGQ D;  1Z02 A;  4NBD A;  2B24 A;  3VMH A;  4HM4 A;  4QUR A;  1NYK A;  2YFI A;  3N0Q A;  4PV1 D;  3VMH D;  1BE3 E;  3CXH E;  2I7F A;  3L72 E;  4QCK A;  1G8K B;  1NU1 E;  3GZX A;  1EG9 A;  2ZYL A;  2DE7 A;  1VM9 A;  1WQL A;  3VMI D;  2NVE A;  3L74 E;  4HJL A;  2D2C D;  2DE7 D;  4NB8 A;  2XSH A;  3GTS A;  3D89 A;  4AIV A;  4NBG A;  2QJP C;  2E4Q A;  2E75 D;  1JM1 A;  1BCC E;  2DE5 D;  3GCE A;  3VMG A;  4PD4 E;  2FYN C;  3H1I E;  4QUQ A;  1EZV E;  4NBC D;  2YFJ A;  3GCF A;  4HM1 A;  2A06 E;  3GKQ A;  2BMQ A;  1L0L E;  2NWF A;  3GB4 A;  3VCP A;  4NBD D;  1NTM E;  1ULJ A;  1SQP E;  2BMR A;  4U3F E;  1O7G A;  1UUV A;  4HM3 A;  1NTK E;  4H0L D;  4NBB A;  5AEW A;  1O7M A;  1NDO A;  4HM6 A;  1O7H A;  3H1K E;  2GBX A;  4NBB D; 
#chains in the Genus database with same CATH homology
 2HMN A;  3BCC E;  1SQB E;  3CX5 E;  2JO6 A;  4AAY B;  1RFS A;  3H1J E;  4NB8 D;  4HM5 A;  1O7P A;  1PP9 E;  2B1X A;  3H1L E;  2GBW A;  4NBG D;  1PPJ E;  1SQX E;  4QDF A;  5KLI C;  3EQQ A;  4NBE A;  3CWB E;  2E76 D;  1KYO E;  1ZRT E;  2BCC E;  2E74 D;  2QPZ A;  2YFL A;  4H44 D;  3L70 E;  4P1B H;  3GTE A;  3VMG D;  1O7W A;  3TGU E;  4NBH A;  5KKZ C;  2NUK A;  1UUW A;  2NVG A;  2HMK A;  2DE6 A;  2YIU C;  2HMM A;  4H13 D;  4NBH D;  4NBA A;  2XRX A;  3VCA A;  1NTZ E;  2IBZ E;  4NBA D;  5AEU A;  3GKE A;  1SQV E;  2BMO A;  2NUM A;  3C0D A;  3GZY A;  2XR8 A;  2QJK C;  5KLV E;  4HM2 A;  3H1H E;  1ULI A;  1P84 E;  1VCK A;  1L0N E;  2QJY C;  2ZT9 D;  3L75 E;  1RIE A;  4HKV A;  2HML A;  4QDC A;  4QDD A;  1SQQ E;  2NVF A;  3DQY A;  4QUP A;  3GL0 A;  1Q90 C;  3L71 E;  1WW9 A;  1VF5 D;  3VMI A;  2Q3W A;  2XSO A;  4NB9 A;  5BOK A;  2HMJ A;  4NBE D;  3FOU A;  1SJG A;  1FQT A;  3GOB A;  4HM0 A;  4NB9 D;  1O7N A;  3AZC A;  4P1C H;  1G8J B;  5HL4 A;  2FYU E;  3EN1 A;  4NBF A;  1Z03 A;  4HM8 A;  2HMO A;  4EMJ B;  3L73 E;  1Z01 A;  2DE5 A;  2DE6 D;  4HM7 A;  2YVJ B;  2E4P A;  4NBF D;  2JZA A;  1KB9 E;  4QDF B;  5CXM A;  4NBC A;  3GL2 A;  2CKF A;  4OGQ D;  1Z02 A;  4NBD A;  2B24 A;  3VMH A;  4HM4 A;  4QUR A;  1NYK A;  2YFI A;  3N0Q A;  4PV1 D;  3VMH D;  1BE3 E;  3CXH E;  2I7F A;  3L72 E;  4QCK A;  1G8K B;  1NU1 E;  3GZX A;  1EG9 A;  2ZYL A;  2DE7 A;  1VM9 A;  1WQL A;  3VMI D;  2NVE A;  3L74 E;  4HJL A;  2D2C D;  2DE7 D;  4NB8 A;  2XSH A;  3GTS A;  3D89 A;  4AIV A;  4NBG A;  2QJP C;  2E4Q A;  2E75 D;  1JM1 A;  1BCC E;  2DE5 D;  3GCE A;  3VMG A;  4PD4 E;  2FYN C;  3H1I E;  4QUQ A;  1EZV E;  4NBC D;  2YFJ A;  3GCF A;  4HM1 A;  2A06 E;  3GKQ A;  2BMQ A;  1L0L E;  2NWF A;  3GB4 A;  3VCP A;  4NBD D;  1NTM E;  1ULJ A;  1SQP E;  2BMR A;  4U3F E;  1O7G A;  1UUV A;  4HM3 A;  1NTK E;  4H0L D;  4NBB A;  5AEW A;  1O7M A;  1NDO A;  4HM6 A;  1O7H A;  3H1K E;  2GBX A;  4NBB D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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