4HM3A

Naphthalene 1,2-dioxygenase bound to ethylbenzene
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to ethylbenzene
rcsb
source organism Pseudomonas sp. c18
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm3A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm3A01
3VMGA 2DE5A 1NYKA 2FYNC 4QDCA 3H1LE 5KLIC 1ZRTE 3CWBE 3L72E 3TGUE 1FQTA 3VMID 1WW9A 2ZT9D 2JZAA 2E4QA 4NBGA 2B1XA 3GTEA 1PP9E 4HM7A 4QDFB 1SQVE 1P84E 2I7FA 1G8KB 4U3FE 3VMHA 1VF5D 2HMMA 2DE6D 4HKVA 4NBFD 3GL2A 2D2CD 4P1CH 1L0LE 4QURA 1VCKA 2BMOA 3H1HE 2HMNA 2BMQA 2DE7A 4H0LD 4NBEA 3GCEA 3VCAA 2ZYLA 4NBHA 3H1KE 4HM3A 2QJKC 4NBCD 4NB8D 2JO6A 5KLVE 2B24A 3L73E 2NUKA 2XRXA 2HMKA 4QDFA 1BCCE 1EG9A 1SQPE 1VM9A 4NBDD 3VCPA 3GZXA 2QJYC 2YIUC 4HM2A 2E75D 1O7WA 3L70E 4PD4E 3VMIA 3CX5E 2HMLA 4P1BH 4NB9D 4H13D 3L74E 2E74D 2E4PA 2NVEA 2XR8A 1ULJA 1ULIA 3AZCA 4HM4A 4HM0A 1SQQE 1NTME 4HM1A 4OGQD 4NBBA 2NUMA 1JM1A 2QJPC 3EQQA 3D89A 2GBWA 2YVJB 2HMJA 3GTSA 1O7GA 2Q3WA 1Z01A 4NB8A 4NBGD 4NBAA 1RFSA 4H44D 2XSHA 4NBDA 1WQLA 3H1IE 3FOUA 2NVFA 4HM8A 3VMHD 2GBXA 3BCCE 1SQXE 2YFIA 1G8JB 3DQYA 1O7NA 2DE7D 1O7MA 4AIVA 5HL4A 1Z02A 2BMRA 5BOKA 4NB9A 4NBHD 1O7PA 5AEUA 2IBZE 2HMOA 2A06E 2YFJA 3GKEA 3L71E 2DE6A 4NBFA 2XSOA 3VMGD 2DE5D 1NU1E 1O7HA 1UUVA 1NTZE 1PPJE 3GB4A 2NVGA 3H1JE 2CKFA 3GKQA 1UUWA 3C0DA 4QUPA 1KYOE 4HM5A 4PV1D 4QCKA 1Z03A 3L75E 3GCFA 1BE3E 2NWFA 5CXMA 1RIEA 4NBCA 1EZVE 1KB9E 4QDDA 2YFLA 1NDOA 5KKZC 2E76D 1SJGA 4HJLA 1L0NE 2QPZA 3EN1A 1SQBE 4EMJB 3N0QA 4NBED 1Q90C 4NBBD 1NTKE 3GOBA 4HM6A 2FYUE 3CXHE 3GZYA 3GL0A 4QUQA 4NBAD 4AAYB 5AEWA 2BCCE
chains in the Genus database with same CATH superfamily
3VMGA 2DE5A 1NYKA 2FYNC 4QDCA 3H1LE 5KLIC 1ZRTE 3CWBE 3L72E 3TGUE 1FQTA 3VMID 1WW9A 2ZT9D 2JZAA 2E4QA 4NBGA 2B1XA 3GTEA 1PP9E 4HM7A 4QDFB 1SQVE 1P84E 2I7FA 1G8KB 4U3FE 3VMHA 1VF5D 2HMMA 2DE6D 4HKVA 4NBFD 3GL2A 2D2CD 4P1CH 1L0LE 4QURA 1VCKA 2BMOA 3H1HE 2HMNA 2BMQA 2DE7A 4H0LD 4NBEA 3GCEA 3VCAA 2ZYLA 4NBHA 3H1KE 4HM3A 2QJKC 4NBCD 4NB8D 2JO6A 5KLVE 2B24A 3L73E 2NUKA 2XRXA 2HMKA 4QDFA 1BCCE 1EG9A 1SQPE 1VM9A 4NBDD 3VCPA 3GZXA 2QJYC 2YIUC 4HM2A 2E75D 1O7WA 3L70E 4PD4E 3VMIA 3CX5E 2HMLA 4P1BH 4NB9D 4H13D 3L74E 2E74D 2E4PA 2NVEA 2XR8A 1ULJA 1ULIA 3AZCA 4HM4A 4HM0A 1SQQE 1NTME 4HM1A 4OGQD 4NBBA 2NUMA 1JM1A 2QJPC 3EQQA 3D89A 2GBWA 2YVJB 2HMJA 3GTSA 1O7GA 2Q3WA 1Z01A 4NB8A 4NBGD 4NBAA 1RFSA 4H44D 2XSHA 4NBDA 1WQLA 3H1IE 3FOUA 2NVFA 4HM8A 3VMHD 2GBXA 3BCCE 1SQXE 2YFIA 1G8JB 3DQYA 1O7NA 2DE7D 1O7MA 4AIVA 5HL4A 1Z02A 2BMRA 5BOKA 4NB9A 4NBHD 1O7PA 5AEUA 2IBZE 2HMOA 2A06E 2YFJA 3GKEA 3L71E 2DE6A 4NBFA 2XSOA 3VMGD 2DE5D 1NU1E 1O7HA 1UUVA 1NTZE 1PPJE 3GB4A 2NVGA 3H1JE 2CKFA 3GKQA 1UUWA 3C0DA 4QUPA 1KYOE 4HM5A 4PV1D 4QCKA 1Z03A 3L75E 3GCFA 1BE3E 2NWFA 5CXMA 1RIEA 4NBCA 1EZVE 1KB9E 4QDDA 2YFLA 1NDOA 5KKZC 2E76D 1SJGA 4HJLA 1L0NE 2QPZA 3EN1A 1SQBE 4EMJB 3N0QA 4NBED 1Q90C 4NBBD 1NTKE 3GOBA 4HM6A 2FYUE 3CXHE 3GZYA 3GL0A 4QUQA 4NBAD 4AAYB 5AEWA 2BCCE
chains in the Genus database with same CATH topology
3VMGA 2DE5A 1NYKA 2FYNC 4QDCA 3H1LE 5KLIC 1ZRTE 3CWBE 3L72E 3TGUE 1FQTA 3VMID 1WW9A 2ZT9D 2JZAA 2E4QA 4NBGA 2B1XA 3GTEA 1PP9E 4HM7A 4QDFB 1SQVE 1P84E 2I7FA 1G8KB 4U3FE 3VMHA 1VF5D 2HMMA 2DE6D 4HKVA 4NBFD 3GL2A 2D2CD 4P1CH 1L0LE 4QURA 1VCKA 2BMOA 3H1HE 2HMNA 2BMQA 2DE7A 4H0LD 4NBEA 3GCEA 3VCAA 2ZYLA 4NBHA 3H1KE 4HM3A 2QJKC 4NBCD 4NB8D 2JO6A 5KLVE 2B24A 3L73E 2NUKA 2XRXA 2HMKA 4QDFA 1BCCE 1EG9A 1SQPE 1VM9A 4NBDD 3VCPA 3GZXA 2QJYC 2YIUC 4HM2A 2E75D 1O7WA 3L70E 4PD4E 3VMIA 3CX5E 2HMLA 4P1BH 4NB9D 4H13D 3L74E 2E74D 2E4PA 2NVEA 2XR8A 1ULJA 1ULIA 3AZCA 4HM4A 4HM0A 1SQQE 1NTME 4HM1A 4OGQD 4NBBA 2NUMA 1JM1A 2QJPC 3EQQA 3D89A 2GBWA 2YVJB 2HMJA 3GTSA 1O7GA 2Q3WA 1Z01A 4NB8A 4NBGD 4NBAA 1RFSA 4H44D 2XSHA 4NBDA 1WQLA 3H1IE 3FOUA 2NVFA 4HM8A 3VMHD 2GBXA 3BCCE 1SQXE 2YFIA 1G8JB 3DQYA 1O7NA 2DE7D 1O7MA 4AIVA 5HL4A 1Z02A 2BMRA 5BOKA 4NB9A 4NBHD 1O7PA 5AEUA 2IBZE 2HMOA 2A06E 2YFJA 3GKEA 3L71E 2DE6A 4NBFA 2XSOA 3VMGD 2DE5D 1NU1E 1O7HA 1UUVA 1NTZE 1PPJE 3GB4A 2NVGA 3H1JE 2CKFA 3GKQA 1UUWA 3C0DA 4QUPA 1KYOE 4HM5A 4PV1D 4QCKA 1Z03A 3L75E 3GCFA 1BE3E 2NWFA 5CXMA 1RIEA 4NBCA 1EZVE 1KB9E 4QDDA 2YFLA 1NDOA 5KKZC 2E76D 1SJGA 4HJLA 1L0NE 2QPZA 3EN1A 1SQBE 4EMJB 3N0QA 4NBED 1Q90C 4NBBD 1NTKE 3GOBA 4HM6A 2FYUE 3CXHE 3GZYA 3GL0A 4QUQA 4NBAD 4AAYB 5AEWA 2BCCE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMG A;  2DE5 A;  1NYK A;  2FYN C;  4QDC A;  3H1L E;  5KLI C;  1ZRT E;  3CWB E;  3L72 E;  3TGU E;  1FQT A;  3VMI D;  1WW9 A;  2ZT9 D;  2JZA A;  2E4Q A;  4NBG A;  2B1X A;  3GTE A;  1PP9 E;  4HM7 A;  4QDF B;  1SQV E;  1P84 E;  2I7F A;  1G8K B;  4U3F E;  3VMH A;  1VF5 D;  2HMM A;  2DE6 D;  4HKV A;  4NBF D;  3GL2 A;  2D2C D;  4P1C H;  1L0L E;  4QUR A;  1VCK A;  2BMO A;  3H1H E;  2HMN A;  2BMQ A;  2DE7 A;  4H0L D;  4NBE A;  3GCE A;  3VCA A;  2ZYL A;  4NBH A;  3H1K E;  4HM3 A;  2QJK C;  4NBC D;  4NB8 D;  2JO6 A;  5KLV E;  2B24 A;  3L73 E;  2NUK A;  2XRX A;  2HMK A;  4QDF A;  1BCC E;  1EG9 A;  1SQP E;  1VM9 A;  4NBD D;  3VCP A;  3GZX A;  2QJY C;  2YIU C;  4HM2 A;  2E75 D;  1O7W A;  3L70 E;  4PD4 E;  3VMI A;  3CX5 E;  2HML A;  4P1B H;  4NB9 D;  4H13 D;  3L74 E;  2E74 D;  2E4P A;  2NVE A;  2XR8 A;  1ULJ A;  1ULI A;  3AZC A;  4HM4 A;  4HM0 A;  1SQQ E;  1NTM E;  4HM1 A;  4OGQ D;  4NBB A;  2NUM A;  1JM1 A;  2QJP C;  3EQQ A;  3D89 A;  2GBW A;  2YVJ B;  2HMJ A;  3GTS A;  1O7G A;  2Q3W A;  1Z01 A;  4NB8 A;  4NBG D;  4NBA A;  1RFS A;  4H44 D;  2XSH A;  4NBD A;  1WQL A;  3H1I E;  3FOU A;  2NVF A;  4HM8 A;  3VMH D;  2GBX A;  3BCC E;  1SQX E;  2YFI A;  1G8J B;  3DQY A;  1O7N A;  2DE7 D;  1O7M A;  4AIV A;  5HL4 A;  1Z02 A;  2BMR A;  5BOK A;  4NB9 A;  4NBH D;  1O7P A;  5AEU A;  2IBZ E;  2HMO A;  2A06 E;  2YFJ A;  3GKE A;  3L71 E;  2DE6 A;  4NBF A;  2XSO A;  3VMG D;  2DE5 D;  1NU1 E;  1O7H A;  1UUV A;  1NTZ E;  1PPJ E;  3GB4 A;  2NVG A;  3H1J E;  2CKF A;  3GKQ A;  1UUW A;  3C0D A;  4QUP A;  1KYO E;  4HM5 A;  4PV1 D;  4QCK A;  1Z03 A;  3L75 E;  3GCF A;  1BE3 E;  2NWF A;  5CXM A;  1RIE A;  4NBC A;  1EZV E;  1KB9 E;  4QDD A;  2YFL A;  1NDO A;  5KKZ C;  2E76 D;  1SJG A;  4HJL A;  1L0N E;  2QPZ A;  3EN1 A;  1SQB E;  4EMJ B;  3N0Q A;  4NBE D;  1Q90 C;  4NBB D;  1NTK E;  3GOB A;  4HM6 A;  2FYU E;  3CXH E;  3GZY A;  3GL0 A;  4QUQ A;  4NBA D;  4AAY B;  5AEW A;  2BCC E; 
#chains in the Genus database with same CATH topology
 3VMG A;  2DE5 A;  1NYK A;  2FYN C;  4QDC A;  3H1L E;  5KLI C;  1ZRT E;  3CWB E;  3L72 E;  3TGU E;  1FQT A;  3VMI D;  1WW9 A;  2ZT9 D;  2JZA A;  2E4Q A;  4NBG A;  2B1X A;  3GTE A;  1PP9 E;  4HM7 A;  4QDF B;  1SQV E;  1P84 E;  2I7F A;  1G8K B;  4U3F E;  3VMH A;  1VF5 D;  2HMM A;  2DE6 D;  4HKV A;  4NBF D;  3GL2 A;  2D2C D;  4P1C H;  1L0L E;  4QUR A;  1VCK A;  2BMO A;  3H1H E;  2HMN A;  2BMQ A;  2DE7 A;  4H0L D;  4NBE A;  3GCE A;  3VCA A;  2ZYL A;  4NBH A;  3H1K E;  4HM3 A;  2QJK C;  4NBC D;  4NB8 D;  2JO6 A;  5KLV E;  2B24 A;  3L73 E;  2NUK A;  2XRX A;  2HMK A;  4QDF A;  1BCC E;  1EG9 A;  1SQP E;  1VM9 A;  4NBD D;  3VCP A;  3GZX A;  2QJY C;  2YIU C;  4HM2 A;  2E75 D;  1O7W A;  3L70 E;  4PD4 E;  3VMI A;  3CX5 E;  2HML A;  4P1B H;  4NB9 D;  4H13 D;  3L74 E;  2E74 D;  2E4P A;  2NVE A;  2XR8 A;  1ULJ A;  1ULI A;  3AZC A;  4HM4 A;  4HM0 A;  1SQQ E;  1NTM E;  4HM1 A;  4OGQ D;  4NBB A;  2NUM A;  1JM1 A;  2QJP C;  3EQQ A;  3D89 A;  2GBW A;  2YVJ B;  2HMJ A;  3GTS A;  1O7G A;  2Q3W A;  1Z01 A;  4NB8 A;  4NBG D;  4NBA A;  1RFS A;  4H44 D;  2XSH A;  4NBD A;  1WQL A;  3H1I E;  3FOU A;  2NVF A;  4HM8 A;  3VMH D;  2GBX A;  3BCC E;  1SQX E;  2YFI A;  1G8J B;  3DQY A;  1O7N A;  2DE7 D;  1O7M A;  4AIV A;  5HL4 A;  1Z02 A;  2BMR A;  5BOK A;  4NB9 A;  4NBH D;  1O7P A;  5AEU A;  2IBZ E;  2HMO A;  2A06 E;  2YFJ A;  3GKE A;  3L71 E;  2DE6 A;  4NBF A;  2XSO A;  3VMG D;  2DE5 D;  1NU1 E;  1O7H A;  1UUV A;  1NTZ E;  1PPJ E;  3GB4 A;  2NVG A;  3H1J E;  2CKF A;  3GKQ A;  1UUW A;  3C0D A;  4QUP A;  1KYO E;  4HM5 A;  4PV1 D;  4QCK A;  1Z03 A;  3L75 E;  3GCF A;  1BE3 E;  2NWF A;  5CXM A;  1RIE A;  4NBC A;  1EZV E;  1KB9 E;  4QDD A;  2YFL A;  1NDO A;  5KKZ C;  2E76 D;  1SJG A;  4HJL A;  1L0N E;  2QPZ A;  3EN1 A;  1SQB E;  4EMJ B;  3N0Q A;  4NBE D;  1Q90 C;  4NBB D;  1NTK E;  3GOB A;  4HM6 A;  2FYU E;  3CXH E;  3GZY A;  3GL0 A;  4QUQ A;  4NBA D;  4AAY B;  5AEW A;  2BCC E; 
#chains in the Genus database with same CATH homology
 3VMG A;  2DE5 A;  1NYK A;  2FYN C;  4QDC A;  3H1L E;  5KLI C;  1ZRT E;  3CWB E;  3L72 E;  3TGU E;  1FQT A;  3VMI D;  1WW9 A;  2ZT9 D;  2JZA A;  2E4Q A;  4NBG A;  2B1X A;  3GTE A;  1PP9 E;  4HM7 A;  4QDF B;  1SQV E;  1P84 E;  2I7F A;  1G8K B;  4U3F E;  3VMH A;  1VF5 D;  2HMM A;  2DE6 D;  4HKV A;  4NBF D;  3GL2 A;  2D2C D;  4P1C H;  1L0L E;  4QUR A;  1VCK A;  2BMO A;  3H1H E;  2HMN A;  2BMQ A;  2DE7 A;  4H0L D;  4NBE A;  3GCE A;  3VCA A;  2ZYL A;  4NBH A;  3H1K E;  4HM3 A;  2QJK C;  4NBC D;  4NB8 D;  2JO6 A;  5KLV E;  2B24 A;  3L73 E;  2NUK A;  2XRX A;  2HMK A;  4QDF A;  1BCC E;  1EG9 A;  1SQP E;  1VM9 A;  4NBD D;  3VCP A;  3GZX A;  2QJY C;  2YIU C;  4HM2 A;  2E75 D;  1O7W A;  3L70 E;  4PD4 E;  3VMI A;  3CX5 E;  2HML A;  4P1B H;  4NB9 D;  4H13 D;  3L74 E;  2E74 D;  2E4P A;  2NVE A;  2XR8 A;  1ULJ A;  1ULI A;  3AZC A;  4HM4 A;  4HM0 A;  1SQQ E;  1NTM E;  4HM1 A;  4OGQ D;  4NBB A;  2NUM A;  1JM1 A;  2QJP C;  3EQQ A;  3D89 A;  2GBW A;  2YVJ B;  2HMJ A;  3GTS A;  1O7G A;  2Q3W A;  1Z01 A;  4NB8 A;  4NBG D;  4NBA A;  1RFS A;  4H44 D;  2XSH A;  4NBD A;  1WQL A;  3H1I E;  3FOU A;  2NVF A;  4HM8 A;  3VMH D;  2GBX A;  3BCC E;  1SQX E;  2YFI A;  1G8J B;  3DQY A;  1O7N A;  2DE7 D;  1O7M A;  4AIV A;  5HL4 A;  1Z02 A;  2BMR A;  5BOK A;  4NB9 A;  4NBH D;  1O7P A;  5AEU A;  2IBZ E;  2HMO A;  2A06 E;  2YFJ A;  3GKE A;  3L71 E;  2DE6 A;  4NBF A;  2XSO A;  3VMG D;  2DE5 D;  1NU1 E;  1O7H A;  1UUV A;  1NTZ E;  1PPJ E;  3GB4 A;  2NVG A;  3H1J E;  2CKF A;  3GKQ A;  1UUW A;  3C0D A;  4QUP A;  1KYO E;  4HM5 A;  4PV1 D;  4QCK A;  1Z03 A;  3L75 E;  3GCF A;  1BE3 E;  2NWF A;  5CXM A;  1RIE A;  4NBC A;  1EZV E;  1KB9 E;  4QDD A;  2YFL A;  1NDO A;  5KKZ C;  2E76 D;  1SJG A;  4HJL A;  1L0N E;  2QPZ A;  3EN1 A;  1SQB E;  4EMJ B;  3N0Q A;  4NBE D;  1Q90 C;  4NBB D;  1NTK E;  3GOB A;  4HM6 A;  2FYU E;  3CXH E;  3GZY A;  3GL0 A;  4QUQ A;  4NBA D;  4AAY B;  5AEW A;  2BCC E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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