4HM3A

Naphthalene 1,2-dioxygenase bound to ethylbenzene
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to ethylbenzene
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm3A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm3A01
4P1CH 4NBCD 3FOUA 4HM4A 4HM8A 4NB8A 4HM5A 4QCKA 2HMJA 2ZYLA 2QPZA 4NB8D 4QDFA 3H1IE 1L0NE 1NTZE 3GTSA 5KKZC 4PV1D 1VF5D 4HJLA 5CXMA 1FQTA 2NUMA 1SQXE 4AAYB 5HL4A 1UUVA 4NBAA 2DE7A 2HMLA 1G8KB 2NVEA 3AZCA 2QJPC 1KYOE 2GBXA 1ULJA 2QJYC 2DE7D 4NBAD 4NB9A 1EZVE 1NYKA 5KLIC 4HM1A 3TGUE 3GCFA 4HM2A 4QDFB 2XSOA 2GBWA 4NB9D 1RIEA 2FYNC 2DE6A 2E4PA 4NBDA 1KB9E 4HM3A 3L73E 2HMNA 4HM0A 2DE6D 4NBDD 1UUWA 4U3FE 3VMGA 3CX5E 1L0LE 5AEUA 1VCKA 1Z02A 3H1LE 5KLVE 3VMGD 3GKEA 2YFLA 2HMKA 3VMHA 1WW9A 1NDOA 1SQVE 5AEWA 3L74E 4H0LD 3VMHD 4NBGA 1SQBE 2Q3WA 4HM7A 3GZYA 4P1BH 1Z03A 1SQPE 2NVFA 4AIVA 4NBGD 3C0DA 3EN1A 2HMOA 1RFSA 1PPJE 2QJKC 2CKFA 1BE3E 1VM9A 3VMIA 2YIUC 2I7FA 3H1KE 1ULIA 1P84E 1O7WA 1NTME 2E75D 2E74D 4QDCA 3VMID 3GKQA 2FYUE 3CXHE 3H1JE 4H13D 2YFJA 1O7HA 1SQQE 4OGQD 1EG9A 2B1XA 1WQLA 2XSHA 1O7MA 3L70E 4NBBA 1NTKE 1O7GA 2IBZE 3GL0A 2NWFA 3VCPA 2A06E 3GOBA 4NBBD 3GCEA 2D2CD 3EQQA 2B24A 2BCCE 5BOKA 1PP9E 4NBHA 4HM6A 2BMQA 1SJGA 3GTEA 2BMOA 2NVGA 3GL2A 4NBHD 2NUKA 2XRXA 3GB4A 4NBFA 2XR8A 2YVJB 3GZXA 1O7PA 2JZAA 3L72E 4QURA 3N0QA 2YFIA 3DQYA 4NBFD 3VCAA 4EMJB 4H44D 1O7NA 3CWBE 2E76D 3D89A 2JO6A 2DE5A 2ZT9D 3H1HE 4QDDA 3BCCE 2DE5D 4HKVA 1Z01A 4PD4E 1G8JB 4NBEA 1ZRTE 1BCCE 3L71E 4QUPA 1JM1A 2E4QA 3L75E 4NBED 2HMMA 4QUQA 4NBCA 2BMRA 1NU1E 1Q90C
chains in the Genus database with same CATH superfamily
4P1CH 4NBCD 3FOUA 4HM4A 4HM8A 4NB8A 4HM5A 4QCKA 2HMJA 2ZYLA 2QPZA 4NB8D 4QDFA 3H1IE 1L0NE 1NTZE 3GTSA 5KKZC 4PV1D 1VF5D 4HJLA 5CXMA 1FQTA 2NUMA 1SQXE 4AAYB 5HL4A 1UUVA 4NBAA 2DE7A 2HMLA 1G8KB 2NVEA 3AZCA 2QJPC 1KYOE 2GBXA 1ULJA 2QJYC 2DE7D 4NBAD 4NB9A 1EZVE 1NYKA 5KLIC 4HM1A 3TGUE 3GCFA 4HM2A 4QDFB 2XSOA 2GBWA 4NB9D 1RIEA 2FYNC 2DE6A 2E4PA 4NBDA 1KB9E 4HM3A 3L73E 2HMNA 4HM0A 2DE6D 4NBDD 1UUWA 4U3FE 3VMGA 3CX5E 1L0LE 5AEUA 1VCKA 1Z02A 3H1LE 5KLVE 3VMGD 3GKEA 2YFLA 2HMKA 3VMHA 1WW9A 1NDOA 1SQVE 5AEWA 3L74E 4H0LD 3VMHD 4NBGA 1SQBE 2Q3WA 4HM7A 3GZYA 4P1BH 1Z03A 1SQPE 2NVFA 4AIVA 4NBGD 3C0DA 3EN1A 2HMOA 1RFSA 1PPJE 2QJKC 2CKFA 1BE3E 1VM9A 3VMIA 2YIUC 2I7FA 3H1KE 1ULIA 1P84E 1O7WA 1NTME 2E75D 2E74D 4QDCA 3VMID 3GKQA 2FYUE 3CXHE 3H1JE 4H13D 2YFJA 1O7HA 1SQQE 4OGQD 1EG9A 2B1XA 1WQLA 2XSHA 1O7MA 3L70E 4NBBA 1NTKE 1O7GA 2IBZE 3GL0A 2NWFA 3VCPA 2A06E 3GOBA 4NBBD 3GCEA 2D2CD 3EQQA 2B24A 2BCCE 5BOKA 1PP9E 4NBHA 4HM6A 2BMQA 1SJGA 3GTEA 2BMOA 2NVGA 3GL2A 4NBHD 2NUKA 2XRXA 3GB4A 4NBFA 2XR8A 2YVJB 3GZXA 1O7PA 2JZAA 3L72E 4QURA 3N0QA 2YFIA 3DQYA 4NBFD 3VCAA 4EMJB 4H44D 1O7NA 3CWBE 2E76D 3D89A 2JO6A 2DE5A 2ZT9D 3H1HE 4QDDA 3BCCE 2DE5D 4HKVA 1Z01A 4PD4E 1G8JB 4NBEA 1ZRTE 1BCCE 3L71E 4QUPA 1JM1A 2E4QA 3L75E 4NBED 2HMMA 4QUQA 4NBCA 2BMRA 1NU1E 1Q90C
chains in the Genus database with same CATH topology
4P1CH 4NBCD 3FOUA 4HM4A 4HM8A 4NB8A 4HM5A 4QCKA 2HMJA 2ZYLA 2QPZA 4NB8D 4QDFA 3H1IE 1L0NE 1NTZE 3GTSA 5KKZC 4PV1D 1VF5D 4HJLA 5CXMA 1FQTA 2NUMA 1SQXE 4AAYB 5HL4A 1UUVA 4NBAA 2DE7A 2HMLA 1G8KB 2NVEA 3AZCA 2QJPC 1KYOE 2GBXA 1ULJA 2QJYC 2DE7D 4NBAD 4NB9A 1EZVE 1NYKA 5KLIC 4HM1A 3TGUE 3GCFA 4HM2A 4QDFB 2XSOA 2GBWA 4NB9D 1RIEA 2FYNC 2DE6A 2E4PA 4NBDA 1KB9E 4HM3A 3L73E 2HMNA 4HM0A 2DE6D 4NBDD 1UUWA 4U3FE 3VMGA 3CX5E 1L0LE 5AEUA 1VCKA 1Z02A 3H1LE 5KLVE 3VMGD 3GKEA 2YFLA 2HMKA 3VMHA 1WW9A 1NDOA 1SQVE 5AEWA 3L74E 4H0LD 3VMHD 4NBGA 1SQBE 2Q3WA 4HM7A 3GZYA 4P1BH 1Z03A 1SQPE 2NVFA 4AIVA 4NBGD 3C0DA 3EN1A 2HMOA 1RFSA 1PPJE 2QJKC 2CKFA 1BE3E 1VM9A 3VMIA 2YIUC 2I7FA 3H1KE 1ULIA 1P84E 1O7WA 1NTME 2E75D 2E74D 4QDCA 3VMID 3GKQA 2FYUE 3CXHE 3H1JE 4H13D 2YFJA 1O7HA 1SQQE 4OGQD 1EG9A 2B1XA 1WQLA 2XSHA 1O7MA 3L70E 4NBBA 1NTKE 1O7GA 2IBZE 3GL0A 2NWFA 3VCPA 2A06E 3GOBA 4NBBD 3GCEA 2D2CD 3EQQA 2B24A 2BCCE 5BOKA 1PP9E 4NBHA 4HM6A 2BMQA 1SJGA 3GTEA 2BMOA 2NVGA 3GL2A 4NBHD 2NUKA 2XRXA 3GB4A 4NBFA 2XR8A 2YVJB 3GZXA 1O7PA 2JZAA 3L72E 4QURA 3N0QA 2YFIA 3DQYA 4NBFD 3VCAA 4EMJB 4H44D 1O7NA 3CWBE 2E76D 3D89A 2JO6A 2DE5A 2ZT9D 3H1HE 4QDDA 3BCCE 2DE5D 4HKVA 1Z01A 4PD4E 1G8JB 4NBEA 1ZRTE 1BCCE 3L71E 4QUPA 1JM1A 2E4QA 3L75E 4NBED 2HMMA 4QUQA 4NBCA 2BMRA 1NU1E 1Q90C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P1C H;  4NBC D;  3FOU A;  4HM4 A;  4HM8 A;  4NB8 A;  4HM5 A;  4QCK A;  2HMJ A;  2ZYL A;  2QPZ A;  4NB8 D;  4QDF A;  3H1I E;  1L0N E;  1NTZ E;  3GTS A;  5KKZ C;  4PV1 D;  1VF5 D;  4HJL A;  5CXM A;  1FQT A;  2NUM A;  1SQX E;  4AAY B;  5HL4 A;  1UUV A;  4NBA A;  2DE7 A;  2HML A;  1G8K B;  2NVE A;  3AZC A;  2QJP C;  1KYO E;  2GBX A;  1ULJ A;  2QJY C;  2DE7 D;  4NBA D;  4NB9 A;  1EZV E;  1NYK A;  5KLI C;  4HM1 A;  3TGU E;  3GCF A;  4HM2 A;  4QDF B;  2XSO A;  2GBW A;  4NB9 D;  1RIE A;  2FYN C;  2DE6 A;  2E4P A;  4NBD A;  1KB9 E;  4HM3 A;  3L73 E;  2HMN A;  4HM0 A;  2DE6 D;  4NBD D;  1UUW A;  4U3F E;  3VMG A;  3CX5 E;  1L0L E;  5AEU A;  1VCK A;  1Z02 A;  3H1L E;  5KLV E;  3VMG D;  3GKE A;  2YFL A;  2HMK A;  3VMH A;  1WW9 A;  1NDO A;  1SQV E;  5AEW A;  3L74 E;  4H0L D;  3VMH D;  4NBG A;  1SQB E;  2Q3W A;  4HM7 A;  3GZY A;  4P1B H;  1Z03 A;  1SQP E;  2NVF A;  4AIV A;  4NBG D;  3C0D A;  3EN1 A;  2HMO A;  1RFS A;  1PPJ E;  2QJK C;  2CKF A;  1BE3 E;  1VM9 A;  3VMI A;  2YIU C;  2I7F A;  3H1K E;  1ULI A;  1P84 E;  1O7W A;  1NTM E;  2E75 D;  2E74 D;  4QDC A;  3VMI D;  3GKQ A;  2FYU E;  3CXH E;  3H1J E;  4H13 D;  2YFJ A;  1O7H A;  1SQQ E;  4OGQ D;  1EG9 A;  2B1X A;  1WQL A;  2XSH A;  1O7M A;  3L70 E;  4NBB A;  1NTK E;  1O7G A;  2IBZ E;  3GL0 A;  2NWF A;  3VCP A;  2A06 E;  3GOB A;  4NBB D;  3GCE A;  2D2C D;  3EQQ A;  2B24 A;  2BCC E;  5BOK A;  1PP9 E;  4NBH A;  4HM6 A;  2BMQ A;  1SJG A;  3GTE A;  2BMO A;  2NVG A;  3GL2 A;  4NBH D;  2NUK A;  2XRX A;  3GB4 A;  4NBF A;  2XR8 A;  2YVJ B;  3GZX A;  1O7P A;  2JZA A;  3L72 E;  4QUR A;  3N0Q A;  2YFI A;  3DQY A;  4NBF D;  3VCA A;  4EMJ B;  4H44 D;  1O7N A;  3CWB E;  2E76 D;  3D89 A;  2JO6 A;  2DE5 A;  2ZT9 D;  3H1H E;  4QDD A;  3BCC E;  2DE5 D;  4HKV A;  1Z01 A;  4PD4 E;  1G8J B;  4NBE A;  1ZRT E;  1BCC E;  3L71 E;  4QUP A;  1JM1 A;  2E4Q A;  3L75 E;  4NBE D;  2HMM A;  4QUQ A;  4NBC A;  2BMR A;  1NU1 E;  1Q90 C; 
#chains in the Genus database with same CATH topology
 4P1C H;  4NBC D;  3FOU A;  4HM4 A;  4HM8 A;  4NB8 A;  4HM5 A;  4QCK A;  2HMJ A;  2ZYL A;  2QPZ A;  4NB8 D;  4QDF A;  3H1I E;  1L0N E;  1NTZ E;  3GTS A;  5KKZ C;  4PV1 D;  1VF5 D;  4HJL A;  5CXM A;  1FQT A;  2NUM A;  1SQX E;  4AAY B;  5HL4 A;  1UUV A;  4NBA A;  2DE7 A;  2HML A;  1G8K B;  2NVE A;  3AZC A;  2QJP C;  1KYO E;  2GBX A;  1ULJ A;  2QJY C;  2DE7 D;  4NBA D;  4NB9 A;  1EZV E;  1NYK A;  5KLI C;  4HM1 A;  3TGU E;  3GCF A;  4HM2 A;  4QDF B;  2XSO A;  2GBW A;  4NB9 D;  1RIE A;  2FYN C;  2DE6 A;  2E4P A;  4NBD A;  1KB9 E;  4HM3 A;  3L73 E;  2HMN A;  4HM0 A;  2DE6 D;  4NBD D;  1UUW A;  4U3F E;  3VMG A;  3CX5 E;  1L0L E;  5AEU A;  1VCK A;  1Z02 A;  3H1L E;  5KLV E;  3VMG D;  3GKE A;  2YFL A;  2HMK A;  3VMH A;  1WW9 A;  1NDO A;  1SQV E;  5AEW A;  3L74 E;  4H0L D;  3VMH D;  4NBG A;  1SQB E;  2Q3W A;  4HM7 A;  3GZY A;  4P1B H;  1Z03 A;  1SQP E;  2NVF A;  4AIV A;  4NBG D;  3C0D A;  3EN1 A;  2HMO A;  1RFS A;  1PPJ E;  2QJK C;  2CKF A;  1BE3 E;  1VM9 A;  3VMI A;  2YIU C;  2I7F A;  3H1K E;  1ULI A;  1P84 E;  1O7W A;  1NTM E;  2E75 D;  2E74 D;  4QDC A;  3VMI D;  3GKQ A;  2FYU E;  3CXH E;  3H1J E;  4H13 D;  2YFJ A;  1O7H A;  1SQQ E;  4OGQ D;  1EG9 A;  2B1X A;  1WQL A;  2XSH A;  1O7M A;  3L70 E;  4NBB A;  1NTK E;  1O7G A;  2IBZ E;  3GL0 A;  2NWF A;  3VCP A;  2A06 E;  3GOB A;  4NBB D;  3GCE A;  2D2C D;  3EQQ A;  2B24 A;  2BCC E;  5BOK A;  1PP9 E;  4NBH A;  4HM6 A;  2BMQ A;  1SJG A;  3GTE A;  2BMO A;  2NVG A;  3GL2 A;  4NBH D;  2NUK A;  2XRX A;  3GB4 A;  4NBF A;  2XR8 A;  2YVJ B;  3GZX A;  1O7P A;  2JZA A;  3L72 E;  4QUR A;  3N0Q A;  2YFI A;  3DQY A;  4NBF D;  3VCA A;  4EMJ B;  4H44 D;  1O7N A;  3CWB E;  2E76 D;  3D89 A;  2JO6 A;  2DE5 A;  2ZT9 D;  3H1H E;  4QDD A;  3BCC E;  2DE5 D;  4HKV A;  1Z01 A;  4PD4 E;  1G8J B;  4NBE A;  1ZRT E;  1BCC E;  3L71 E;  4QUP A;  1JM1 A;  2E4Q A;  3L75 E;  4NBE D;  2HMM A;  4QUQ A;  4NBC A;  2BMR A;  1NU1 E;  1Q90 C; 
#chains in the Genus database with same CATH homology
 4P1C H;  4NBC D;  3FOU A;  4HM4 A;  4HM8 A;  4NB8 A;  4HM5 A;  4QCK A;  2HMJ A;  2ZYL A;  2QPZ A;  4NB8 D;  4QDF A;  3H1I E;  1L0N E;  1NTZ E;  3GTS A;  5KKZ C;  4PV1 D;  1VF5 D;  4HJL A;  5CXM A;  1FQT A;  2NUM A;  1SQX E;  4AAY B;  5HL4 A;  1UUV A;  4NBA A;  2DE7 A;  2HML A;  1G8K B;  2NVE A;  3AZC A;  2QJP C;  1KYO E;  2GBX A;  1ULJ A;  2QJY C;  2DE7 D;  4NBA D;  4NB9 A;  1EZV E;  1NYK A;  5KLI C;  4HM1 A;  3TGU E;  3GCF A;  4HM2 A;  4QDF B;  2XSO A;  2GBW A;  4NB9 D;  1RIE A;  2FYN C;  2DE6 A;  2E4P A;  4NBD A;  1KB9 E;  4HM3 A;  3L73 E;  2HMN A;  4HM0 A;  2DE6 D;  4NBD D;  1UUW A;  4U3F E;  3VMG A;  3CX5 E;  1L0L E;  5AEU A;  1VCK A;  1Z02 A;  3H1L E;  5KLV E;  3VMG D;  3GKE A;  2YFL A;  2HMK A;  3VMH A;  1WW9 A;  1NDO A;  1SQV E;  5AEW A;  3L74 E;  4H0L D;  3VMH D;  4NBG A;  1SQB E;  2Q3W A;  4HM7 A;  3GZY A;  4P1B H;  1Z03 A;  1SQP E;  2NVF A;  4AIV A;  4NBG D;  3C0D A;  3EN1 A;  2HMO A;  1RFS A;  1PPJ E;  2QJK C;  2CKF A;  1BE3 E;  1VM9 A;  3VMI A;  2YIU C;  2I7F A;  3H1K E;  1ULI A;  1P84 E;  1O7W A;  1NTM E;  2E75 D;  2E74 D;  4QDC A;  3VMI D;  3GKQ A;  2FYU E;  3CXH E;  3H1J E;  4H13 D;  2YFJ A;  1O7H A;  1SQQ E;  4OGQ D;  1EG9 A;  2B1X A;  1WQL A;  2XSH A;  1O7M A;  3L70 E;  4NBB A;  1NTK E;  1O7G A;  2IBZ E;  3GL0 A;  2NWF A;  3VCP A;  2A06 E;  3GOB A;  4NBB D;  3GCE A;  2D2C D;  3EQQ A;  2B24 A;  2BCC E;  5BOK A;  1PP9 E;  4NBH A;  4HM6 A;  2BMQ A;  1SJG A;  3GTE A;  2BMO A;  2NVG A;  3GL2 A;  4NBH D;  2NUK A;  2XRX A;  3GB4 A;  4NBF A;  2XR8 A;  2YVJ B;  3GZX A;  1O7P A;  2JZA A;  3L72 E;  4QUR A;  3N0Q A;  2YFI A;  3DQY A;  4NBF D;  3VCA A;  4EMJ B;  4H44 D;  1O7N A;  3CWB E;  2E76 D;  3D89 A;  2JO6 A;  2DE5 A;  2ZT9 D;  3H1H E;  4QDD A;  3BCC E;  2DE5 D;  4HKV A;  1Z01 A;  4PD4 E;  1G8J B;  4NBE A;  1ZRT E;  1BCC E;  3L71 E;  4QUP A;  1JM1 A;  2E4Q A;  3L75 E;  4NBE D;  2HMM A;  4QUQ A;  4NBC A;  2BMR A;  1NU1 E;  1Q90 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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