4HM3A

Naphthalene 1,2-dioxygenase bound to ethylbenzene
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to ethylbenzene
rcsb
molecule tags Oxidoreductase/oxidoreductase inhibitor
source organism Pseudomonas sp. c18
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm3A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm3A01
1L0NE 1UUWA 1SQXE 3AZCA 1O7GA 4NBBD 2BMOA 4NB9D 3L75E 1NYKA 5HL4A 4AIVA 3N0QA 3FOUA 4HM0A 1RIEA 1PPJE 2B1XA 2E76D 4HKVA 3H1IE 4HM2A 3EQQA 3GZXA 1P84E 3VMID 4P1CH 1G8JB 2YFJA 2ZYLA 1EZVE 3L72E 1NTZE 2DE5A 3L70E 4NBCA 4NBDA 1VF5D 2Q3WA 1SQPE 2NVFA 2FYUE 2XSHA 4QDDA 2YFIA 2BCCE 4QDCA 1WW9A 2BMQA 3VMHD 2CKFA 1Z01A 1Z02A 4NBHD 4QCKA 2IBZE 1EG9A 3GKEA 1NTKE 4OGQD 1NU1E 4U3FE 2YFLA 3GTEA 3H1JE 4NBAA 2E4PA 4NBGD 3VMGA 4NBFA 2HMJA 3GTSA 1UUVA 2HMNA 2DE7A 4H0LD 4NBED 4QDFB 1Q90C 4HM4A 3TGUE 2FYNC 2DE6A 2JZAA 1ULIA 1O7WA 2GBWA 3L74E 5CXMA 2NVGA 4NB8A 4QURA 2I7FA 3GOBA 1ULJA 5KKZC 2XSOA 2XR8A 1RFSA 4PV1D 2JO6A 3H1HE 3GZYA 4QUPA 1BE3E 2E75D 2HMMA 2E74D 1BCCE 3L73E 1NDOA 1WQLA 2BMRA 5KLIC 2YVJB 4HM7A 2DE5D 4NBCD 4NBDD 3BCCE 2QJPC 1KB9E 3H1KE 3CX5E 2QJKC 3GL2A 4QDFA 2HMKA 4H13D 4NBBA 3D89A 4P1BH 2NUMA 4H44D 4NB9A 1O7NA 2E4QA 3L71E 2ZT9D 3VCAA 3VCPA 4NBGA 2A06E 2B24A 3H1LE 3VMIA 5BOKA 2NWFA 2NUKA 5KLVE 4NBAD 3GCFA 1O7HA 2NVEA 4HM3A 1PP9E 3VMGD 4NBFD 5AEWA 1SQBE 2QPZA 2DE7D 1JM1A 4HJLA 3CXHE 3VMHA 3DQYA 1SJGA 2DE6D 1L0LE 5AEUA 4HM8A 2GBXA 4QUQA 3C0DA 1O7MA 2HMOA 3GKQA 4NBHA 2XRXA 1SQQE 4NB8D 3GCEA 2D2CD 4AAYB 1VCKA 1NTME 4PD4E 4HM1A 1O7PA 3GL0A 3GB4A 2QJYC 1Z03A 1KYOE 3EN1A 1VM9A 2YIUC 2HMLA 1SQVE 3CWBE 4NBEA 1FQTA 4HM6A 1ZRTE 1G8KB 4EMJB 4HM5A
chains in the Genus database with same CATH superfamily
1L0NE 1UUWA 1SQXE 3AZCA 1O7GA 4NBBD 2BMOA 4NB9D 3L75E 1NYKA 5HL4A 4AIVA 3N0QA 3FOUA 4HM0A 1RIEA 1PPJE 2B1XA 2E76D 4HKVA 3H1IE 4HM2A 3EQQA 3GZXA 1P84E 3VMID 4P1CH 1G8JB 2YFJA 2ZYLA 1EZVE 3L72E 1NTZE 2DE5A 3L70E 4NBCA 4NBDA 1VF5D 2Q3WA 1SQPE 2NVFA 2FYUE 2XSHA 4QDDA 2YFIA 2BCCE 4QDCA 1WW9A 2BMQA 3VMHD 2CKFA 1Z01A 1Z02A 4NBHD 4QCKA 2IBZE 1EG9A 3GKEA 1NTKE 4OGQD 1NU1E 4U3FE 2YFLA 3GTEA 3H1JE 4NBAA 2E4PA 4NBGD 3VMGA 4NBFA 2HMJA 3GTSA 1UUVA 2HMNA 2DE7A 4H0LD 4NBED 4QDFB 1Q90C 4HM4A 3TGUE 2FYNC 2DE6A 2JZAA 1ULIA 1O7WA 2GBWA 3L74E 5CXMA 2NVGA 4NB8A 4QURA 2I7FA 3GOBA 1ULJA 5KKZC 2XSOA 2XR8A 1RFSA 4PV1D 2JO6A 3H1HE 3GZYA 4QUPA 1BE3E 2E75D 2HMMA 2E74D 1BCCE 3L73E 1NDOA 1WQLA 2BMRA 5KLIC 2YVJB 4HM7A 2DE5D 4NBCD 4NBDD 3BCCE 2QJPC 1KB9E 3H1KE 3CX5E 2QJKC 3GL2A 4QDFA 2HMKA 4H13D 4NBBA 3D89A 4P1BH 2NUMA 4H44D 4NB9A 1O7NA 2E4QA 3L71E 2ZT9D 3VCAA 3VCPA 4NBGA 2A06E 2B24A 3H1LE 3VMIA 5BOKA 2NWFA 2NUKA 5KLVE 4NBAD 3GCFA 1O7HA 2NVEA 4HM3A 1PP9E 3VMGD 4NBFD 5AEWA 1SQBE 2QPZA 2DE7D 1JM1A 4HJLA 3CXHE 3VMHA 3DQYA 1SJGA 2DE6D 1L0LE 5AEUA 4HM8A 2GBXA 4QUQA 3C0DA 1O7MA 2HMOA 3GKQA 4NBHA 2XRXA 1SQQE 4NB8D 3GCEA 2D2CD 4AAYB 1VCKA 1NTME 4PD4E 4HM1A 1O7PA 3GL0A 3GB4A 2QJYC 1Z03A 1KYOE 3EN1A 1VM9A 2YIUC 2HMLA 1SQVE 3CWBE 4NBEA 1FQTA 4HM6A 1ZRTE 1G8KB 4EMJB 4HM5A
chains in the Genus database with same CATH topology
1L0NE 1UUWA 1SQXE 3AZCA 1O7GA 4NBBD 2BMOA 4NB9D 3L75E 1NYKA 5HL4A 4AIVA 3N0QA 3FOUA 4HM0A 1RIEA 1PPJE 2B1XA 2E76D 4HKVA 3H1IE 4HM2A 3EQQA 3GZXA 1P84E 3VMID 4P1CH 1G8JB 2YFJA 2ZYLA 1EZVE 3L72E 1NTZE 2DE5A 3L70E 4NBCA 4NBDA 1VF5D 2Q3WA 1SQPE 2NVFA 2FYUE 2XSHA 4QDDA 2YFIA 2BCCE 4QDCA 1WW9A 2BMQA 3VMHD 2CKFA 1Z01A 1Z02A 4NBHD 4QCKA 2IBZE 1EG9A 3GKEA 1NTKE 4OGQD 1NU1E 4U3FE 2YFLA 3GTEA 3H1JE 4NBAA 2E4PA 4NBGD 3VMGA 4NBFA 2HMJA 3GTSA 1UUVA 2HMNA 2DE7A 4H0LD 4NBED 4QDFB 1Q90C 4HM4A 3TGUE 2FYNC 2DE6A 2JZAA 1ULIA 1O7WA 2GBWA 3L74E 5CXMA 2NVGA 4NB8A 4QURA 2I7FA 3GOBA 1ULJA 5KKZC 2XSOA 2XR8A 1RFSA 4PV1D 2JO6A 3H1HE 3GZYA 4QUPA 1BE3E 2E75D 2HMMA 2E74D 1BCCE 3L73E 1NDOA 1WQLA 2BMRA 5KLIC 2YVJB 4HM7A 2DE5D 4NBCD 4NBDD 3BCCE 2QJPC 1KB9E 3H1KE 3CX5E 2QJKC 3GL2A 4QDFA 2HMKA 4H13D 4NBBA 3D89A 4P1BH 2NUMA 4H44D 4NB9A 1O7NA 2E4QA 3L71E 2ZT9D 3VCAA 3VCPA 4NBGA 2A06E 2B24A 3H1LE 3VMIA 5BOKA 2NWFA 2NUKA 5KLVE 4NBAD 3GCFA 1O7HA 2NVEA 4HM3A 1PP9E 3VMGD 4NBFD 5AEWA 1SQBE 2QPZA 2DE7D 1JM1A 4HJLA 3CXHE 3VMHA 3DQYA 1SJGA 2DE6D 1L0LE 5AEUA 4HM8A 2GBXA 4QUQA 3C0DA 1O7MA 2HMOA 3GKQA 4NBHA 2XRXA 1SQQE 4NB8D 3GCEA 2D2CD 4AAYB 1VCKA 1NTME 4PD4E 4HM1A 1O7PA 3GL0A 3GB4A 2QJYC 1Z03A 1KYOE 3EN1A 1VM9A 2YIUC 2HMLA 1SQVE 3CWBE 4NBEA 1FQTA 4HM6A 1ZRTE 1G8KB 4EMJB 4HM5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L0N E;  1UUW A;  1SQX E;  3AZC A;  1O7G A;  4NBB D;  2BMO A;  4NB9 D;  3L75 E;  1NYK A;  5HL4 A;  4AIV A;  3N0Q A;  3FOU A;  4HM0 A;  1RIE A;  1PPJ E;  2B1X A;  2E76 D;  4HKV A;  3H1I E;  4HM2 A;  3EQQ A;  3GZX A;  1P84 E;  3VMI D;  4P1C H;  1G8J B;  2YFJ A;  2ZYL A;  1EZV E;  3L72 E;  1NTZ E;  2DE5 A;  3L70 E;  4NBC A;  4NBD A;  1VF5 D;  2Q3W A;  1SQP E;  2NVF A;  2FYU E;  2XSH A;  4QDD A;  2YFI A;  2BCC E;  4QDC A;  1WW9 A;  2BMQ A;  3VMH D;  2CKF A;  1Z01 A;  1Z02 A;  4NBH D;  4QCK A;  2IBZ E;  1EG9 A;  3GKE A;  1NTK E;  4OGQ D;  1NU1 E;  4U3F E;  2YFL A;  3GTE A;  3H1J E;  4NBA A;  2E4P A;  4NBG D;  3VMG A;  4NBF A;  2HMJ A;  3GTS A;  1UUV A;  2HMN A;  2DE7 A;  4H0L D;  4NBE D;  4QDF B;  1Q90 C;  4HM4 A;  3TGU E;  2FYN C;  2DE6 A;  2JZA A;  1ULI A;  1O7W A;  2GBW A;  3L74 E;  5CXM A;  2NVG A;  4NB8 A;  4QUR A;  2I7F A;  3GOB A;  1ULJ A;  5KKZ C;  2XSO A;  2XR8 A;  1RFS A;  4PV1 D;  2JO6 A;  3H1H E;  3GZY A;  4QUP A;  1BE3 E;  2E75 D;  2HMM A;  2E74 D;  1BCC E;  3L73 E;  1NDO A;  1WQL A;  2BMR A;  5KLI C;  2YVJ B;  4HM7 A;  2DE5 D;  4NBC D;  4NBD D;  3BCC E;  2QJP C;  1KB9 E;  3H1K E;  3CX5 E;  2QJK C;  3GL2 A;  4QDF A;  2HMK A;  4H13 D;  4NBB A;  3D89 A;  4P1B H;  2NUM A;  4H44 D;  4NB9 A;  1O7N A;  2E4Q A;  3L71 E;  2ZT9 D;  3VCA A;  3VCP A;  4NBG A;  2A06 E;  2B24 A;  3H1L E;  3VMI A;  5BOK A;  2NWF A;  2NUK A;  5KLV E;  4NBA D;  3GCF A;  1O7H A;  2NVE A;  4HM3 A;  1PP9 E;  3VMG D;  4NBF D;  5AEW A;  1SQB E;  2QPZ A;  2DE7 D;  1JM1 A;  4HJL A;  3CXH E;  3VMH A;  3DQY A;  1SJG A;  2DE6 D;  1L0L E;  5AEU A;  4HM8 A;  2GBX A;  4QUQ A;  3C0D A;  1O7M A;  2HMO A;  3GKQ A;  4NBH A;  2XRX A;  1SQQ E;  4NB8 D;  3GCE A;  2D2C D;  4AAY B;  1VCK A;  1NTM E;  4PD4 E;  4HM1 A;  1O7P A;  3GL0 A;  3GB4 A;  2QJY C;  1Z03 A;  1KYO E;  3EN1 A;  1VM9 A;  2YIU C;  2HML A;  1SQV E;  3CWB E;  4NBE A;  1FQT A;  4HM6 A;  1ZRT E;  1G8K B;  4EMJ B;  4HM5 A; 
#chains in the Genus database with same CATH topology
 1L0N E;  1UUW A;  1SQX E;  3AZC A;  1O7G A;  4NBB D;  2BMO A;  4NB9 D;  3L75 E;  1NYK A;  5HL4 A;  4AIV A;  3N0Q A;  3FOU A;  4HM0 A;  1RIE A;  1PPJ E;  2B1X A;  2E76 D;  4HKV A;  3H1I E;  4HM2 A;  3EQQ A;  3GZX A;  1P84 E;  3VMI D;  4P1C H;  1G8J B;  2YFJ A;  2ZYL A;  1EZV E;  3L72 E;  1NTZ E;  2DE5 A;  3L70 E;  4NBC A;  4NBD A;  1VF5 D;  2Q3W A;  1SQP E;  2NVF A;  2FYU E;  2XSH A;  4QDD A;  2YFI A;  2BCC E;  4QDC A;  1WW9 A;  2BMQ A;  3VMH D;  2CKF A;  1Z01 A;  1Z02 A;  4NBH D;  4QCK A;  2IBZ E;  1EG9 A;  3GKE A;  1NTK E;  4OGQ D;  1NU1 E;  4U3F E;  2YFL A;  3GTE A;  3H1J E;  4NBA A;  2E4P A;  4NBG D;  3VMG A;  4NBF A;  2HMJ A;  3GTS A;  1UUV A;  2HMN A;  2DE7 A;  4H0L D;  4NBE D;  4QDF B;  1Q90 C;  4HM4 A;  3TGU E;  2FYN C;  2DE6 A;  2JZA A;  1ULI A;  1O7W A;  2GBW A;  3L74 E;  5CXM A;  2NVG A;  4NB8 A;  4QUR A;  2I7F A;  3GOB A;  1ULJ A;  5KKZ C;  2XSO A;  2XR8 A;  1RFS A;  4PV1 D;  2JO6 A;  3H1H E;  3GZY A;  4QUP A;  1BE3 E;  2E75 D;  2HMM A;  2E74 D;  1BCC E;  3L73 E;  1NDO A;  1WQL A;  2BMR A;  5KLI C;  2YVJ B;  4HM7 A;  2DE5 D;  4NBC D;  4NBD D;  3BCC E;  2QJP C;  1KB9 E;  3H1K E;  3CX5 E;  2QJK C;  3GL2 A;  4QDF A;  2HMK A;  4H13 D;  4NBB A;  3D89 A;  4P1B H;  2NUM A;  4H44 D;  4NB9 A;  1O7N A;  2E4Q A;  3L71 E;  2ZT9 D;  3VCA A;  3VCP A;  4NBG A;  2A06 E;  2B24 A;  3H1L E;  3VMI A;  5BOK A;  2NWF A;  2NUK A;  5KLV E;  4NBA D;  3GCF A;  1O7H A;  2NVE A;  4HM3 A;  1PP9 E;  3VMG D;  4NBF D;  5AEW A;  1SQB E;  2QPZ A;  2DE7 D;  1JM1 A;  4HJL A;  3CXH E;  3VMH A;  3DQY A;  1SJG A;  2DE6 D;  1L0L E;  5AEU A;  4HM8 A;  2GBX A;  4QUQ A;  3C0D A;  1O7M A;  2HMO A;  3GKQ A;  4NBH A;  2XRX A;  1SQQ E;  4NB8 D;  3GCE A;  2D2C D;  4AAY B;  1VCK A;  1NTM E;  4PD4 E;  4HM1 A;  1O7P A;  3GL0 A;  3GB4 A;  2QJY C;  1Z03 A;  1KYO E;  3EN1 A;  1VM9 A;  2YIU C;  2HML A;  1SQV E;  3CWB E;  4NBE A;  1FQT A;  4HM6 A;  1ZRT E;  1G8K B;  4EMJ B;  4HM5 A; 
#chains in the Genus database with same CATH homology
 1L0N E;  1UUW A;  1SQX E;  3AZC A;  1O7G A;  4NBB D;  2BMO A;  4NB9 D;  3L75 E;  1NYK A;  5HL4 A;  4AIV A;  3N0Q A;  3FOU A;  4HM0 A;  1RIE A;  1PPJ E;  2B1X A;  2E76 D;  4HKV A;  3H1I E;  4HM2 A;  3EQQ A;  3GZX A;  1P84 E;  3VMI D;  4P1C H;  1G8J B;  2YFJ A;  2ZYL A;  1EZV E;  3L72 E;  1NTZ E;  2DE5 A;  3L70 E;  4NBC A;  4NBD A;  1VF5 D;  2Q3W A;  1SQP E;  2NVF A;  2FYU E;  2XSH A;  4QDD A;  2YFI A;  2BCC E;  4QDC A;  1WW9 A;  2BMQ A;  3VMH D;  2CKF A;  1Z01 A;  1Z02 A;  4NBH D;  4QCK A;  2IBZ E;  1EG9 A;  3GKE A;  1NTK E;  4OGQ D;  1NU1 E;  4U3F E;  2YFL A;  3GTE A;  3H1J E;  4NBA A;  2E4P A;  4NBG D;  3VMG A;  4NBF A;  2HMJ A;  3GTS A;  1UUV A;  2HMN A;  2DE7 A;  4H0L D;  4NBE D;  4QDF B;  1Q90 C;  4HM4 A;  3TGU E;  2FYN C;  2DE6 A;  2JZA A;  1ULI A;  1O7W A;  2GBW A;  3L74 E;  5CXM A;  2NVG A;  4NB8 A;  4QUR A;  2I7F A;  3GOB A;  1ULJ A;  5KKZ C;  2XSO A;  2XR8 A;  1RFS A;  4PV1 D;  2JO6 A;  3H1H E;  3GZY A;  4QUP A;  1BE3 E;  2E75 D;  2HMM A;  2E74 D;  1BCC E;  3L73 E;  1NDO A;  1WQL A;  2BMR A;  5KLI C;  2YVJ B;  4HM7 A;  2DE5 D;  4NBC D;  4NBD D;  3BCC E;  2QJP C;  1KB9 E;  3H1K E;  3CX5 E;  2QJK C;  3GL2 A;  4QDF A;  2HMK A;  4H13 D;  4NBB A;  3D89 A;  4P1B H;  2NUM A;  4H44 D;  4NB9 A;  1O7N A;  2E4Q A;  3L71 E;  2ZT9 D;  3VCA A;  3VCP A;  4NBG A;  2A06 E;  2B24 A;  3H1L E;  3VMI A;  5BOK A;  2NWF A;  2NUK A;  5KLV E;  4NBA D;  3GCF A;  1O7H A;  2NVE A;  4HM3 A;  1PP9 E;  3VMG D;  4NBF D;  5AEW A;  1SQB E;  2QPZ A;  2DE7 D;  1JM1 A;  4HJL A;  3CXH E;  3VMH A;  3DQY A;  1SJG A;  2DE6 D;  1L0L E;  5AEU A;  4HM8 A;  2GBX A;  4QUQ A;  3C0D A;  1O7M A;  2HMO A;  3GKQ A;  4NBH A;  2XRX A;  1SQQ E;  4NB8 D;  3GCE A;  2D2C D;  4AAY B;  1VCK A;  1NTM E;  4PD4 E;  4HM1 A;  1O7P A;  3GL0 A;  3GB4 A;  2QJY C;  1Z03 A;  1KYO E;  3EN1 A;  1VM9 A;  2YIU C;  2HML A;  1SQV E;  3CWB E;  4NBE A;  1FQT A;  4HM6 A;  1ZRT E;  1G8K B;  4EMJ B;  4HM5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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