4HM3A

Naphthalene 1,2-dioxygenase bound to ethylbenzene
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to ethylbenzene
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm3A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm3A01
1JM1A 1PPJE 4HM8A 1O7GA 1SQXE 2HMOA 2E74D 2YVJB 2BMRA 1ZRTE 4HM5A 1O7WA 2XSHA 2B24A 3L71E 1SQQE 2QJPC 2NVEA 1KYOE 3VCPA 1UUWA 3N0QA 4H0LD 3H1JE 2E4QA 4EMJB 5AEUA 1SJGA 1EG9A 2YIUC 3CX5E 5AEWA 2QPZA 3VMHA 4QDCA 1O7PA 2YFIA 3GZYA 4H13D 5CXMA 3VMHD 2BMOA 1SQBE 1O7HA 3H1IE 2A06E 5KKZC 3D89A 4QDFA 2DE7D 3C0DA 4HM4A 4OGQD 4NBDA 1O7NA 1NU1E 2FYNC 2ZT9D 3GTEA 4NBFD 3GKEA 1O7MA 4QCKA 4QDFB 2NVGA 4NBDD 1WQLA 2HMKA 5KLVE 4NB8D 2XRXA 1WW9A 1VCKA 4U3FE 2IBZE 4NBGA 2XR8A 2GBXA 2JZAA 3L75E 3FOUA 1NDOA 4HKVA 3CXHE 2BMQA 4HM1A 4P1CH 2QJKC 4NBGD 4NBED 3GCEA 3VCAA 3VMGA 2YFLA 4NBHA 3L73E 2E4PA 4H44D 3CWBE 3L72E 2I7FA 4HJLA 4AAYB 1Q90C 3VMGD 2DE7A 4NBAA 2GBWA 4NBHD 4NB9A 4HM0A 3TGUE 4NBFA 1VF5D 3GL0A 1L0NE 4NBAD 2NUKA 3VMIA 4NB9D 4AIVA 4HM6A 5BOKA 4NB8A 5HL4A 2DE5A 2E75D 3L70E 4PV1D 1UUVA 1VM9A 4PD4E 3EQQA 3VMID 4NBCA 2DE6A 2ZYLA 3H1KE 2FYUE 3GL2A 2DE5D 3GZXA 3GOBA 1SQVE 3H1LE 4NBCD 1RFSA 4NBEA 2DE6D 1Z01A 1ULIA 1Z03A 1NTME 1Z02A 2Q3WA 3DQYA 4QUPA 4QUQA 2JO6A 4HM3A 3EN1A 1SQPE 4HM2A 1PP9E 2E76D 1EZVE 2YFJA 2HMJA 2NWFA 2BCCE 1NYKA 1ULJA 1L0LE 1BCCE 4P1BH 5KLIC 3H1HE 3L74E 4QURA 1G8KB 2NUMA 3GCFA 2CKFA 2B1XA 2HMLA 1KB9E 1NTKE 2QJYC 1BE3E 3GTSA 1RIEA 3AZCA 1NTZE 2XSOA 1G8JB 2HMNA 3GKQA 4NBBA 4QDDA 1P84E 2NVFA 4HM7A 3GB4A 2D2CD 1FQTA 2HMMA 4NBBD 3BCCE
chains in the Genus database with same CATH superfamily
1JM1A 1PPJE 4HM8A 1O7GA 1SQXE 2HMOA 2E74D 2YVJB 2BMRA 1ZRTE 4HM5A 1O7WA 2XSHA 2B24A 3L71E 1SQQE 2QJPC 2NVEA 1KYOE 3VCPA 1UUWA 3N0QA 4H0LD 3H1JE 2E4QA 4EMJB 5AEUA 1SJGA 1EG9A 2YIUC 3CX5E 5AEWA 2QPZA 3VMHA 4QDCA 1O7PA 2YFIA 3GZYA 4H13D 5CXMA 3VMHD 2BMOA 1SQBE 1O7HA 3H1IE 2A06E 5KKZC 3D89A 4QDFA 2DE7D 3C0DA 4HM4A 4OGQD 4NBDA 1O7NA 1NU1E 2FYNC 2ZT9D 3GTEA 4NBFD 3GKEA 1O7MA 4QCKA 4QDFB 2NVGA 4NBDD 1WQLA 2HMKA 5KLVE 4NB8D 2XRXA 1WW9A 1VCKA 4U3FE 2IBZE 4NBGA 2XR8A 2GBXA 2JZAA 3L75E 3FOUA 1NDOA 4HKVA 3CXHE 2BMQA 4HM1A 4P1CH 2QJKC 4NBGD 4NBED 3GCEA 3VCAA 3VMGA 2YFLA 4NBHA 3L73E 2E4PA 4H44D 3CWBE 3L72E 2I7FA 4HJLA 4AAYB 1Q90C 3VMGD 2DE7A 4NBAA 2GBWA 4NBHD 4NB9A 4HM0A 3TGUE 4NBFA 1VF5D 3GL0A 1L0NE 4NBAD 2NUKA 3VMIA 4NB9D 4AIVA 4HM6A 5BOKA 4NB8A 5HL4A 2DE5A 2E75D 3L70E 4PV1D 1UUVA 1VM9A 4PD4E 3EQQA 3VMID 4NBCA 2DE6A 2ZYLA 3H1KE 2FYUE 3GL2A 2DE5D 3GZXA 3GOBA 1SQVE 3H1LE 4NBCD 1RFSA 4NBEA 2DE6D 1Z01A 1ULIA 1Z03A 1NTME 1Z02A 2Q3WA 3DQYA 4QUPA 4QUQA 2JO6A 4HM3A 3EN1A 1SQPE 4HM2A 1PP9E 2E76D 1EZVE 2YFJA 2HMJA 2NWFA 2BCCE 1NYKA 1ULJA 1L0LE 1BCCE 4P1BH 5KLIC 3H1HE 3L74E 4QURA 1G8KB 2NUMA 3GCFA 2CKFA 2B1XA 2HMLA 1KB9E 1NTKE 2QJYC 1BE3E 3GTSA 1RIEA 3AZCA 1NTZE 2XSOA 1G8JB 2HMNA 3GKQA 4NBBA 4QDDA 1P84E 2NVFA 4HM7A 3GB4A 2D2CD 1FQTA 2HMMA 4NBBD 3BCCE
chains in the Genus database with same CATH topology
1JM1A 1PPJE 4HM8A 1O7GA 1SQXE 2HMOA 2E74D 2YVJB 2BMRA 1ZRTE 4HM5A 1O7WA 2XSHA 2B24A 3L71E 1SQQE 2QJPC 2NVEA 1KYOE 3VCPA 1UUWA 3N0QA 4H0LD 3H1JE 2E4QA 4EMJB 5AEUA 1SJGA 1EG9A 2YIUC 3CX5E 5AEWA 2QPZA 3VMHA 4QDCA 1O7PA 2YFIA 3GZYA 4H13D 5CXMA 3VMHD 2BMOA 1SQBE 1O7HA 3H1IE 2A06E 5KKZC 3D89A 4QDFA 2DE7D 3C0DA 4HM4A 4OGQD 4NBDA 1O7NA 1NU1E 2FYNC 2ZT9D 3GTEA 4NBFD 3GKEA 1O7MA 4QCKA 4QDFB 2NVGA 4NBDD 1WQLA 2HMKA 5KLVE 4NB8D 2XRXA 1WW9A 1VCKA 4U3FE 2IBZE 4NBGA 2XR8A 2GBXA 2JZAA 3L75E 3FOUA 1NDOA 4HKVA 3CXHE 2BMQA 4HM1A 4P1CH 2QJKC 4NBGD 4NBED 3GCEA 3VCAA 3VMGA 2YFLA 4NBHA 3L73E 2E4PA 4H44D 3CWBE 3L72E 2I7FA 4HJLA 4AAYB 1Q90C 3VMGD 2DE7A 4NBAA 2GBWA 4NBHD 4NB9A 4HM0A 3TGUE 4NBFA 1VF5D 3GL0A 1L0NE 4NBAD 2NUKA 3VMIA 4NB9D 4AIVA 4HM6A 5BOKA 4NB8A 5HL4A 2DE5A 2E75D 3L70E 4PV1D 1UUVA 1VM9A 4PD4E 3EQQA 3VMID 4NBCA 2DE6A 2ZYLA 3H1KE 2FYUE 3GL2A 2DE5D 3GZXA 3GOBA 1SQVE 3H1LE 4NBCD 1RFSA 4NBEA 2DE6D 1Z01A 1ULIA 1Z03A 1NTME 1Z02A 2Q3WA 3DQYA 4QUPA 4QUQA 2JO6A 4HM3A 3EN1A 1SQPE 4HM2A 1PP9E 2E76D 1EZVE 2YFJA 2HMJA 2NWFA 2BCCE 1NYKA 1ULJA 1L0LE 1BCCE 4P1BH 5KLIC 3H1HE 3L74E 4QURA 1G8KB 2NUMA 3GCFA 2CKFA 2B1XA 2HMLA 1KB9E 1NTKE 2QJYC 1BE3E 3GTSA 1RIEA 3AZCA 1NTZE 2XSOA 1G8JB 2HMNA 3GKQA 4NBBA 4QDDA 1P84E 2NVFA 4HM7A 3GB4A 2D2CD 1FQTA 2HMMA 4NBBD 3BCCE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JM1 A;  1PPJ E;  4HM8 A;  1O7G A;  1SQX E;  2HMO A;  2E74 D;  2YVJ B;  2BMR A;  1ZRT E;  4HM5 A;  1O7W A;  2XSH A;  2B24 A;  3L71 E;  1SQQ E;  2QJP C;  2NVE A;  1KYO E;  3VCP A;  1UUW A;  3N0Q A;  4H0L D;  3H1J E;  2E4Q A;  4EMJ B;  5AEU A;  1SJG A;  1EG9 A;  2YIU C;  3CX5 E;  5AEW A;  2QPZ A;  3VMH A;  4QDC A;  1O7P A;  2YFI A;  3GZY A;  4H13 D;  5CXM A;  3VMH D;  2BMO A;  1SQB E;  1O7H A;  3H1I E;  2A06 E;  5KKZ C;  3D89 A;  4QDF A;  2DE7 D;  3C0D A;  4HM4 A;  4OGQ D;  4NBD A;  1O7N A;  1NU1 E;  2FYN C;  2ZT9 D;  3GTE A;  4NBF D;  3GKE A;  1O7M A;  4QCK A;  4QDF B;  2NVG A;  4NBD D;  1WQL A;  2HMK A;  5KLV E;  4NB8 D;  2XRX A;  1WW9 A;  1VCK A;  4U3F E;  2IBZ E;  4NBG A;  2XR8 A;  2GBX A;  2JZA A;  3L75 E;  3FOU A;  1NDO A;  4HKV A;  3CXH E;  2BMQ A;  4HM1 A;  4P1C H;  2QJK C;  4NBG D;  4NBE D;  3GCE A;  3VCA A;  3VMG A;  2YFL A;  4NBH A;  3L73 E;  2E4P A;  4H44 D;  3CWB E;  3L72 E;  2I7F A;  4HJL A;  4AAY B;  1Q90 C;  3VMG D;  2DE7 A;  4NBA A;  2GBW A;  4NBH D;  4NB9 A;  4HM0 A;  3TGU E;  4NBF A;  1VF5 D;  3GL0 A;  1L0N E;  4NBA D;  2NUK A;  3VMI A;  4NB9 D;  4AIV A;  4HM6 A;  5BOK A;  4NB8 A;  5HL4 A;  2DE5 A;  2E75 D;  3L70 E;  4PV1 D;  1UUV A;  1VM9 A;  4PD4 E;  3EQQ A;  3VMI D;  4NBC A;  2DE6 A;  2ZYL A;  3H1K E;  2FYU E;  3GL2 A;  2DE5 D;  3GZX A;  3GOB A;  1SQV E;  3H1L E;  4NBC D;  1RFS A;  4NBE A;  2DE6 D;  1Z01 A;  1ULI A;  1Z03 A;  1NTM E;  1Z02 A;  2Q3W A;  3DQY A;  4QUP A;  4QUQ A;  2JO6 A;  4HM3 A;  3EN1 A;  1SQP E;  4HM2 A;  1PP9 E;  2E76 D;  1EZV E;  2YFJ A;  2HMJ A;  2NWF A;  2BCC E;  1NYK A;  1ULJ A;  1L0L E;  1BCC E;  4P1B H;  5KLI C;  3H1H E;  3L74 E;  4QUR A;  1G8K B;  2NUM A;  3GCF A;  2CKF A;  2B1X A;  2HML A;  1KB9 E;  1NTK E;  2QJY C;  1BE3 E;  3GTS A;  1RIE A;  3AZC A;  1NTZ E;  2XSO A;  1G8J B;  2HMN A;  3GKQ A;  4NBB A;  4QDD A;  1P84 E;  2NVF A;  4HM7 A;  3GB4 A;  2D2C D;  1FQT A;  2HMM A;  4NBB D;  3BCC E; 
#chains in the Genus database with same CATH topology
 1JM1 A;  1PPJ E;  4HM8 A;  1O7G A;  1SQX E;  2HMO A;  2E74 D;  2YVJ B;  2BMR A;  1ZRT E;  4HM5 A;  1O7W A;  2XSH A;  2B24 A;  3L71 E;  1SQQ E;  2QJP C;  2NVE A;  1KYO E;  3VCP A;  1UUW A;  3N0Q A;  4H0L D;  3H1J E;  2E4Q A;  4EMJ B;  5AEU A;  1SJG A;  1EG9 A;  2YIU C;  3CX5 E;  5AEW A;  2QPZ A;  3VMH A;  4QDC A;  1O7P A;  2YFI A;  3GZY A;  4H13 D;  5CXM A;  3VMH D;  2BMO A;  1SQB E;  1O7H A;  3H1I E;  2A06 E;  5KKZ C;  3D89 A;  4QDF A;  2DE7 D;  3C0D A;  4HM4 A;  4OGQ D;  4NBD A;  1O7N A;  1NU1 E;  2FYN C;  2ZT9 D;  3GTE A;  4NBF D;  3GKE A;  1O7M A;  4QCK A;  4QDF B;  2NVG A;  4NBD D;  1WQL A;  2HMK A;  5KLV E;  4NB8 D;  2XRX A;  1WW9 A;  1VCK A;  4U3F E;  2IBZ E;  4NBG A;  2XR8 A;  2GBX A;  2JZA A;  3L75 E;  3FOU A;  1NDO A;  4HKV A;  3CXH E;  2BMQ A;  4HM1 A;  4P1C H;  2QJK C;  4NBG D;  4NBE D;  3GCE A;  3VCA A;  3VMG A;  2YFL A;  4NBH A;  3L73 E;  2E4P A;  4H44 D;  3CWB E;  3L72 E;  2I7F A;  4HJL A;  4AAY B;  1Q90 C;  3VMG D;  2DE7 A;  4NBA A;  2GBW A;  4NBH D;  4NB9 A;  4HM0 A;  3TGU E;  4NBF A;  1VF5 D;  3GL0 A;  1L0N E;  4NBA D;  2NUK A;  3VMI A;  4NB9 D;  4AIV A;  4HM6 A;  5BOK A;  4NB8 A;  5HL4 A;  2DE5 A;  2E75 D;  3L70 E;  4PV1 D;  1UUV A;  1VM9 A;  4PD4 E;  3EQQ A;  3VMI D;  4NBC A;  2DE6 A;  2ZYL A;  3H1K E;  2FYU E;  3GL2 A;  2DE5 D;  3GZX A;  3GOB A;  1SQV E;  3H1L E;  4NBC D;  1RFS A;  4NBE A;  2DE6 D;  1Z01 A;  1ULI A;  1Z03 A;  1NTM E;  1Z02 A;  2Q3W A;  3DQY A;  4QUP A;  4QUQ A;  2JO6 A;  4HM3 A;  3EN1 A;  1SQP E;  4HM2 A;  1PP9 E;  2E76 D;  1EZV E;  2YFJ A;  2HMJ A;  2NWF A;  2BCC E;  1NYK A;  1ULJ A;  1L0L E;  1BCC E;  4P1B H;  5KLI C;  3H1H E;  3L74 E;  4QUR A;  1G8K B;  2NUM A;  3GCF A;  2CKF A;  2B1X A;  2HML A;  1KB9 E;  1NTK E;  2QJY C;  1BE3 E;  3GTS A;  1RIE A;  3AZC A;  1NTZ E;  2XSO A;  1G8J B;  2HMN A;  3GKQ A;  4NBB A;  4QDD A;  1P84 E;  2NVF A;  4HM7 A;  3GB4 A;  2D2C D;  1FQT A;  2HMM A;  4NBB D;  3BCC E; 
#chains in the Genus database with same CATH homology
 1JM1 A;  1PPJ E;  4HM8 A;  1O7G A;  1SQX E;  2HMO A;  2E74 D;  2YVJ B;  2BMR A;  1ZRT E;  4HM5 A;  1O7W A;  2XSH A;  2B24 A;  3L71 E;  1SQQ E;  2QJP C;  2NVE A;  1KYO E;  3VCP A;  1UUW A;  3N0Q A;  4H0L D;  3H1J E;  2E4Q A;  4EMJ B;  5AEU A;  1SJG A;  1EG9 A;  2YIU C;  3CX5 E;  5AEW A;  2QPZ A;  3VMH A;  4QDC A;  1O7P A;  2YFI A;  3GZY A;  4H13 D;  5CXM A;  3VMH D;  2BMO A;  1SQB E;  1O7H A;  3H1I E;  2A06 E;  5KKZ C;  3D89 A;  4QDF A;  2DE7 D;  3C0D A;  4HM4 A;  4OGQ D;  4NBD A;  1O7N A;  1NU1 E;  2FYN C;  2ZT9 D;  3GTE A;  4NBF D;  3GKE A;  1O7M A;  4QCK A;  4QDF B;  2NVG A;  4NBD D;  1WQL A;  2HMK A;  5KLV E;  4NB8 D;  2XRX A;  1WW9 A;  1VCK A;  4U3F E;  2IBZ E;  4NBG A;  2XR8 A;  2GBX A;  2JZA A;  3L75 E;  3FOU A;  1NDO A;  4HKV A;  3CXH E;  2BMQ A;  4HM1 A;  4P1C H;  2QJK C;  4NBG D;  4NBE D;  3GCE A;  3VCA A;  3VMG A;  2YFL A;  4NBH A;  3L73 E;  2E4P A;  4H44 D;  3CWB E;  3L72 E;  2I7F A;  4HJL A;  4AAY B;  1Q90 C;  3VMG D;  2DE7 A;  4NBA A;  2GBW A;  4NBH D;  4NB9 A;  4HM0 A;  3TGU E;  4NBF A;  1VF5 D;  3GL0 A;  1L0N E;  4NBA D;  2NUK A;  3VMI A;  4NB9 D;  4AIV A;  4HM6 A;  5BOK A;  4NB8 A;  5HL4 A;  2DE5 A;  2E75 D;  3L70 E;  4PV1 D;  1UUV A;  1VM9 A;  4PD4 E;  3EQQ A;  3VMI D;  4NBC A;  2DE6 A;  2ZYL A;  3H1K E;  2FYU E;  3GL2 A;  2DE5 D;  3GZX A;  3GOB A;  1SQV E;  3H1L E;  4NBC D;  1RFS A;  4NBE A;  2DE6 D;  1Z01 A;  1ULI A;  1Z03 A;  1NTM E;  1Z02 A;  2Q3W A;  3DQY A;  4QUP A;  4QUQ A;  2JO6 A;  4HM3 A;  3EN1 A;  1SQP E;  4HM2 A;  1PP9 E;  2E76 D;  1EZV E;  2YFJ A;  2HMJ A;  2NWF A;  2BCC E;  1NYK A;  1ULJ A;  1L0L E;  1BCC E;  4P1B H;  5KLI C;  3H1H E;  3L74 E;  4QUR A;  1G8K B;  2NUM A;  3GCF A;  2CKF A;  2B1X A;  2HML A;  1KB9 E;  1NTK E;  2QJY C;  1BE3 E;  3GTS A;  1RIE A;  3AZC A;  1NTZ E;  2XSO A;  1G8J B;  2HMN A;  3GKQ A;  4NBB A;  4QDD A;  1P84 E;  2NVF A;  4HM7 A;  3GB4 A;  2D2C D;  1FQT A;  2HMM A;  4NBB D;  3BCC E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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