2BMQA

The crystal structure of nitrobenzene dioxygenase in complex with nitrobenzene
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
molecule keywords OXYGENASE-ALPHA NBDO
total genus 156
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmqA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmqA01
2ZYLA 4QUQA 2E74D 4QDCA 1JM1A 2CKFA 2YFIA 4NBAA 1NTZE 1L0NE 2E76D 1RFSA 4NBEA 2BMOA 1NTME 5CXMA 2E75D 4QCKA 3L74E 4P1CH 2DE6A 1G8KB 1P84E 4H0LD 3L75E 2BCCE 4QUPA 2NUMA 2E4PA 2HMJA 3GL0A 2A06E 3VMID 4AIVA 4NBDA 4HM8A 4HM4A 3D89A 4NBAD 3N0QA 2YFJA 2YIUC 3H1KE 2NWFA 4NBHA 3C0DA 2HMOA 2XSOA 1UUWA 2Q3WA 1L0LE 2NVGA 4NB8D 2B1XA 4HM2A 2NVFA 2HMLA 1VF5D 1PP9E 2DE7D 2GBXA 3TGUE 2HMMA 2DE5D 2HMKA 2BMQA 3GZYA 1O7MA 1G8JB 2QJKC 1NDOA 3EN1A 4QURA 2DE5A 1Z01A 1O7NA 4HM1A 1ZRTE 1Q90C 2ZT9D 3EQQA 5KLIC 1WW9A 4PV1D 4QDDA 4NB8A 1BCCE 1SQPE 1EZVE 4NBCD 1SQQE 1VCKA 4H44D 4QDFA 4HM3A 4NBBA 3GL2A 2DE6D 1ULIA 4NBHD 3BCCE 3H1IE 1KYOE 3VCPA 2NUKA 2QJPC 1ULJA 2IBZE 3FOUA 1O7PA 3VMGA 3CXHE 1FQTA 3GCFA 2D2CD 3GKEA 2E4QA 4P1BH 3VMIA 3DQYA 2I7FA 3GTSA 5AEUA 1Z02A 3VMGD 1VM9A 3VMHA 3VMHD 1EG9A 4OGQD 5KLVE 1Z03A 2XR8A 4HJLA 3H1HE 4HM7A 4HM6A 2FYNC 4HKVA 4NBED 3GKQA 1NTKE 2QPZA 2YFLA 3L72E 2GBWA 1O7GA 4NB9D 3H1JE 2JZAA 2XRXA 3GB4A 4AAYB 5HL4A 1SQXE 3GZXA 3CWBE 5AEWA 4HM0A 2NVEA 2QJYC 4NBBD 1WQLA 2B24A 4NBCA 4NBGD 3GOBA 1NU1E 2XSHA 2YVJB 1BE3E 4HM5A 3AZCA 1O7HA 3L71E 4U3FE 4EMJB 1O7WA 4NBFD 3L70E 1KB9E 3CX5E 2JO6A 1SQBE 4QDFB 4NBFA 4H13D 1SQVE 5BOKA 2HMNA 2FYUE 5KKZC 3GTEA 2DE7A 1SJGA 4NB9A 1RIEA 3VCAA 3H1LE 4NBDD 3GCEA 2BMRA 3L73E 4NBGA 1PPJE 1UUVA 4PD4E 1NYKA
chains in the Genus database with same CATH superfamily
2ZYLA 4QUQA 2E74D 4QDCA 1JM1A 2CKFA 2YFIA 4NBAA 1NTZE 1L0NE 2E76D 1RFSA 4NBEA 2BMOA 1NTME 5CXMA 2E75D 4QCKA 3L74E 4P1CH 2DE6A 1G8KB 1P84E 4H0LD 3L75E 2BCCE 4QUPA 2NUMA 2E4PA 2HMJA 3GL0A 2A06E 3VMID 4AIVA 4NBDA 4HM8A 4HM4A 3D89A 4NBAD 3N0QA 2YFJA 2YIUC 3H1KE 2NWFA 4NBHA 3C0DA 2HMOA 2XSOA 1UUWA 2Q3WA 1L0LE 2NVGA 4NB8D 2B1XA 4HM2A 2NVFA 2HMLA 1VF5D 1PP9E 2DE7D 2GBXA 3TGUE 2HMMA 2DE5D 2HMKA 2BMQA 3GZYA 1O7MA 1G8JB 2QJKC 1NDOA 3EN1A 4QURA 2DE5A 1Z01A 1O7NA 4HM1A 1ZRTE 1Q90C 2ZT9D 3EQQA 5KLIC 1WW9A 4PV1D 4QDDA 4NB8A 1BCCE 1SQPE 1EZVE 4NBCD 1SQQE 1VCKA 4H44D 4QDFA 4HM3A 4NBBA 3GL2A 2DE6D 1ULIA 4NBHD 3BCCE 3H1IE 1KYOE 3VCPA 2NUKA 2QJPC 1ULJA 2IBZE 3FOUA 1O7PA 3VMGA 3CXHE 1FQTA 3GCFA 2D2CD 3GKEA 2E4QA 4P1BH 3VMIA 3DQYA 2I7FA 3GTSA 5AEUA 1Z02A 3VMGD 1VM9A 3VMHA 3VMHD 1EG9A 4OGQD 5KLVE 1Z03A 2XR8A 4HJLA 3H1HE 4HM7A 4HM6A 2FYNC 4HKVA 4NBED 3GKQA 1NTKE 2QPZA 2YFLA 3L72E 2GBWA 1O7GA 4NB9D 3H1JE 2JZAA 2XRXA 3GB4A 4AAYB 5HL4A 1SQXE 3GZXA 3CWBE 5AEWA 4HM0A 2NVEA 2QJYC 4NBBD 1WQLA 2B24A 4NBCA 4NBGD 3GOBA 1NU1E 2XSHA 2YVJB 1BE3E 4HM5A 3AZCA 1O7HA 3L71E 4U3FE 4EMJB 1O7WA 4NBFD 3L70E 1KB9E 3CX5E 2JO6A 1SQBE 4QDFB 4NBFA 4H13D 1SQVE 5BOKA 2HMNA 2FYUE 5KKZC 3GTEA 2DE7A 1SJGA 4NB9A 1RIEA 3VCAA 3H1LE 4NBDD 3GCEA 2BMRA 3L73E 4NBGA 1PPJE 1UUVA 4PD4E 1NYKA
chains in the Genus database with same CATH topology
2ZYLA 4QUQA 2E74D 4QDCA 1JM1A 2CKFA 2YFIA 4NBAA 1NTZE 1L0NE 2E76D 1RFSA 4NBEA 2BMOA 1NTME 5CXMA 2E75D 4QCKA 3L74E 4P1CH 2DE6A 1G8KB 1P84E 4H0LD 3L75E 2BCCE 4QUPA 2NUMA 2E4PA 2HMJA 3GL0A 2A06E 3VMID 4AIVA 4NBDA 4HM8A 4HM4A 3D89A 4NBAD 3N0QA 2YFJA 2YIUC 3H1KE 2NWFA 4NBHA 3C0DA 2HMOA 2XSOA 1UUWA 2Q3WA 1L0LE 2NVGA 4NB8D 2B1XA 4HM2A 2NVFA 2HMLA 1VF5D 1PP9E 2DE7D 2GBXA 3TGUE 2HMMA 2DE5D 2HMKA 2BMQA 3GZYA 1O7MA 1G8JB 2QJKC 1NDOA 3EN1A 4QURA 2DE5A 1Z01A 1O7NA 4HM1A 1ZRTE 1Q90C 2ZT9D 3EQQA 5KLIC 1WW9A 4PV1D 4QDDA 4NB8A 1BCCE 1SQPE 1EZVE 4NBCD 1SQQE 1VCKA 4H44D 4QDFA 4HM3A 4NBBA 3GL2A 2DE6D 1ULIA 4NBHD 3BCCE 3H1IE 1KYOE 3VCPA 2NUKA 2QJPC 1ULJA 2IBZE 3FOUA 1O7PA 3VMGA 3CXHE 1FQTA 3GCFA 2D2CD 3GKEA 2E4QA 4P1BH 3VMIA 3DQYA 2I7FA 3GTSA 5AEUA 1Z02A 3VMGD 1VM9A 3VMHA 3VMHD 1EG9A 4OGQD 5KLVE 1Z03A 2XR8A 4HJLA 3H1HE 4HM7A 4HM6A 2FYNC 4HKVA 4NBED 3GKQA 1NTKE 2QPZA 2YFLA 3L72E 2GBWA 1O7GA 4NB9D 3H1JE 2JZAA 2XRXA 3GB4A 4AAYB 5HL4A 1SQXE 3GZXA 3CWBE 5AEWA 4HM0A 2NVEA 2QJYC 4NBBD 1WQLA 2B24A 4NBCA 4NBGD 3GOBA 1NU1E 2XSHA 2YVJB 1BE3E 4HM5A 3AZCA 1O7HA 3L71E 4U3FE 4EMJB 1O7WA 4NBFD 3L70E 1KB9E 3CX5E 2JO6A 1SQBE 4QDFB 4NBFA 4H13D 1SQVE 5BOKA 2HMNA 2FYUE 5KKZC 3GTEA 2DE7A 1SJGA 4NB9A 1RIEA 3VCAA 3H1LE 4NBDD 3GCEA 2BMRA 3L73E 4NBGA 1PPJE 1UUVA 4PD4E 1NYKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZYL A;  4QUQ A;  2E74 D;  4QDC A;  1JM1 A;  2CKF A;  2YFI A;  4NBA A;  1NTZ E;  1L0N E;  2E76 D;  1RFS A;  4NBE A;  2BMO A;  1NTM E;  5CXM A;  2E75 D;  4QCK A;  3L74 E;  4P1C H;  2DE6 A;  1G8K B;  1P84 E;  4H0L D;  3L75 E;  2BCC E;  4QUP A;  2NUM A;  2E4P A;  2HMJ A;  3GL0 A;  2A06 E;  3VMI D;  4AIV A;  4NBD A;  4HM8 A;  4HM4 A;  3D89 A;  4NBA D;  3N0Q A;  2YFJ A;  2YIU C;  3H1K E;  2NWF A;  4NBH A;  3C0D A;  2HMO A;  2XSO A;  1UUW A;  2Q3W A;  1L0L E;  2NVG A;  4NB8 D;  2B1X A;  4HM2 A;  2NVF A;  2HML A;  1VF5 D;  1PP9 E;  2DE7 D;  2GBX A;  3TGU E;  2HMM A;  2DE5 D;  2HMK A;  2BMQ A;  3GZY A;  1O7M A;  1G8J B;  2QJK C;  1NDO A;  3EN1 A;  4QUR A;  2DE5 A;  1Z01 A;  1O7N A;  4HM1 A;  1ZRT E;  1Q90 C;  2ZT9 D;  3EQQ A;  5KLI C;  1WW9 A;  4PV1 D;  4QDD A;  4NB8 A;  1BCC E;  1SQP E;  1EZV E;  4NBC D;  1SQQ E;  1VCK A;  4H44 D;  4QDF A;  4HM3 A;  4NBB A;  3GL2 A;  2DE6 D;  1ULI A;  4NBH D;  3BCC E;  3H1I E;  1KYO E;  3VCP A;  2NUK A;  2QJP C;  1ULJ A;  2IBZ E;  3FOU A;  1O7P A;  3VMG A;  3CXH E;  1FQT A;  3GCF A;  2D2C D;  3GKE A;  2E4Q A;  4P1B H;  3VMI A;  3DQY A;  2I7F A;  3GTS A;  5AEU A;  1Z02 A;  3VMG D;  1VM9 A;  3VMH A;  3VMH D;  1EG9 A;  4OGQ D;  5KLV E;  1Z03 A;  2XR8 A;  4HJL A;  3H1H E;  4HM7 A;  4HM6 A;  2FYN C;  4HKV A;  4NBE D;  3GKQ A;  1NTK E;  2QPZ A;  2YFL A;  3L72 E;  2GBW A;  1O7G A;  4NB9 D;  3H1J E;  2JZA A;  2XRX A;  3GB4 A;  4AAY B;  5HL4 A;  1SQX E;  3GZX A;  3CWB E;  5AEW A;  4HM0 A;  2NVE A;  2QJY C;  4NBB D;  1WQL A;  2B24 A;  4NBC A;  4NBG D;  3GOB A;  1NU1 E;  2XSH A;  2YVJ B;  1BE3 E;  4HM5 A;  3AZC A;  1O7H A;  3L71 E;  4U3F E;  4EMJ B;  1O7W A;  4NBF D;  3L70 E;  1KB9 E;  3CX5 E;  2JO6 A;  1SQB E;  4QDF B;  4NBF A;  4H13 D;  1SQV E;  5BOK A;  2HMN A;  2FYU E;  5KKZ C;  3GTE A;  2DE7 A;  1SJG A;  4NB9 A;  1RIE A;  3VCA A;  3H1L E;  4NBD D;  3GCE A;  2BMR A;  3L73 E;  4NBG A;  1PPJ E;  1UUV A;  4PD4 E;  1NYK A; 
#chains in the Genus database with same CATH topology
 2ZYL A;  4QUQ A;  2E74 D;  4QDC A;  1JM1 A;  2CKF A;  2YFI A;  4NBA A;  1NTZ E;  1L0N E;  2E76 D;  1RFS A;  4NBE A;  2BMO A;  1NTM E;  5CXM A;  2E75 D;  4QCK A;  3L74 E;  4P1C H;  2DE6 A;  1G8K B;  1P84 E;  4H0L D;  3L75 E;  2BCC E;  4QUP A;  2NUM A;  2E4P A;  2HMJ A;  3GL0 A;  2A06 E;  3VMI D;  4AIV A;  4NBD A;  4HM8 A;  4HM4 A;  3D89 A;  4NBA D;  3N0Q A;  2YFJ A;  2YIU C;  3H1K E;  2NWF A;  4NBH A;  3C0D A;  2HMO A;  2XSO A;  1UUW A;  2Q3W A;  1L0L E;  2NVG A;  4NB8 D;  2B1X A;  4HM2 A;  2NVF A;  2HML A;  1VF5 D;  1PP9 E;  2DE7 D;  2GBX A;  3TGU E;  2HMM A;  2DE5 D;  2HMK A;  2BMQ A;  3GZY A;  1O7M A;  1G8J B;  2QJK C;  1NDO A;  3EN1 A;  4QUR A;  2DE5 A;  1Z01 A;  1O7N A;  4HM1 A;  1ZRT E;  1Q90 C;  2ZT9 D;  3EQQ A;  5KLI C;  1WW9 A;  4PV1 D;  4QDD A;  4NB8 A;  1BCC E;  1SQP E;  1EZV E;  4NBC D;  1SQQ E;  1VCK A;  4H44 D;  4QDF A;  4HM3 A;  4NBB A;  3GL2 A;  2DE6 D;  1ULI A;  4NBH D;  3BCC E;  3H1I E;  1KYO E;  3VCP A;  2NUK A;  2QJP C;  1ULJ A;  2IBZ E;  3FOU A;  1O7P A;  3VMG A;  3CXH E;  1FQT A;  3GCF A;  2D2C D;  3GKE A;  2E4Q A;  4P1B H;  3VMI A;  3DQY A;  2I7F A;  3GTS A;  5AEU A;  1Z02 A;  3VMG D;  1VM9 A;  3VMH A;  3VMH D;  1EG9 A;  4OGQ D;  5KLV E;  1Z03 A;  2XR8 A;  4HJL A;  3H1H E;  4HM7 A;  4HM6 A;  2FYN C;  4HKV A;  4NBE D;  3GKQ A;  1NTK E;  2QPZ A;  2YFL A;  3L72 E;  2GBW A;  1O7G A;  4NB9 D;  3H1J E;  2JZA A;  2XRX A;  3GB4 A;  4AAY B;  5HL4 A;  1SQX E;  3GZX A;  3CWB E;  5AEW A;  4HM0 A;  2NVE A;  2QJY C;  4NBB D;  1WQL A;  2B24 A;  4NBC A;  4NBG D;  3GOB A;  1NU1 E;  2XSH A;  2YVJ B;  1BE3 E;  4HM5 A;  3AZC A;  1O7H A;  3L71 E;  4U3F E;  4EMJ B;  1O7W A;  4NBF D;  3L70 E;  1KB9 E;  3CX5 E;  2JO6 A;  1SQB E;  4QDF B;  4NBF A;  4H13 D;  1SQV E;  5BOK A;  2HMN A;  2FYU E;  5KKZ C;  3GTE A;  2DE7 A;  1SJG A;  4NB9 A;  1RIE A;  3VCA A;  3H1L E;  4NBD D;  3GCE A;  2BMR A;  3L73 E;  4NBG A;  1PPJ E;  1UUV A;  4PD4 E;  1NYK A; 
#chains in the Genus database with same CATH homology
 2ZYL A;  4QUQ A;  2E74 D;  4QDC A;  1JM1 A;  2CKF A;  2YFI A;  4NBA A;  1NTZ E;  1L0N E;  2E76 D;  1RFS A;  4NBE A;  2BMO A;  1NTM E;  5CXM A;  2E75 D;  4QCK A;  3L74 E;  4P1C H;  2DE6 A;  1G8K B;  1P84 E;  4H0L D;  3L75 E;  2BCC E;  4QUP A;  2NUM A;  2E4P A;  2HMJ A;  3GL0 A;  2A06 E;  3VMI D;  4AIV A;  4NBD A;  4HM8 A;  4HM4 A;  3D89 A;  4NBA D;  3N0Q A;  2YFJ A;  2YIU C;  3H1K E;  2NWF A;  4NBH A;  3C0D A;  2HMO A;  2XSO A;  1UUW A;  2Q3W A;  1L0L E;  2NVG A;  4NB8 D;  2B1X A;  4HM2 A;  2NVF A;  2HML A;  1VF5 D;  1PP9 E;  2DE7 D;  2GBX A;  3TGU E;  2HMM A;  2DE5 D;  2HMK A;  2BMQ A;  3GZY A;  1O7M A;  1G8J B;  2QJK C;  1NDO A;  3EN1 A;  4QUR A;  2DE5 A;  1Z01 A;  1O7N A;  4HM1 A;  1ZRT E;  1Q90 C;  2ZT9 D;  3EQQ A;  5KLI C;  1WW9 A;  4PV1 D;  4QDD A;  4NB8 A;  1BCC E;  1SQP E;  1EZV E;  4NBC D;  1SQQ E;  1VCK A;  4H44 D;  4QDF A;  4HM3 A;  4NBB A;  3GL2 A;  2DE6 D;  1ULI A;  4NBH D;  3BCC E;  3H1I E;  1KYO E;  3VCP A;  2NUK A;  2QJP C;  1ULJ A;  2IBZ E;  3FOU A;  1O7P A;  3VMG A;  3CXH E;  1FQT A;  3GCF A;  2D2C D;  3GKE A;  2E4Q A;  4P1B H;  3VMI A;  3DQY A;  2I7F A;  3GTS A;  5AEU A;  1Z02 A;  3VMG D;  1VM9 A;  3VMH A;  3VMH D;  1EG9 A;  4OGQ D;  5KLV E;  1Z03 A;  2XR8 A;  4HJL A;  3H1H E;  4HM7 A;  4HM6 A;  2FYN C;  4HKV A;  4NBE D;  3GKQ A;  1NTK E;  2QPZ A;  2YFL A;  3L72 E;  2GBW A;  1O7G A;  4NB9 D;  3H1J E;  2JZA A;  2XRX A;  3GB4 A;  4AAY B;  5HL4 A;  1SQX E;  3GZX A;  3CWB E;  5AEW A;  4HM0 A;  2NVE A;  2QJY C;  4NBB D;  1WQL A;  2B24 A;  4NBC A;  4NBG D;  3GOB A;  1NU1 E;  2XSH A;  2YVJ B;  1BE3 E;  4HM5 A;  3AZC A;  1O7H A;  3L71 E;  4U3F E;  4EMJ B;  1O7W A;  4NBF D;  3L70 E;  1KB9 E;  3CX5 E;  2JO6 A;  1SQB E;  4QDF B;  4NBF A;  4H13 D;  1SQV E;  5BOK A;  2HMN A;  2FYU E;  5KKZ C;  3GTE A;  2DE7 A;  1SJG A;  4NB9 A;  1RIE A;  3VCA A;  3H1L E;  4NBD D;  3GCE A;  2BMR A;  3L73 E;  4NBG A;  1PPJ E;  1UUV A;  4PD4 E;  1NYK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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