2BMQA

The crystal structure of nitrobenzene dioxygenase in complex with nitrobenzene
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords OXYGENASE-ALPHA NBDO
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
total genus 156
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmqA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmqA01
2YVJB 2NWFA 4NB9D 4QDDA 4QURA 1BCCE 4NB9A 4HM0A 3GZYA 3FOUA 3L70E 2NVGA 4PV1D 2CKFA 3L72E 2Q3WA 4HM5A 2XSHA 2BMQA 3BCCE 5KKZC 1NDOA 4NBDD 3GB4A 2QJYC 3EN1A 3H1IE 5BOKA 2E76D 4NBDA 2I7FA 4QCKA 2E74D 2B24A 3GKQA 2JZAA 3L74E 2XSOA 1O7MA 2BCCE 1L0NE 4NBAD 4NBAA 4OGQD 1Q90C 2FYUE 2HMLA 2HMMA 3GOBA 4HKVA 4HM7A 4PD4E 3EQQA 2XR8A 4H44D 2FYNC 3VMHD 1FQTA 3H1LE 3VCPA 3VMHA 3D89A 1WW9A 1O7PA 2ZYLA 3CWBE 4NBCD 4EMJB 3GCEA 4NBCA 1G8JB 1O7GA 2YFJA 3C0DA 1SQBE 2HMKA 2HMNA 4H0LD 4QUQA 1RFSA 1BE3E 1G8KB 2HMJA 3GZXA 2ZT9D 4HM1A 2YIUC 4NBGD 4NBHD 4HM8A 4NBHA 4NBGA 3L71E 3GCFA 1VCKA 2E75D 4HM3A 4QDFA 3H1JE 4HM4A 2XRXA 4NB8D 5AEUA 4NB8A 5KLIC 4HM6A 2NVEA 1EG9A 2DE5D 2JO6A 2DE6D 2DE5A 2DE6A 2IBZE 3H1HE 1RIEA 2D2CD 2BMRA 2E4QA 3VCAA 4QDFB 2NVFA 5HL4A 1SQXE 1Z03A 4H13D 2GBXA 4P1BH 1Z02A 2HMOA 2DE7A 1O7HA 4HM2A 1L0LE 3CX5E 2B1XA 1SQPE 1O7WA 4NBFD 1ULIA 1UUVA 4NBFA 1VM9A 1SQVE 3H1KE 1NTKE 2NUMA 1P84E 5AEWA 1KB9E 3L73E 4AAYB 1NYKA 1JM1A 3TGUE 1EZVE 1KYOE 2A06E 3VMID 3CXHE 3VMIA 4QDCA 4NBED 1UUWA 1O7NA 1PP9E 4NBEA 2NUKA 3GTSA 3AZCA 3GTEA 1NTZE 3GL2A 4AIVA 2YFLA 2BMOA 4U3FE 1NU1E 2YFIA 2QPZA 4NBBD 4NBBA 2DE7D 1SJGA 2QJPC 1ULJA 1NTME 2QJKC 1VF5D 1PPJE 3L75E 3VMGD 3VMGA 2GBWA 3N0QA 2E4PA 4P1CH 1ZRTE 1Z01A 4HJLA 5KLVE 5CXMA 3GKEA 4QUPA 1SQQE 1WQLA 3DQYA 3GL0A
chains in the Genus database with same CATH superfamily
2YVJB 2NWFA 4NB9D 4QDDA 4QURA 1BCCE 4NB9A 4HM0A 3GZYA 3FOUA 3L70E 2NVGA 4PV1D 2CKFA 3L72E 2Q3WA 4HM5A 2XSHA 2BMQA 3BCCE 5KKZC 1NDOA 4NBDD 3GB4A 2QJYC 3EN1A 3H1IE 5BOKA 2E76D 4NBDA 2I7FA 4QCKA 2E74D 2B24A 3GKQA 2JZAA 3L74E 2XSOA 1O7MA 2BCCE 1L0NE 4NBAD 4NBAA 4OGQD 1Q90C 2FYUE 2HMLA 2HMMA 3GOBA 4HKVA 4HM7A 4PD4E 3EQQA 2XR8A 4H44D 2FYNC 3VMHD 1FQTA 3H1LE 3VCPA 3VMHA 3D89A 1WW9A 1O7PA 2ZYLA 3CWBE 4NBCD 4EMJB 3GCEA 4NBCA 1G8JB 1O7GA 2YFJA 3C0DA 1SQBE 2HMKA 2HMNA 4H0LD 4QUQA 1RFSA 1BE3E 1G8KB 2HMJA 3GZXA 2ZT9D 4HM1A 2YIUC 4NBGD 4NBHD 4HM8A 4NBHA 4NBGA 3L71E 3GCFA 1VCKA 2E75D 4HM3A 4QDFA 3H1JE 4HM4A 2XRXA 4NB8D 5AEUA 4NB8A 5KLIC 4HM6A 2NVEA 1EG9A 2DE5D 2JO6A 2DE6D 2DE5A 2DE6A 2IBZE 3H1HE 1RIEA 2D2CD 2BMRA 2E4QA 3VCAA 4QDFB 2NVFA 5HL4A 1SQXE 1Z03A 4H13D 2GBXA 4P1BH 1Z02A 2HMOA 2DE7A 1O7HA 4HM2A 1L0LE 3CX5E 2B1XA 1SQPE 1O7WA 4NBFD 1ULIA 1UUVA 4NBFA 1VM9A 1SQVE 3H1KE 1NTKE 2NUMA 1P84E 5AEWA 1KB9E 3L73E 4AAYB 1NYKA 1JM1A 3TGUE 1EZVE 1KYOE 2A06E 3VMID 3CXHE 3VMIA 4QDCA 4NBED 1UUWA 1O7NA 1PP9E 4NBEA 2NUKA 3GTSA 3AZCA 3GTEA 1NTZE 3GL2A 4AIVA 2YFLA 2BMOA 4U3FE 1NU1E 2YFIA 2QPZA 4NBBD 4NBBA 2DE7D 1SJGA 2QJPC 1ULJA 1NTME 2QJKC 1VF5D 1PPJE 3L75E 3VMGD 3VMGA 2GBWA 3N0QA 2E4PA 4P1CH 1ZRTE 1Z01A 4HJLA 5KLVE 5CXMA 3GKEA 4QUPA 1SQQE 1WQLA 3DQYA 3GL0A
chains in the Genus database with same CATH topology
2YVJB 2NWFA 4NB9D 4QDDA 4QURA 1BCCE 4NB9A 4HM0A 3GZYA 3FOUA 3L70E 2NVGA 4PV1D 2CKFA 3L72E 2Q3WA 4HM5A 2XSHA 2BMQA 3BCCE 5KKZC 1NDOA 4NBDD 3GB4A 2QJYC 3EN1A 3H1IE 5BOKA 2E76D 4NBDA 2I7FA 4QCKA 2E74D 2B24A 3GKQA 2JZAA 3L74E 2XSOA 1O7MA 2BCCE 1L0NE 4NBAD 4NBAA 4OGQD 1Q90C 2FYUE 2HMLA 2HMMA 3GOBA 4HKVA 4HM7A 4PD4E 3EQQA 2XR8A 4H44D 2FYNC 3VMHD 1FQTA 3H1LE 3VCPA 3VMHA 3D89A 1WW9A 1O7PA 2ZYLA 3CWBE 4NBCD 4EMJB 3GCEA 4NBCA 1G8JB 1O7GA 2YFJA 3C0DA 1SQBE 2HMKA 2HMNA 4H0LD 4QUQA 1RFSA 1BE3E 1G8KB 2HMJA 3GZXA 2ZT9D 4HM1A 2YIUC 4NBGD 4NBHD 4HM8A 4NBHA 4NBGA 3L71E 3GCFA 1VCKA 2E75D 4HM3A 4QDFA 3H1JE 4HM4A 2XRXA 4NB8D 5AEUA 4NB8A 5KLIC 4HM6A 2NVEA 1EG9A 2DE5D 2JO6A 2DE6D 2DE5A 2DE6A 2IBZE 3H1HE 1RIEA 2D2CD 2BMRA 2E4QA 3VCAA 4QDFB 2NVFA 5HL4A 1SQXE 1Z03A 4H13D 2GBXA 4P1BH 1Z02A 2HMOA 2DE7A 1O7HA 4HM2A 1L0LE 3CX5E 2B1XA 1SQPE 1O7WA 4NBFD 1ULIA 1UUVA 4NBFA 1VM9A 1SQVE 3H1KE 1NTKE 2NUMA 1P84E 5AEWA 1KB9E 3L73E 4AAYB 1NYKA 1JM1A 3TGUE 1EZVE 1KYOE 2A06E 3VMID 3CXHE 3VMIA 4QDCA 4NBED 1UUWA 1O7NA 1PP9E 4NBEA 2NUKA 3GTSA 3AZCA 3GTEA 1NTZE 3GL2A 4AIVA 2YFLA 2BMOA 4U3FE 1NU1E 2YFIA 2QPZA 4NBBD 4NBBA 2DE7D 1SJGA 2QJPC 1ULJA 1NTME 2QJKC 1VF5D 1PPJE 3L75E 3VMGD 3VMGA 2GBWA 3N0QA 2E4PA 4P1CH 1ZRTE 1Z01A 4HJLA 5KLVE 5CXMA 3GKEA 4QUPA 1SQQE 1WQLA 3DQYA 3GL0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YVJ B;  2NWF A;  4NB9 D;  4QDD A;  4QUR A;  1BCC E;  4NB9 A;  4HM0 A;  3GZY A;  3FOU A;  3L70 E;  2NVG A;  4PV1 D;  2CKF A;  3L72 E;  2Q3W A;  4HM5 A;  2XSH A;  2BMQ A;  3BCC E;  5KKZ C;  1NDO A;  4NBD D;  3GB4 A;  2QJY C;  3EN1 A;  3H1I E;  5BOK A;  2E76 D;  4NBD A;  2I7F A;  4QCK A;  2E74 D;  2B24 A;  3GKQ A;  2JZA A;  3L74 E;  2XSO A;  1O7M A;  2BCC E;  1L0N E;  4NBA D;  4NBA A;  4OGQ D;  1Q90 C;  2FYU E;  2HML A;  2HMM A;  3GOB A;  4HKV A;  4HM7 A;  4PD4 E;  3EQQ A;  2XR8 A;  4H44 D;  2FYN C;  3VMH D;  1FQT A;  3H1L E;  3VCP A;  3VMH A;  3D89 A;  1WW9 A;  1O7P A;  2ZYL A;  3CWB E;  4NBC D;  4EMJ B;  3GCE A;  4NBC A;  1G8J B;  1O7G A;  2YFJ A;  3C0D A;  1SQB E;  2HMK A;  2HMN A;  4H0L D;  4QUQ A;  1RFS A;  1BE3 E;  1G8K B;  2HMJ A;  3GZX A;  2ZT9 D;  4HM1 A;  2YIU C;  4NBG D;  4NBH D;  4HM8 A;  4NBH A;  4NBG A;  3L71 E;  3GCF A;  1VCK A;  2E75 D;  4HM3 A;  4QDF A;  3H1J E;  4HM4 A;  2XRX A;  4NB8 D;  5AEU A;  4NB8 A;  5KLI C;  4HM6 A;  2NVE A;  1EG9 A;  2DE5 D;  2JO6 A;  2DE6 D;  2DE5 A;  2DE6 A;  2IBZ E;  3H1H E;  1RIE A;  2D2C D;  2BMR A;  2E4Q A;  3VCA A;  4QDF B;  2NVF A;  5HL4 A;  1SQX E;  1Z03 A;  4H13 D;  2GBX A;  4P1B H;  1Z02 A;  2HMO A;  2DE7 A;  1O7H A;  4HM2 A;  1L0L E;  3CX5 E;  2B1X A;  1SQP E;  1O7W A;  4NBF D;  1ULI A;  1UUV A;  4NBF A;  1VM9 A;  1SQV E;  3H1K E;  1NTK E;  2NUM A;  1P84 E;  5AEW A;  1KB9 E;  3L73 E;  4AAY B;  1NYK A;  1JM1 A;  3TGU E;  1EZV E;  1KYO E;  2A06 E;  3VMI D;  3CXH E;  3VMI A;  4QDC A;  4NBE D;  1UUW A;  1O7N A;  1PP9 E;  4NBE A;  2NUK A;  3GTS A;  3AZC A;  3GTE A;  1NTZ E;  3GL2 A;  4AIV A;  2YFL A;  2BMO A;  4U3F E;  1NU1 E;  2YFI A;  2QPZ A;  4NBB D;  4NBB A;  2DE7 D;  1SJG A;  2QJP C;  1ULJ A;  1NTM E;  2QJK C;  1VF5 D;  1PPJ E;  3L75 E;  3VMG D;  3VMG A;  2GBW A;  3N0Q A;  2E4P A;  4P1C H;  1ZRT E;  1Z01 A;  4HJL A;  5KLV E;  5CXM A;  3GKE A;  4QUP A;  1SQQ E;  1WQL A;  3DQY A;  3GL0 A; 
#chains in the Genus database with same CATH topology
 2YVJ B;  2NWF A;  4NB9 D;  4QDD A;  4QUR A;  1BCC E;  4NB9 A;  4HM0 A;  3GZY A;  3FOU A;  3L70 E;  2NVG A;  4PV1 D;  2CKF A;  3L72 E;  2Q3W A;  4HM5 A;  2XSH A;  2BMQ A;  3BCC E;  5KKZ C;  1NDO A;  4NBD D;  3GB4 A;  2QJY C;  3EN1 A;  3H1I E;  5BOK A;  2E76 D;  4NBD A;  2I7F A;  4QCK A;  2E74 D;  2B24 A;  3GKQ A;  2JZA A;  3L74 E;  2XSO A;  1O7M A;  2BCC E;  1L0N E;  4NBA D;  4NBA A;  4OGQ D;  1Q90 C;  2FYU E;  2HML A;  2HMM A;  3GOB A;  4HKV A;  4HM7 A;  4PD4 E;  3EQQ A;  2XR8 A;  4H44 D;  2FYN C;  3VMH D;  1FQT A;  3H1L E;  3VCP A;  3VMH A;  3D89 A;  1WW9 A;  1O7P A;  2ZYL A;  3CWB E;  4NBC D;  4EMJ B;  3GCE A;  4NBC A;  1G8J B;  1O7G A;  2YFJ A;  3C0D A;  1SQB E;  2HMK A;  2HMN A;  4H0L D;  4QUQ A;  1RFS A;  1BE3 E;  1G8K B;  2HMJ A;  3GZX A;  2ZT9 D;  4HM1 A;  2YIU C;  4NBG D;  4NBH D;  4HM8 A;  4NBH A;  4NBG A;  3L71 E;  3GCF A;  1VCK A;  2E75 D;  4HM3 A;  4QDF A;  3H1J E;  4HM4 A;  2XRX A;  4NB8 D;  5AEU A;  4NB8 A;  5KLI C;  4HM6 A;  2NVE A;  1EG9 A;  2DE5 D;  2JO6 A;  2DE6 D;  2DE5 A;  2DE6 A;  2IBZ E;  3H1H E;  1RIE A;  2D2C D;  2BMR A;  2E4Q A;  3VCA A;  4QDF B;  2NVF A;  5HL4 A;  1SQX E;  1Z03 A;  4H13 D;  2GBX A;  4P1B H;  1Z02 A;  2HMO A;  2DE7 A;  1O7H A;  4HM2 A;  1L0L E;  3CX5 E;  2B1X A;  1SQP E;  1O7W A;  4NBF D;  1ULI A;  1UUV A;  4NBF A;  1VM9 A;  1SQV E;  3H1K E;  1NTK E;  2NUM A;  1P84 E;  5AEW A;  1KB9 E;  3L73 E;  4AAY B;  1NYK A;  1JM1 A;  3TGU E;  1EZV E;  1KYO E;  2A06 E;  3VMI D;  3CXH E;  3VMI A;  4QDC A;  4NBE D;  1UUW A;  1O7N A;  1PP9 E;  4NBE A;  2NUK A;  3GTS A;  3AZC A;  3GTE A;  1NTZ E;  3GL2 A;  4AIV A;  2YFL A;  2BMO A;  4U3F E;  1NU1 E;  2YFI A;  2QPZ A;  4NBB D;  4NBB A;  2DE7 D;  1SJG A;  2QJP C;  1ULJ A;  1NTM E;  2QJK C;  1VF5 D;  1PPJ E;  3L75 E;  3VMG D;  3VMG A;  2GBW A;  3N0Q A;  2E4P A;  4P1C H;  1ZRT E;  1Z01 A;  4HJL A;  5KLV E;  5CXM A;  3GKE A;  4QUP A;  1SQQ E;  1WQL A;  3DQY A;  3GL0 A; 
#chains in the Genus database with same CATH homology
 2YVJ B;  2NWF A;  4NB9 D;  4QDD A;  4QUR A;  1BCC E;  4NB9 A;  4HM0 A;  3GZY A;  3FOU A;  3L70 E;  2NVG A;  4PV1 D;  2CKF A;  3L72 E;  2Q3W A;  4HM5 A;  2XSH A;  2BMQ A;  3BCC E;  5KKZ C;  1NDO A;  4NBD D;  3GB4 A;  2QJY C;  3EN1 A;  3H1I E;  5BOK A;  2E76 D;  4NBD A;  2I7F A;  4QCK A;  2E74 D;  2B24 A;  3GKQ A;  2JZA A;  3L74 E;  2XSO A;  1O7M A;  2BCC E;  1L0N E;  4NBA D;  4NBA A;  4OGQ D;  1Q90 C;  2FYU E;  2HML A;  2HMM A;  3GOB A;  4HKV A;  4HM7 A;  4PD4 E;  3EQQ A;  2XR8 A;  4H44 D;  2FYN C;  3VMH D;  1FQT A;  3H1L E;  3VCP A;  3VMH A;  3D89 A;  1WW9 A;  1O7P A;  2ZYL A;  3CWB E;  4NBC D;  4EMJ B;  3GCE A;  4NBC A;  1G8J B;  1O7G A;  2YFJ A;  3C0D A;  1SQB E;  2HMK A;  2HMN A;  4H0L D;  4QUQ A;  1RFS A;  1BE3 E;  1G8K B;  2HMJ A;  3GZX A;  2ZT9 D;  4HM1 A;  2YIU C;  4NBG D;  4NBH D;  4HM8 A;  4NBH A;  4NBG A;  3L71 E;  3GCF A;  1VCK A;  2E75 D;  4HM3 A;  4QDF A;  3H1J E;  4HM4 A;  2XRX A;  4NB8 D;  5AEU A;  4NB8 A;  5KLI C;  4HM6 A;  2NVE A;  1EG9 A;  2DE5 D;  2JO6 A;  2DE6 D;  2DE5 A;  2DE6 A;  2IBZ E;  3H1H E;  1RIE A;  2D2C D;  2BMR A;  2E4Q A;  3VCA A;  4QDF B;  2NVF A;  5HL4 A;  1SQX E;  1Z03 A;  4H13 D;  2GBX A;  4P1B H;  1Z02 A;  2HMO A;  2DE7 A;  1O7H A;  4HM2 A;  1L0L E;  3CX5 E;  2B1X A;  1SQP E;  1O7W A;  4NBF D;  1ULI A;  1UUV A;  4NBF A;  1VM9 A;  1SQV E;  3H1K E;  1NTK E;  2NUM A;  1P84 E;  5AEW A;  1KB9 E;  3L73 E;  4AAY B;  1NYK A;  1JM1 A;  3TGU E;  1EZV E;  1KYO E;  2A06 E;  3VMI D;  3CXH E;  3VMI A;  4QDC A;  4NBE D;  1UUW A;  1O7N A;  1PP9 E;  4NBE A;  2NUK A;  3GTS A;  3AZC A;  3GTE A;  1NTZ E;  3GL2 A;  4AIV A;  2YFL A;  2BMO A;  4U3F E;  1NU1 E;  2YFI A;  2QPZ A;  4NBB D;  4NBB A;  2DE7 D;  1SJG A;  2QJP C;  1ULJ A;  1NTM E;  2QJK C;  1VF5 D;  1PPJ E;  3L75 E;  3VMG D;  3VMG A;  2GBW A;  3N0Q A;  2E4P A;  4P1C H;  1ZRT E;  1Z01 A;  4HJL A;  5KLV E;  5CXM A;  3GKE A;  4QUP A;  1SQQ E;  1WQL A;  3DQY A;  3GL0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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