1O7MA

Naphthalene 1,2-dioxygenase, binary complex with dioxygen
Total Genus 165
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
total genus 165
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7mA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7mA01
1PP9E 4HM7A 1O7PA 5HL4A 2Q3WA 2HMMA 2JZAA 1SQBE 2IBZE 4H13D 4QDCA 2YFIA 3CWBE 1O7HA 2DE6D 3GTEA 1ULIA 4NBFA 1NYKA 1RIEA 3H1JE 1EZVE 2B24A 3GL0A 4P1CH 3L74E 4NBCD 1SJGA 2FYNC 1WW9A 2ZT9D 4AIVA 1EG9A 2DE6A 2NUKA 3GCFA 2DE5D 4NBGD 4NBHD 2CKFA 2B1XA 2A06E 3GOBA 4HKVA 1Z03A 4NBCA 2XR8A 2YFLA 1UUVA 4NB8A 4NBHA 4QDDA 4HM4A 4U3FE 1UUWA 1G8JB 1Z01A 3VMIA 3EN1A 2QJYC 4NBAD 3GCEA 1VF5D 2BMOA 2NVFA 3GKEA 2HMNA 3L70E 3GZYA 4HM0A 4HM2A 4NBAA 2FYUE 3D89A 1O7MA 4QURA 2BMRA 4NB9D 2D2CD 1NTZE 3L71E 3GZXA 2NUMA 4HM8A 4NB9A 3FOUA 2QJKC 3GTSA 4NBED 4HM5A 2HMJA 1KB9E 1VM9A 2BMQA 3DQYA 1KYOE 2DE5A 3C0DA 3N0QA 4NBGA 4QCKA 2E76D 4AAYB 1SQVE 1BE3E 3BCCE 5BOKA 2E4PA 2NWFA 1SQPE 4H0LD 3H1LE 2HMLA 1O7WA 2QPZA 4QUQA 1SQQE 2HMKA 4OGQD 2GBWA 1FQTA 2YFJA 3L72E 1ULJA 4PD4E 1P84E 1WQLA 2ZYLA 3GKQA 1G8KB 2I7FA 1Q90C 5KLIC 1L0NE 3L75E 2YVJB 1NDOA 4NBDD 2XRXA 5KLVE 2XSOA 4HM1A 2NVGA 3VMHD 4NBEA 2XSHA 4HM3A 2JO6A 2NVEA 5AEWA 4QDFB 4NBDA 3EQQA 1NTME 5AEUA 4NBFD 3VMHA 4PV1D 3GB4A 1SQXE 3CXHE 4HJLA 1O7GA 1L0LE 3H1IE 4EMJB 4HM6A 2HMOA 3H1HE 1NTKE 2GBXA 3VCPA 2DE7D 2YIUC 3VMGD 4QUPA 4NBBD 1RFSA 1VCKA 2QJPC 2E74D 5KKZC 4NB8D 2DE7A 3VMGA 1Z02A 5CXMA 3VMID 4H44D 4NBBA 1ZRTE 2BCCE 2E75D 3TGUE 4QDFA 1O7NA 3L73E 4P1BH 3H1KE 1BCCE 1PPJE 3VCAA 3AZCA 3GL2A 2E4QA 1NU1E 3CX5E 1JM1A
chains in the Genus database with same CATH superfamily
1PP9E 4HM7A 1O7PA 5HL4A 2Q3WA 2HMMA 2JZAA 1SQBE 2IBZE 4H13D 4QDCA 2YFIA 3CWBE 1O7HA 2DE6D 3GTEA 1ULIA 4NBFA 1NYKA 1RIEA 3H1JE 1EZVE 2B24A 3GL0A 4P1CH 3L74E 4NBCD 1SJGA 2FYNC 1WW9A 2ZT9D 4AIVA 1EG9A 2DE6A 2NUKA 3GCFA 2DE5D 4NBGD 4NBHD 2CKFA 2B1XA 2A06E 3GOBA 4HKVA 1Z03A 4NBCA 2XR8A 2YFLA 1UUVA 4NB8A 4NBHA 4QDDA 4HM4A 4U3FE 1UUWA 1G8JB 1Z01A 3VMIA 3EN1A 2QJYC 4NBAD 3GCEA 1VF5D 2BMOA 2NVFA 3GKEA 2HMNA 3L70E 3GZYA 4HM0A 4HM2A 4NBAA 2FYUE 3D89A 1O7MA 4QURA 2BMRA 4NB9D 2D2CD 1NTZE 3L71E 3GZXA 2NUMA 4HM8A 4NB9A 3FOUA 2QJKC 3GTSA 4NBED 4HM5A 2HMJA 1KB9E 1VM9A 2BMQA 3DQYA 1KYOE 2DE5A 3C0DA 3N0QA 4NBGA 4QCKA 2E76D 4AAYB 1SQVE 1BE3E 3BCCE 5BOKA 2E4PA 2NWFA 1SQPE 4H0LD 3H1LE 2HMLA 1O7WA 2QPZA 4QUQA 1SQQE 2HMKA 4OGQD 2GBWA 1FQTA 2YFJA 3L72E 1ULJA 4PD4E 1P84E 1WQLA 2ZYLA 3GKQA 1G8KB 2I7FA 1Q90C 5KLIC 1L0NE 3L75E 2YVJB 1NDOA 4NBDD 2XRXA 5KLVE 2XSOA 4HM1A 2NVGA 3VMHD 4NBEA 2XSHA 4HM3A 2JO6A 2NVEA 5AEWA 4QDFB 4NBDA 3EQQA 1NTME 5AEUA 4NBFD 3VMHA 4PV1D 3GB4A 1SQXE 3CXHE 4HJLA 1O7GA 1L0LE 3H1IE 4EMJB 4HM6A 2HMOA 3H1HE 1NTKE 2GBXA 3VCPA 2DE7D 2YIUC 3VMGD 4QUPA 4NBBD 1RFSA 1VCKA 2QJPC 2E74D 5KKZC 4NB8D 2DE7A 3VMGA 1Z02A 5CXMA 3VMID 4H44D 4NBBA 1ZRTE 2BCCE 2E75D 3TGUE 4QDFA 1O7NA 3L73E 4P1BH 3H1KE 1BCCE 1PPJE 3VCAA 3AZCA 3GL2A 2E4QA 1NU1E 3CX5E 1JM1A
chains in the Genus database with same CATH topology
1PP9E 4HM7A 1O7PA 5HL4A 2Q3WA 2HMMA 2JZAA 1SQBE 2IBZE 4H13D 4QDCA 2YFIA 3CWBE 1O7HA 2DE6D 3GTEA 1ULIA 4NBFA 1NYKA 1RIEA 3H1JE 1EZVE 2B24A 3GL0A 4P1CH 3L74E 4NBCD 1SJGA 2FYNC 1WW9A 2ZT9D 4AIVA 1EG9A 2DE6A 2NUKA 3GCFA 2DE5D 4NBGD 4NBHD 2CKFA 2B1XA 2A06E 3GOBA 4HKVA 1Z03A 4NBCA 2XR8A 2YFLA 1UUVA 4NB8A 4NBHA 4QDDA 4HM4A 4U3FE 1UUWA 1G8JB 1Z01A 3VMIA 3EN1A 2QJYC 4NBAD 3GCEA 1VF5D 2BMOA 2NVFA 3GKEA 2HMNA 3L70E 3GZYA 4HM0A 4HM2A 4NBAA 2FYUE 3D89A 1O7MA 4QURA 2BMRA 4NB9D 2D2CD 1NTZE 3L71E 3GZXA 2NUMA 4HM8A 4NB9A 3FOUA 2QJKC 3GTSA 4NBED 4HM5A 2HMJA 1KB9E 1VM9A 2BMQA 3DQYA 1KYOE 2DE5A 3C0DA 3N0QA 4NBGA 4QCKA 2E76D 4AAYB 1SQVE 1BE3E 3BCCE 5BOKA 2E4PA 2NWFA 1SQPE 4H0LD 3H1LE 2HMLA 1O7WA 2QPZA 4QUQA 1SQQE 2HMKA 4OGQD 2GBWA 1FQTA 2YFJA 3L72E 1ULJA 4PD4E 1P84E 1WQLA 2ZYLA 3GKQA 1G8KB 2I7FA 1Q90C 5KLIC 1L0NE 3L75E 2YVJB 1NDOA 4NBDD 2XRXA 5KLVE 2XSOA 4HM1A 2NVGA 3VMHD 4NBEA 2XSHA 4HM3A 2JO6A 2NVEA 5AEWA 4QDFB 4NBDA 3EQQA 1NTME 5AEUA 4NBFD 3VMHA 4PV1D 3GB4A 1SQXE 3CXHE 4HJLA 1O7GA 1L0LE 3H1IE 4EMJB 4HM6A 2HMOA 3H1HE 1NTKE 2GBXA 3VCPA 2DE7D 2YIUC 3VMGD 4QUPA 4NBBD 1RFSA 1VCKA 2QJPC 2E74D 5KKZC 4NB8D 2DE7A 3VMGA 1Z02A 5CXMA 3VMID 4H44D 4NBBA 1ZRTE 2BCCE 2E75D 3TGUE 4QDFA 1O7NA 3L73E 4P1BH 3H1KE 1BCCE 1PPJE 3VCAA 3AZCA 3GL2A 2E4QA 1NU1E 3CX5E 1JM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PP9 E;  4HM7 A;  1O7P A;  5HL4 A;  2Q3W A;  2HMM A;  2JZA A;  1SQB E;  2IBZ E;  4H13 D;  4QDC A;  2YFI A;  3CWB E;  1O7H A;  2DE6 D;  3GTE A;  1ULI A;  4NBF A;  1NYK A;  1RIE A;  3H1J E;  1EZV E;  2B24 A;  3GL0 A;  4P1C H;  3L74 E;  4NBC D;  1SJG A;  2FYN C;  1WW9 A;  2ZT9 D;  4AIV A;  1EG9 A;  2DE6 A;  2NUK A;  3GCF A;  2DE5 D;  4NBG D;  4NBH D;  2CKF A;  2B1X A;  2A06 E;  3GOB A;  4HKV A;  1Z03 A;  4NBC A;  2XR8 A;  2YFL A;  1UUV A;  4NB8 A;  4NBH A;  4QDD A;  4HM4 A;  4U3F E;  1UUW A;  1G8J B;  1Z01 A;  3VMI A;  3EN1 A;  2QJY C;  4NBA D;  3GCE A;  1VF5 D;  2BMO A;  2NVF A;  3GKE A;  2HMN A;  3L70 E;  3GZY A;  4HM0 A;  4HM2 A;  4NBA A;  2FYU E;  3D89 A;  1O7M A;  4QUR A;  2BMR A;  4NB9 D;  2D2C D;  1NTZ E;  3L71 E;  3GZX A;  2NUM A;  4HM8 A;  4NB9 A;  3FOU A;  2QJK C;  3GTS A;  4NBE D;  4HM5 A;  2HMJ A;  1KB9 E;  1VM9 A;  2BMQ A;  3DQY A;  1KYO E;  2DE5 A;  3C0D A;  3N0Q A;  4NBG A;  4QCK A;  2E76 D;  4AAY B;  1SQV E;  1BE3 E;  3BCC E;  5BOK A;  2E4P A;  2NWF A;  1SQP E;  4H0L D;  3H1L E;  2HML A;  1O7W A;  2QPZ A;  4QUQ A;  1SQQ E;  2HMK A;  4OGQ D;  2GBW A;  1FQT A;  2YFJ A;  3L72 E;  1ULJ A;  4PD4 E;  1P84 E;  1WQL A;  2ZYL A;  3GKQ A;  1G8K B;  2I7F A;  1Q90 C;  5KLI C;  1L0N E;  3L75 E;  2YVJ B;  1NDO A;  4NBD D;  2XRX A;  5KLV E;  2XSO A;  4HM1 A;  2NVG A;  3VMH D;  4NBE A;  2XSH A;  4HM3 A;  2JO6 A;  2NVE A;  5AEW A;  4QDF B;  4NBD A;  3EQQ A;  1NTM E;  5AEU A;  4NBF D;  3VMH A;  4PV1 D;  3GB4 A;  1SQX E;  3CXH E;  4HJL A;  1O7G A;  1L0L E;  3H1I E;  4EMJ B;  4HM6 A;  2HMO A;  3H1H E;  1NTK E;  2GBX A;  3VCP A;  2DE7 D;  2YIU C;  3VMG D;  4QUP A;  4NBB D;  1RFS A;  1VCK A;  2QJP C;  2E74 D;  5KKZ C;  4NB8 D;  2DE7 A;  3VMG A;  1Z02 A;  5CXM A;  3VMI D;  4H44 D;  4NBB A;  1ZRT E;  2BCC E;  2E75 D;  3TGU E;  4QDF A;  1O7N A;  3L73 E;  4P1B H;  3H1K E;  1BCC E;  1PPJ E;  3VCA A;  3AZC A;  3GL2 A;  2E4Q A;  1NU1 E;  3CX5 E;  1JM1 A; 
#chains in the Genus database with same CATH topology
 1PP9 E;  4HM7 A;  1O7P A;  5HL4 A;  2Q3W A;  2HMM A;  2JZA A;  1SQB E;  2IBZ E;  4H13 D;  4QDC A;  2YFI A;  3CWB E;  1O7H A;  2DE6 D;  3GTE A;  1ULI A;  4NBF A;  1NYK A;  1RIE A;  3H1J E;  1EZV E;  2B24 A;  3GL0 A;  4P1C H;  3L74 E;  4NBC D;  1SJG A;  2FYN C;  1WW9 A;  2ZT9 D;  4AIV A;  1EG9 A;  2DE6 A;  2NUK A;  3GCF A;  2DE5 D;  4NBG D;  4NBH D;  2CKF A;  2B1X A;  2A06 E;  3GOB A;  4HKV A;  1Z03 A;  4NBC A;  2XR8 A;  2YFL A;  1UUV A;  4NB8 A;  4NBH A;  4QDD A;  4HM4 A;  4U3F E;  1UUW A;  1G8J B;  1Z01 A;  3VMI A;  3EN1 A;  2QJY C;  4NBA D;  3GCE A;  1VF5 D;  2BMO A;  2NVF A;  3GKE A;  2HMN A;  3L70 E;  3GZY A;  4HM0 A;  4HM2 A;  4NBA A;  2FYU E;  3D89 A;  1O7M A;  4QUR A;  2BMR A;  4NB9 D;  2D2C D;  1NTZ E;  3L71 E;  3GZX A;  2NUM A;  4HM8 A;  4NB9 A;  3FOU A;  2QJK C;  3GTS A;  4NBE D;  4HM5 A;  2HMJ A;  1KB9 E;  1VM9 A;  2BMQ A;  3DQY A;  1KYO E;  2DE5 A;  3C0D A;  3N0Q A;  4NBG A;  4QCK A;  2E76 D;  4AAY B;  1SQV E;  1BE3 E;  3BCC E;  5BOK A;  2E4P A;  2NWF A;  1SQP E;  4H0L D;  3H1L E;  2HML A;  1O7W A;  2QPZ A;  4QUQ A;  1SQQ E;  2HMK A;  4OGQ D;  2GBW A;  1FQT A;  2YFJ A;  3L72 E;  1ULJ A;  4PD4 E;  1P84 E;  1WQL A;  2ZYL A;  3GKQ A;  1G8K B;  2I7F A;  1Q90 C;  5KLI C;  1L0N E;  3L75 E;  2YVJ B;  1NDO A;  4NBD D;  2XRX A;  5KLV E;  2XSO A;  4HM1 A;  2NVG A;  3VMH D;  4NBE A;  2XSH A;  4HM3 A;  2JO6 A;  2NVE A;  5AEW A;  4QDF B;  4NBD A;  3EQQ A;  1NTM E;  5AEU A;  4NBF D;  3VMH A;  4PV1 D;  3GB4 A;  1SQX E;  3CXH E;  4HJL A;  1O7G A;  1L0L E;  3H1I E;  4EMJ B;  4HM6 A;  2HMO A;  3H1H E;  1NTK E;  2GBX A;  3VCP A;  2DE7 D;  2YIU C;  3VMG D;  4QUP A;  4NBB D;  1RFS A;  1VCK A;  2QJP C;  2E74 D;  5KKZ C;  4NB8 D;  2DE7 A;  3VMG A;  1Z02 A;  5CXM A;  3VMI D;  4H44 D;  4NBB A;  1ZRT E;  2BCC E;  2E75 D;  3TGU E;  4QDF A;  1O7N A;  3L73 E;  4P1B H;  3H1K E;  1BCC E;  1PPJ E;  3VCA A;  3AZC A;  3GL2 A;  2E4Q A;  1NU1 E;  3CX5 E;  1JM1 A; 
#chains in the Genus database with same CATH homology
 1PP9 E;  4HM7 A;  1O7P A;  5HL4 A;  2Q3W A;  2HMM A;  2JZA A;  1SQB E;  2IBZ E;  4H13 D;  4QDC A;  2YFI A;  3CWB E;  1O7H A;  2DE6 D;  3GTE A;  1ULI A;  4NBF A;  1NYK A;  1RIE A;  3H1J E;  1EZV E;  2B24 A;  3GL0 A;  4P1C H;  3L74 E;  4NBC D;  1SJG A;  2FYN C;  1WW9 A;  2ZT9 D;  4AIV A;  1EG9 A;  2DE6 A;  2NUK A;  3GCF A;  2DE5 D;  4NBG D;  4NBH D;  2CKF A;  2B1X A;  2A06 E;  3GOB A;  4HKV A;  1Z03 A;  4NBC A;  2XR8 A;  2YFL A;  1UUV A;  4NB8 A;  4NBH A;  4QDD A;  4HM4 A;  4U3F E;  1UUW A;  1G8J B;  1Z01 A;  3VMI A;  3EN1 A;  2QJY C;  4NBA D;  3GCE A;  1VF5 D;  2BMO A;  2NVF A;  3GKE A;  2HMN A;  3L70 E;  3GZY A;  4HM0 A;  4HM2 A;  4NBA A;  2FYU E;  3D89 A;  1O7M A;  4QUR A;  2BMR A;  4NB9 D;  2D2C D;  1NTZ E;  3L71 E;  3GZX A;  2NUM A;  4HM8 A;  4NB9 A;  3FOU A;  2QJK C;  3GTS A;  4NBE D;  4HM5 A;  2HMJ A;  1KB9 E;  1VM9 A;  2BMQ A;  3DQY A;  1KYO E;  2DE5 A;  3C0D A;  3N0Q A;  4NBG A;  4QCK A;  2E76 D;  4AAY B;  1SQV E;  1BE3 E;  3BCC E;  5BOK A;  2E4P A;  2NWF A;  1SQP E;  4H0L D;  3H1L E;  2HML A;  1O7W A;  2QPZ A;  4QUQ A;  1SQQ E;  2HMK A;  4OGQ D;  2GBW A;  1FQT A;  2YFJ A;  3L72 E;  1ULJ A;  4PD4 E;  1P84 E;  1WQL A;  2ZYL A;  3GKQ A;  1G8K B;  2I7F A;  1Q90 C;  5KLI C;  1L0N E;  3L75 E;  2YVJ B;  1NDO A;  4NBD D;  2XRX A;  5KLV E;  2XSO A;  4HM1 A;  2NVG A;  3VMH D;  4NBE A;  2XSH A;  4HM3 A;  2JO6 A;  2NVE A;  5AEW A;  4QDF B;  4NBD A;  3EQQ A;  1NTM E;  5AEU A;  4NBF D;  3VMH A;  4PV1 D;  3GB4 A;  1SQX E;  3CXH E;  4HJL A;  1O7G A;  1L0L E;  3H1I E;  4EMJ B;  4HM6 A;  2HMO A;  3H1H E;  1NTK E;  2GBX A;  3VCP A;  2DE7 D;  2YIU C;  3VMG D;  4QUP A;  4NBB D;  1RFS A;  1VCK A;  2QJP C;  2E74 D;  5KKZ C;  4NB8 D;  2DE7 A;  3VMG A;  1Z02 A;  5CXM A;  3VMI D;  4H44 D;  4NBB A;  1ZRT E;  2BCC E;  2E75 D;  3TGU E;  4QDF A;  1O7N A;  3L73 E;  4P1B H;  3H1K E;  1BCC E;  1PPJ E;  3VCA A;  3AZC A;  3GL2 A;  2E4Q A;  1NU1 E;  3CX5 E;  1JM1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...