2E4PA

Crystal structure of bpha3 (oxidized form)
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
108
structure length
108
Chain Sequence
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPPPCEPLKVYPIRIEGRDVLVDFSRAALHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Pseudomonas sp.
publication title Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
pubmed doi rcsb
molecule keywords Biphenyl dioxygenase ferredoxin subunit
total genus 19
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2e4pA00
2D2CD 2I7FA 4PD4E 2B1XA 4QDFB 5KLIC 4NBDD 1SQPE 4HM2A 3GKEA 2E75D 1JM1A 3FOUA 2DE5D 2NUKA 2NVGA 1NTME 4P1CH 3GTEA 2QJYC 1BE3E 1EG9A 4OGQD 1O7MA 4HM8A 4QUPA 2YVJB 4EMJB 1BCCE 4HM1A 1SQQE 2GBWA 2GBXA 1FQTA 4H44D 4QDFA 2XSHA 4HM6A 3VMHD 1Q90C 4AIVA 1PP9E 2E4PA 4HM5A 2NVFA 4NBED 3H1LE 1SQBE 3VMGD 1L0LE 1O7HA 1G8KB 4NBBD 2DE7D 5AEWA 3EQQA 3GL0A 1WQLA 1UUWA 4NBFD 1NTZE 3BCCE 3VCPA 2NWFA 3H1JE 3GB4A 1O7WA 4HKVA 4HM7A 3L75E 4PV1D 2HMLA 1O7PA 2BMQA 1ZRTE 2E74D 3H1IE 3L73E 4QDDA 1ULJA 2ZT9D 3VCAA 2YFJA 4H0LD 2HMMA 2HMJA 3H1KE 1EZVE 1NU1E 2HMNA 3L74E 2XR8A 3AZCA 4QUQA 1ULIA 3CX5E 2Q3WA 3CWBE 2FYNC 2NVEA 2NUMA 2YIUC 3H1HE 4H13D 4HM4A 2E4QA 4NBHD 2JZAA 2QJKC 2YFIA 1L0NE 1KYOE 1NDOA 3N0QA 3L71E 4AAYB 2XRXA 5BOKA 2HMOA 1G8JB 1UUVA 1NYKA 1NTKE 3L72E 1SJGA 1RFSA 3EN1A 3C0DA 4NBGD 4P1BH 1SQVE 2BMOA 2YFLA 4QURA 2BMRA 3GOBA 3GZXA 2HMKA 3CXHE 3GTSA 5KKZC 1VCKA 4HM0A 3D89A 2QJPC 1SQXE 3GZYA 2BCCE 2ZYLA 2XSOA 1KB9E 2A06E 2JO6A 3TGUE 4QCKA 4NB9D 5HL4A 4HJLA 5AEUA 1PPJE 1RIEA 2B24A 5CXMA 1P84E 2IBZE 3GL2A 4HM3A 4NB8D 3GCEA 4U3FE 4NBCD 1O7NA 3DQYA 2QPZA 4NBAD 5KLVE 1VF5D 3VMID 2E76D 1VM9A 2FYUE 3L70E 1O7GA 4QDCA 2DE6D 2CKFA
chains in the Genus database with same CATH superfamily
2D2CD 2I7FA 4PD4E 2B1XA 4QDFB 5KLIC 4NBDD 1SQPE 4HM2A 3GKEA 2E75D 1JM1A 3FOUA 2DE5D 2NUKA 2NVGA 1NTME 4P1CH 3GTEA 2QJYC 1BE3E 1EG9A 4OGQD 1O7MA 4HM8A 4QUPA 2YVJB 4EMJB 1BCCE 4HM1A 1SQQE 2GBWA 2GBXA 1FQTA 4H44D 4QDFA 2XSHA 4HM6A 3VMHD 1Q90C 4AIVA 1PP9E 2E4PA 4HM5A 2NVFA 4NBED 3H1LE 1SQBE 3VMGD 1L0LE 1O7HA 1G8KB 4NBBD 2DE7D 5AEWA 3EQQA 3GL0A 1WQLA 1UUWA 4NBFD 1NTZE 3BCCE 3VCPA 2NWFA 3H1JE 3GB4A 1O7WA 4HKVA 4HM7A 3L75E 4PV1D 2HMLA 1O7PA 2BMQA 1ZRTE 2E74D 3H1IE 3L73E 4QDDA 1ULJA 2ZT9D 3VCAA 2YFJA 4H0LD 2HMMA 2HMJA 3H1KE 1EZVE 1NU1E 2HMNA 3L74E 2XR8A 3AZCA 4QUQA 1ULIA 3CX5E 2Q3WA 3CWBE 2FYNC 2NVEA 2NUMA 2YIUC 3H1HE 4H13D 4HM4A 2E4QA 4NBHD 2JZAA 2QJKC 2YFIA 1L0NE 1KYOE 1NDOA 3N0QA 3L71E 4AAYB 2XRXA 5BOKA 2HMOA 1G8JB 1UUVA 1NYKA 1NTKE 3L72E 1SJGA 1RFSA 3EN1A 3C0DA 4NBGD 4P1BH 1SQVE 2BMOA 2YFLA 4QURA 2BMRA 3GOBA 3GZXA 2HMKA 3CXHE 3GTSA 5KKZC 1VCKA 4HM0A 3D89A 2QJPC 1SQXE 3GZYA 2BCCE 2ZYLA 2XSOA 1KB9E 2A06E 2JO6A 3TGUE 4QCKA 4NB9D 5HL4A 4HJLA 5AEUA 1PPJE 1RIEA 2B24A 5CXMA 1P84E 2IBZE 3GL2A 4HM3A 4NB8D 3GCEA 4U3FE 4NBCD 1O7NA 3DQYA 2QPZA 4NBAD 5KLVE 1VF5D 3VMID 2E76D 1VM9A 2FYUE 3L70E 1O7GA 4QDCA 2DE6D 2CKFA
chains in the Genus database with same CATH topology
2D2CD 2I7FA 4PD4E 2B1XA 4QDFB 5KLIC 4NBDD 1SQPE 4HM2A 3GKEA 2E75D 1JM1A 3FOUA 2DE5D 2NUKA 2NVGA 1NTME 4P1CH 3GTEA 2QJYC 1BE3E 1EG9A 4OGQD 1O7MA 4HM8A 4QUPA 2YVJB 4EMJB 1BCCE 4HM1A 1SQQE 2GBWA 2GBXA 1FQTA 4H44D 4QDFA 2XSHA 4HM6A 3VMHD 1Q90C 4AIVA 1PP9E 2E4PA 4HM5A 2NVFA 4NBED 3H1LE 1SQBE 3VMGD 1L0LE 1O7HA 1G8KB 4NBBD 2DE7D 5AEWA 3EQQA 3GL0A 1WQLA 1UUWA 4NBFD 1NTZE 3BCCE 3VCPA 2NWFA 3H1JE 3GB4A 1O7WA 4HKVA 4HM7A 3L75E 4PV1D 2HMLA 1O7PA 2BMQA 1ZRTE 2E74D 3H1IE 3L73E 4QDDA 1ULJA 2ZT9D 3VCAA 2YFJA 4H0LD 2HMMA 2HMJA 3H1KE 1EZVE 1NU1E 2HMNA 3L74E 2XR8A 3AZCA 4QUQA 1ULIA 3CX5E 2Q3WA 3CWBE 2FYNC 2NVEA 2NUMA 2YIUC 3H1HE 4H13D 4HM4A 2E4QA 4NBHD 2JZAA 2QJKC 2YFIA 1L0NE 1KYOE 1NDOA 3N0QA 3L71E 4AAYB 2XRXA 5BOKA 2HMOA 1G8JB 1UUVA 1NYKA 1NTKE 3L72E 1SJGA 1RFSA 3EN1A 3C0DA 4NBGD 4P1BH 1SQVE 2BMOA 2YFLA 4QURA 2BMRA 3GOBA 3GZXA 2HMKA 3CXHE 3GTSA 5KKZC 1VCKA 4HM0A 3D89A 2QJPC 1SQXE 3GZYA 2BCCE 2ZYLA 2XSOA 1KB9E 2A06E 2JO6A 3TGUE 4QCKA 4NB9D 5HL4A 4HJLA 5AEUA 1PPJE 1RIEA 2B24A 5CXMA 1P84E 2IBZE 3GL2A 4HM3A 4NB8D 3GCEA 4U3FE 4NBCD 1O7NA 3DQYA 2QPZA 4NBAD 5KLVE 1VF5D 3VMID 2E76D 1VM9A 2FYUE 3L70E 1O7GA 4QDCA 2DE6D 2CKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D2C D;  2I7F A;  4PD4 E;  2B1X A;  4QDF B;  5KLI C;  4NBD D;  1SQP E;  4HM2 A;  3GKE A;  2E75 D;  1JM1 A;  3FOU A;  2DE5 D;  2NUK A;  2NVG A;  1NTM E;  4P1C H;  3GTE A;  2QJY C;  1BE3 E;  1EG9 A;  4OGQ D;  1O7M A;  4HM8 A;  4QUP A;  2YVJ B;  4EMJ B;  1BCC E;  4HM1 A;  1SQQ E;  2GBW A;  2GBX A;  1FQT A;  4H44 D;  4QDF A;  2XSH A;  4HM6 A;  3VMH D;  1Q90 C;  4AIV A;  1PP9 E;  2E4P A;  4HM5 A;  2NVF A;  4NBE D;  3H1L E;  1SQB E;  3VMG D;  1L0L E;  1O7H A;  1G8K B;  4NBB D;  2DE7 D;  5AEW A;  3EQQ A;  3GL0 A;  1WQL A;  1UUW A;  4NBF D;  1NTZ E;  3BCC E;  3VCP A;  2NWF A;  3H1J E;  3GB4 A;  1O7W A;  4HKV A;  4HM7 A;  3L75 E;  4PV1 D;  2HML A;  1O7P A;  2BMQ A;  1ZRT E;  2E74 D;  3H1I E;  3L73 E;  4QDD A;  1ULJ A;  2ZT9 D;  3VCA A;  2YFJ A;  4H0L D;  2HMM A;  2HMJ A;  3H1K E;  1EZV E;  1NU1 E;  2HMN A;  3L74 E;  2XR8 A;  3AZC A;  4QUQ A;  1ULI A;  3CX5 E;  2Q3W A;  3CWB E;  2FYN C;  2NVE A;  2NUM A;  2YIU C;  3H1H E;  4H13 D;  4HM4 A;  2E4Q A;  4NBH D;  2JZA A;  2QJK C;  2YFI A;  1L0N E;  1KYO E;  1NDO A;  3N0Q A;  3L71 E;  4AAY B;  2XRX A;  5BOK A;  2HMO A;  1G8J B;  1UUV A;  1NYK A;  1NTK E;  3L72 E;  1SJG A;  1RFS A;  3EN1 A;  3C0D A;  4NBG D;  4P1B H;  1SQV E;  2BMO A;  2YFL A;  4QUR A;  2BMR A;  3GOB A;  3GZX A;  2HMK A;  3CXH E;  3GTS A;  5KKZ C;  1VCK A;  4HM0 A;  3D89 A;  2QJP C;  1SQX E;  3GZY A;  2BCC E;  2ZYL A;  2XSO A;  1KB9 E;  2A06 E;  2JO6 A;  3TGU E;  4QCK A;  4NB9 D;  5HL4 A;  4HJL A;  5AEU A;  1PPJ E;  1RIE A;  2B24 A;  5CXM A;  1P84 E;  2IBZ E;  3GL2 A;  4HM3 A;  4NB8 D;  3GCE A;  4U3F E;  4NBC D;  1O7N A;  3DQY A;  2QPZ A;  4NBA D;  5KLV E;  1VF5 D;  3VMI D;  2E76 D;  1VM9 A;  2FYU E;  3L70 E;  1O7G A;  4QDC A;  2DE6 D;  2CKF A; 
#chains in the Genus database with same CATH topology
 2D2C D;  2I7F A;  4PD4 E;  2B1X A;  4QDF B;  5KLI C;  4NBD D;  1SQP E;  4HM2 A;  3GKE A;  2E75 D;  1JM1 A;  3FOU A;  2DE5 D;  2NUK A;  2NVG A;  1NTM E;  4P1C H;  3GTE A;  2QJY C;  1BE3 E;  1EG9 A;  4OGQ D;  1O7M A;  4HM8 A;  4QUP A;  2YVJ B;  4EMJ B;  1BCC E;  4HM1 A;  1SQQ E;  2GBW A;  2GBX A;  1FQT A;  4H44 D;  4QDF A;  2XSH A;  4HM6 A;  3VMH D;  1Q90 C;  4AIV A;  1PP9 E;  2E4P A;  4HM5 A;  2NVF A;  4NBE D;  3H1L E;  1SQB E;  3VMG D;  1L0L E;  1O7H A;  1G8K B;  4NBB D;  2DE7 D;  5AEW A;  3EQQ A;  3GL0 A;  1WQL A;  1UUW A;  4NBF D;  1NTZ E;  3BCC E;  3VCP A;  2NWF A;  3H1J E;  3GB4 A;  1O7W A;  4HKV A;  4HM7 A;  3L75 E;  4PV1 D;  2HML A;  1O7P A;  2BMQ A;  1ZRT E;  2E74 D;  3H1I E;  3L73 E;  4QDD A;  1ULJ A;  2ZT9 D;  3VCA A;  2YFJ A;  4H0L D;  2HMM A;  2HMJ A;  3H1K E;  1EZV E;  1NU1 E;  2HMN A;  3L74 E;  2XR8 A;  3AZC A;  4QUQ A;  1ULI A;  3CX5 E;  2Q3W A;  3CWB E;  2FYN C;  2NVE A;  2NUM A;  2YIU C;  3H1H E;  4H13 D;  4HM4 A;  2E4Q A;  4NBH D;  2JZA A;  2QJK C;  2YFI A;  1L0N E;  1KYO E;  1NDO A;  3N0Q A;  3L71 E;  4AAY B;  2XRX A;  5BOK A;  2HMO A;  1G8J B;  1UUV A;  1NYK A;  1NTK E;  3L72 E;  1SJG A;  1RFS A;  3EN1 A;  3C0D A;  4NBG D;  4P1B H;  1SQV E;  2BMO A;  2YFL A;  4QUR A;  2BMR A;  3GOB A;  3GZX A;  2HMK A;  3CXH E;  3GTS A;  5KKZ C;  1VCK A;  4HM0 A;  3D89 A;  2QJP C;  1SQX E;  3GZY A;  2BCC E;  2ZYL A;  2XSO A;  1KB9 E;  2A06 E;  2JO6 A;  3TGU E;  4QCK A;  4NB9 D;  5HL4 A;  4HJL A;  5AEU A;  1PPJ E;  1RIE A;  2B24 A;  5CXM A;  1P84 E;  2IBZ E;  3GL2 A;  4HM3 A;  4NB8 D;  3GCE A;  4U3F E;  4NBC D;  1O7N A;  3DQY A;  2QPZ A;  4NBA D;  5KLV E;  1VF5 D;  3VMI D;  2E76 D;  1VM9 A;  2FYU E;  3L70 E;  1O7G A;  4QDC A;  2DE6 D;  2CKF A; 
#chains in the Genus database with same CATH homology
 2D2C D;  2I7F A;  4PD4 E;  2B1X A;  4QDF B;  5KLI C;  4NBD D;  1SQP E;  4HM2 A;  3GKE A;  2E75 D;  1JM1 A;  3FOU A;  2DE5 D;  2NUK A;  2NVG A;  1NTM E;  4P1C H;  3GTE A;  2QJY C;  1BE3 E;  1EG9 A;  4OGQ D;  1O7M A;  4HM8 A;  4QUP A;  2YVJ B;  4EMJ B;  1BCC E;  4HM1 A;  1SQQ E;  2GBW A;  2GBX A;  1FQT A;  4H44 D;  4QDF A;  2XSH A;  4HM6 A;  3VMH D;  1Q90 C;  4AIV A;  1PP9 E;  2E4P A;  4HM5 A;  2NVF A;  4NBE D;  3H1L E;  1SQB E;  3VMG D;  1L0L E;  1O7H A;  1G8K B;  4NBB D;  2DE7 D;  5AEW A;  3EQQ A;  3GL0 A;  1WQL A;  1UUW A;  4NBF D;  1NTZ E;  3BCC E;  3VCP A;  2NWF A;  3H1J E;  3GB4 A;  1O7W A;  4HKV A;  4HM7 A;  3L75 E;  4PV1 D;  2HML A;  1O7P A;  2BMQ A;  1ZRT E;  2E74 D;  3H1I E;  3L73 E;  4QDD A;  1ULJ A;  2ZT9 D;  3VCA A;  2YFJ A;  4H0L D;  2HMM A;  2HMJ A;  3H1K E;  1EZV E;  1NU1 E;  2HMN A;  3L74 E;  2XR8 A;  3AZC A;  4QUQ A;  1ULI A;  3CX5 E;  2Q3W A;  3CWB E;  2FYN C;  2NVE A;  2NUM A;  2YIU C;  3H1H E;  4H13 D;  4HM4 A;  2E4Q A;  4NBH D;  2JZA A;  2QJK C;  2YFI A;  1L0N E;  1KYO E;  1NDO A;  3N0Q A;  3L71 E;  4AAY B;  2XRX A;  5BOK A;  2HMO A;  1G8J B;  1UUV A;  1NYK A;  1NTK E;  3L72 E;  1SJG A;  1RFS A;  3EN1 A;  3C0D A;  4NBG D;  4P1B H;  1SQV E;  2BMO A;  2YFL A;  4QUR A;  2BMR A;  3GOB A;  3GZX A;  2HMK A;  3CXH E;  3GTS A;  5KKZ C;  1VCK A;  4HM0 A;  3D89 A;  2QJP C;  1SQX E;  3GZY A;  2BCC E;  2ZYL A;  2XSO A;  1KB9 E;  2A06 E;  2JO6 A;  3TGU E;  4QCK A;  4NB9 D;  5HL4 A;  4HJL A;  5AEU A;  1PPJ E;  1RIE A;  2B24 A;  5CXM A;  1P84 E;  2IBZ E;  3GL2 A;  4HM3 A;  4NB8 D;  3GCE A;  4U3F E;  4NBC D;  1O7N A;  3DQY A;  2QPZ A;  4NBA D;  5KLV E;  1VF5 D;  3VMI D;  2E76 D;  1VM9 A;  2FYU E;  3L70 E;  1O7G A;  4QDC A;  2DE6 D;  2CKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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