4HM0A

Naphthalene 1,2-dioxygenase bound to indole-3-acetate
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
source organism Pseudomonas sp. c18
publication title Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
rcsb
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 160
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm0A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm0A01
2HMOA 1P84E 4QDDA 2HMNA 4NBAD 2JZAA 4HM4A 2DE7D 2CKFA 5KLVE 4HM3A 5AEUA 1ULJA 3VMID 3CX5E 3TGUE 1Z01A 2YVJB 2D2CD 2ZT9D 4NBAA 1O7GA 1NTZE 4NBGD 2NUMA 3VMIA 3L74E 2Q3WA 3L75E 1SQVE 1SQQE 1G8JB 3GL0A 5HL4A 4NBFD 3GCEA 3GTEA 1KYOE 3VMHD 1SQBE 4HM7A 1RFSA 2GBXA 3L71E 4NBFA 1BE3E 2E76D 1O7WA 2BCCE 4QUPA 4HM1A 1VF5D 2BMOA 5AEWA 4HM2A 3H1HE 5CXMA 3L72E 2DE5A 3N0QA 2E75D 2GBWA 2YFLA 1ZRTE 1NYKA 3GOBA 4HM6A 1RIEA 1L0LE 4NBED 4PV1D 4AAYB 4H44D 4QUQA 1O7NA 2I7FA 3FOUA 4QDCA 4NBEA 4HM8A 2B1XA 5BOKA 3H1IE 2YFIA 3CXHE 4QDFB 1NU1E 4H13D 3EN1A 3C0DA 4P1BH 1JM1A 4NBBD 4P1CH 4NBDA 4NBHA 1ULIA 4PD4E 2DE6A 1SQPE 2NUKA 4NBBA 3GKQA 2DE5D 3DQYA 1UUWA 1NTME 3GB4A 3GZYA 4HM5A 1FQTA 1Q90C 2ZYLA 5KLIC 1VCKA 2XRXA 2NWFA 2NVFA 1VM9A 1G8KB 5KKZC 2IBZE 3GKEA 1KB9E 3GZXA 4HKVA 1EG9A 4U3FE 3VMGA 2HMLA 1O7PA 2HMJA 2QPZA 4NBCA 2XSOA 1NTKE 4OGQD 2QJYC 4QCKA 2QJKC 2FYNC 1WQLA 3H1JE 4NBDD 4NBHD 4QDFA 2DE6D 1NDOA 3CWBE 4NB9A 2XSHA 1BCCE 1O7MA 3AZCA 3GCFA 1SJGA 4NB8A 4QURA 3GTSA 4AIVA 2FYUE 3GL2A 3L70E 1PPJE 2HMKA 1Z03A 2BMRA 4H0LD 2BMQA 3VCAA 1WW9A 3L73E 3H1LE 3D89A 1SQXE 3VMGD 2DE7A 4HJLA 4NBCD 1UUVA 2XR8A 2YIUC 1O7HA 2NVGA 1Z02A 4NBGA 2QJPC 2YFJA 2A06E 3VCPA 4NB9D 4HM0A 2JO6A 4EMJB 3VMHA 2E4PA 2NVEA 3BCCE 1PP9E 1L0NE 2HMMA 4NB8D 3H1KE 2B24A 2E74D 3EQQA 1EZVE 2E4QA
chains in the Genus database with same CATH superfamily
2HMOA 1P84E 4QDDA 2HMNA 4NBAD 2JZAA 4HM4A 2DE7D 2CKFA 5KLVE 4HM3A 5AEUA 1ULJA 3VMID 3CX5E 3TGUE 1Z01A 2YVJB 2D2CD 2ZT9D 4NBAA 1O7GA 1NTZE 4NBGD 2NUMA 3VMIA 3L74E 2Q3WA 3L75E 1SQVE 1SQQE 1G8JB 3GL0A 5HL4A 4NBFD 3GCEA 3GTEA 1KYOE 3VMHD 1SQBE 4HM7A 1RFSA 2GBXA 3L71E 4NBFA 1BE3E 2E76D 1O7WA 2BCCE 4QUPA 4HM1A 1VF5D 2BMOA 5AEWA 4HM2A 3H1HE 5CXMA 3L72E 2DE5A 3N0QA 2E75D 2GBWA 2YFLA 1ZRTE 1NYKA 3GOBA 4HM6A 1RIEA 1L0LE 4NBED 4PV1D 4AAYB 4H44D 4QUQA 1O7NA 2I7FA 3FOUA 4QDCA 4NBEA 4HM8A 2B1XA 5BOKA 3H1IE 2YFIA 3CXHE 4QDFB 1NU1E 4H13D 3EN1A 3C0DA 4P1BH 1JM1A 4NBBD 4P1CH 4NBDA 4NBHA 1ULIA 4PD4E 2DE6A 1SQPE 2NUKA 4NBBA 3GKQA 2DE5D 3DQYA 1UUWA 1NTME 3GB4A 3GZYA 4HM5A 1FQTA 1Q90C 2ZYLA 5KLIC 1VCKA 2XRXA 2NWFA 2NVFA 1VM9A 1G8KB 5KKZC 2IBZE 3GKEA 1KB9E 3GZXA 4HKVA 1EG9A 4U3FE 3VMGA 2HMLA 1O7PA 2HMJA 2QPZA 4NBCA 2XSOA 1NTKE 4OGQD 2QJYC 4QCKA 2QJKC 2FYNC 1WQLA 3H1JE 4NBDD 4NBHD 4QDFA 2DE6D 1NDOA 3CWBE 4NB9A 2XSHA 1BCCE 1O7MA 3AZCA 3GCFA 1SJGA 4NB8A 4QURA 3GTSA 4AIVA 2FYUE 3GL2A 3L70E 1PPJE 2HMKA 1Z03A 2BMRA 4H0LD 2BMQA 3VCAA 1WW9A 3L73E 3H1LE 3D89A 1SQXE 3VMGD 2DE7A 4HJLA 4NBCD 1UUVA 2XR8A 2YIUC 1O7HA 2NVGA 1Z02A 4NBGA 2QJPC 2YFJA 2A06E 3VCPA 4NB9D 4HM0A 2JO6A 4EMJB 3VMHA 2E4PA 2NVEA 3BCCE 1PP9E 1L0NE 2HMMA 4NB8D 3H1KE 2B24A 2E74D 3EQQA 1EZVE 2E4QA
chains in the Genus database with same CATH topology
2HMOA 1P84E 4QDDA 2HMNA 4NBAD 2JZAA 4HM4A 2DE7D 2CKFA 5KLVE 4HM3A 5AEUA 1ULJA 3VMID 3CX5E 3TGUE 1Z01A 2YVJB 2D2CD 2ZT9D 4NBAA 1O7GA 1NTZE 4NBGD 2NUMA 3VMIA 3L74E 2Q3WA 3L75E 1SQVE 1SQQE 1G8JB 3GL0A 5HL4A 4NBFD 3GCEA 3GTEA 1KYOE 3VMHD 1SQBE 4HM7A 1RFSA 2GBXA 3L71E 4NBFA 1BE3E 2E76D 1O7WA 2BCCE 4QUPA 4HM1A 1VF5D 2BMOA 5AEWA 4HM2A 3H1HE 5CXMA 3L72E 2DE5A 3N0QA 2E75D 2GBWA 2YFLA 1ZRTE 1NYKA 3GOBA 4HM6A 1RIEA 1L0LE 4NBED 4PV1D 4AAYB 4H44D 4QUQA 1O7NA 2I7FA 3FOUA 4QDCA 4NBEA 4HM8A 2B1XA 5BOKA 3H1IE 2YFIA 3CXHE 4QDFB 1NU1E 4H13D 3EN1A 3C0DA 4P1BH 1JM1A 4NBBD 4P1CH 4NBDA 4NBHA 1ULIA 4PD4E 2DE6A 1SQPE 2NUKA 4NBBA 3GKQA 2DE5D 3DQYA 1UUWA 1NTME 3GB4A 3GZYA 4HM5A 1FQTA 1Q90C 2ZYLA 5KLIC 1VCKA 2XRXA 2NWFA 2NVFA 1VM9A 1G8KB 5KKZC 2IBZE 3GKEA 1KB9E 3GZXA 4HKVA 1EG9A 4U3FE 3VMGA 2HMLA 1O7PA 2HMJA 2QPZA 4NBCA 2XSOA 1NTKE 4OGQD 2QJYC 4QCKA 2QJKC 2FYNC 1WQLA 3H1JE 4NBDD 4NBHD 4QDFA 2DE6D 1NDOA 3CWBE 4NB9A 2XSHA 1BCCE 1O7MA 3AZCA 3GCFA 1SJGA 4NB8A 4QURA 3GTSA 4AIVA 2FYUE 3GL2A 3L70E 1PPJE 2HMKA 1Z03A 2BMRA 4H0LD 2BMQA 3VCAA 1WW9A 3L73E 3H1LE 3D89A 1SQXE 3VMGD 2DE7A 4HJLA 4NBCD 1UUVA 2XR8A 2YIUC 1O7HA 2NVGA 1Z02A 4NBGA 2QJPC 2YFJA 2A06E 3VCPA 4NB9D 4HM0A 2JO6A 4EMJB 3VMHA 2E4PA 2NVEA 3BCCE 1PP9E 1L0NE 2HMMA 4NB8D 3H1KE 2B24A 2E74D 3EQQA 1EZVE 2E4QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMO A;  1P84 E;  4QDD A;  2HMN A;  4NBA D;  2JZA A;  4HM4 A;  2DE7 D;  2CKF A;  5KLV E;  4HM3 A;  5AEU A;  1ULJ A;  3VMI D;  3CX5 E;  3TGU E;  1Z01 A;  2YVJ B;  2D2C D;  2ZT9 D;  4NBA A;  1O7G A;  1NTZ E;  4NBG D;  2NUM A;  3VMI A;  3L74 E;  2Q3W A;  3L75 E;  1SQV E;  1SQQ E;  1G8J B;  3GL0 A;  5HL4 A;  4NBF D;  3GCE A;  3GTE A;  1KYO E;  3VMH D;  1SQB E;  4HM7 A;  1RFS A;  2GBX A;  3L71 E;  4NBF A;  1BE3 E;  2E76 D;  1O7W A;  2BCC E;  4QUP A;  4HM1 A;  1VF5 D;  2BMO A;  5AEW A;  4HM2 A;  3H1H E;  5CXM A;  3L72 E;  2DE5 A;  3N0Q A;  2E75 D;  2GBW A;  2YFL A;  1ZRT E;  1NYK A;  3GOB A;  4HM6 A;  1RIE A;  1L0L E;  4NBE D;  4PV1 D;  4AAY B;  4H44 D;  4QUQ A;  1O7N A;  2I7F A;  3FOU A;  4QDC A;  4NBE A;  4HM8 A;  2B1X A;  5BOK A;  3H1I E;  2YFI A;  3CXH E;  4QDF B;  1NU1 E;  4H13 D;  3EN1 A;  3C0D A;  4P1B H;  1JM1 A;  4NBB D;  4P1C H;  4NBD A;  4NBH A;  1ULI A;  4PD4 E;  2DE6 A;  1SQP E;  2NUK A;  4NBB A;  3GKQ A;  2DE5 D;  3DQY A;  1UUW A;  1NTM E;  3GB4 A;  3GZY A;  4HM5 A;  1FQT A;  1Q90 C;  2ZYL A;  5KLI C;  1VCK A;  2XRX A;  2NWF A;  2NVF A;  1VM9 A;  1G8K B;  5KKZ C;  2IBZ E;  3GKE A;  1KB9 E;  3GZX A;  4HKV A;  1EG9 A;  4U3F E;  3VMG A;  2HML A;  1O7P A;  2HMJ A;  2QPZ A;  4NBC A;  2XSO A;  1NTK E;  4OGQ D;  2QJY C;  4QCK A;  2QJK C;  2FYN C;  1WQL A;  3H1J E;  4NBD D;  4NBH D;  4QDF A;  2DE6 D;  1NDO A;  3CWB E;  4NB9 A;  2XSH A;  1BCC E;  1O7M A;  3AZC A;  3GCF A;  1SJG A;  4NB8 A;  4QUR A;  3GTS A;  4AIV A;  2FYU E;  3GL2 A;  3L70 E;  1PPJ E;  2HMK A;  1Z03 A;  2BMR A;  4H0L D;  2BMQ A;  3VCA A;  1WW9 A;  3L73 E;  3H1L E;  3D89 A;  1SQX E;  3VMG D;  2DE7 A;  4HJL A;  4NBC D;  1UUV A;  2XR8 A;  2YIU C;  1O7H A;  2NVG A;  1Z02 A;  4NBG A;  2QJP C;  2YFJ A;  2A06 E;  3VCP A;  4NB9 D;  4HM0 A;  2JO6 A;  4EMJ B;  3VMH A;  2E4P A;  2NVE A;  3BCC E;  1PP9 E;  1L0N E;  2HMM A;  4NB8 D;  3H1K E;  2B24 A;  2E74 D;  3EQQ A;  1EZV E;  2E4Q A; 
#chains in the Genus database with same CATH topology
 2HMO A;  1P84 E;  4QDD A;  2HMN A;  4NBA D;  2JZA A;  4HM4 A;  2DE7 D;  2CKF A;  5KLV E;  4HM3 A;  5AEU A;  1ULJ A;  3VMI D;  3CX5 E;  3TGU E;  1Z01 A;  2YVJ B;  2D2C D;  2ZT9 D;  4NBA A;  1O7G A;  1NTZ E;  4NBG D;  2NUM A;  3VMI A;  3L74 E;  2Q3W A;  3L75 E;  1SQV E;  1SQQ E;  1G8J B;  3GL0 A;  5HL4 A;  4NBF D;  3GCE A;  3GTE A;  1KYO E;  3VMH D;  1SQB E;  4HM7 A;  1RFS A;  2GBX A;  3L71 E;  4NBF A;  1BE3 E;  2E76 D;  1O7W A;  2BCC E;  4QUP A;  4HM1 A;  1VF5 D;  2BMO A;  5AEW A;  4HM2 A;  3H1H E;  5CXM A;  3L72 E;  2DE5 A;  3N0Q A;  2E75 D;  2GBW A;  2YFL A;  1ZRT E;  1NYK A;  3GOB A;  4HM6 A;  1RIE A;  1L0L E;  4NBE D;  4PV1 D;  4AAY B;  4H44 D;  4QUQ A;  1O7N A;  2I7F A;  3FOU A;  4QDC A;  4NBE A;  4HM8 A;  2B1X A;  5BOK A;  3H1I E;  2YFI A;  3CXH E;  4QDF B;  1NU1 E;  4H13 D;  3EN1 A;  3C0D A;  4P1B H;  1JM1 A;  4NBB D;  4P1C H;  4NBD A;  4NBH A;  1ULI A;  4PD4 E;  2DE6 A;  1SQP E;  2NUK A;  4NBB A;  3GKQ A;  2DE5 D;  3DQY A;  1UUW A;  1NTM E;  3GB4 A;  3GZY A;  4HM5 A;  1FQT A;  1Q90 C;  2ZYL A;  5KLI C;  1VCK A;  2XRX A;  2NWF A;  2NVF A;  1VM9 A;  1G8K B;  5KKZ C;  2IBZ E;  3GKE A;  1KB9 E;  3GZX A;  4HKV A;  1EG9 A;  4U3F E;  3VMG A;  2HML A;  1O7P A;  2HMJ A;  2QPZ A;  4NBC A;  2XSO A;  1NTK E;  4OGQ D;  2QJY C;  4QCK A;  2QJK C;  2FYN C;  1WQL A;  3H1J E;  4NBD D;  4NBH D;  4QDF A;  2DE6 D;  1NDO A;  3CWB E;  4NB9 A;  2XSH A;  1BCC E;  1O7M A;  3AZC A;  3GCF A;  1SJG A;  4NB8 A;  4QUR A;  3GTS A;  4AIV A;  2FYU E;  3GL2 A;  3L70 E;  1PPJ E;  2HMK A;  1Z03 A;  2BMR A;  4H0L D;  2BMQ A;  3VCA A;  1WW9 A;  3L73 E;  3H1L E;  3D89 A;  1SQX E;  3VMG D;  2DE7 A;  4HJL A;  4NBC D;  1UUV A;  2XR8 A;  2YIU C;  1O7H A;  2NVG A;  1Z02 A;  4NBG A;  2QJP C;  2YFJ A;  2A06 E;  3VCP A;  4NB9 D;  4HM0 A;  2JO6 A;  4EMJ B;  3VMH A;  2E4P A;  2NVE A;  3BCC E;  1PP9 E;  1L0N E;  2HMM A;  4NB8 D;  3H1K E;  2B24 A;  2E74 D;  3EQQ A;  1EZV E;  2E4Q A; 
#chains in the Genus database with same CATH homology
 2HMO A;  1P84 E;  4QDD A;  2HMN A;  4NBA D;  2JZA A;  4HM4 A;  2DE7 D;  2CKF A;  5KLV E;  4HM3 A;  5AEU A;  1ULJ A;  3VMI D;  3CX5 E;  3TGU E;  1Z01 A;  2YVJ B;  2D2C D;  2ZT9 D;  4NBA A;  1O7G A;  1NTZ E;  4NBG D;  2NUM A;  3VMI A;  3L74 E;  2Q3W A;  3L75 E;  1SQV E;  1SQQ E;  1G8J B;  3GL0 A;  5HL4 A;  4NBF D;  3GCE A;  3GTE A;  1KYO E;  3VMH D;  1SQB E;  4HM7 A;  1RFS A;  2GBX A;  3L71 E;  4NBF A;  1BE3 E;  2E76 D;  1O7W A;  2BCC E;  4QUP A;  4HM1 A;  1VF5 D;  2BMO A;  5AEW A;  4HM2 A;  3H1H E;  5CXM A;  3L72 E;  2DE5 A;  3N0Q A;  2E75 D;  2GBW A;  2YFL A;  1ZRT E;  1NYK A;  3GOB A;  4HM6 A;  1RIE A;  1L0L E;  4NBE D;  4PV1 D;  4AAY B;  4H44 D;  4QUQ A;  1O7N A;  2I7F A;  3FOU A;  4QDC A;  4NBE A;  4HM8 A;  2B1X A;  5BOK A;  3H1I E;  2YFI A;  3CXH E;  4QDF B;  1NU1 E;  4H13 D;  3EN1 A;  3C0D A;  4P1B H;  1JM1 A;  4NBB D;  4P1C H;  4NBD A;  4NBH A;  1ULI A;  4PD4 E;  2DE6 A;  1SQP E;  2NUK A;  4NBB A;  3GKQ A;  2DE5 D;  3DQY A;  1UUW A;  1NTM E;  3GB4 A;  3GZY A;  4HM5 A;  1FQT A;  1Q90 C;  2ZYL A;  5KLI C;  1VCK A;  2XRX A;  2NWF A;  2NVF A;  1VM9 A;  1G8K B;  5KKZ C;  2IBZ E;  3GKE A;  1KB9 E;  3GZX A;  4HKV A;  1EG9 A;  4U3F E;  3VMG A;  2HML A;  1O7P A;  2HMJ A;  2QPZ A;  4NBC A;  2XSO A;  1NTK E;  4OGQ D;  2QJY C;  4QCK A;  2QJK C;  2FYN C;  1WQL A;  3H1J E;  4NBD D;  4NBH D;  4QDF A;  2DE6 D;  1NDO A;  3CWB E;  4NB9 A;  2XSH A;  1BCC E;  1O7M A;  3AZC A;  3GCF A;  1SJG A;  4NB8 A;  4QUR A;  3GTS A;  4AIV A;  2FYU E;  3GL2 A;  3L70 E;  1PPJ E;  2HMK A;  1Z03 A;  2BMR A;  4H0L D;  2BMQ A;  3VCA A;  1WW9 A;  3L73 E;  3H1L E;  3D89 A;  1SQX E;  3VMG D;  2DE7 A;  4HJL A;  4NBC D;  1UUV A;  2XR8 A;  2YIU C;  1O7H A;  2NVG A;  1Z02 A;  4NBG A;  2QJP C;  2YFJ A;  2A06 E;  3VCP A;  4NB9 D;  4HM0 A;  2JO6 A;  4EMJ B;  3VMH A;  2E4P A;  2NVE A;  3BCC E;  1PP9 E;  1L0N E;  2HMM A;  4NB8 D;  3H1K E;  2B24 A;  2E74 D;  3EQQ A;  1EZV E;  2E4Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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