4HM0A

Naphthalene 1,2-dioxygenase bound to indole-3-acetate
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm0A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm0A01
2QJKC 1KYOE 2HMOA 4HM4A 3CX5E 3L71E 2XSOA 4NBEA 4PV1D 2NWFA 4NBHD 3GCFA 2GBXA 1ULJA 2DE5D 4HM3A 1VM9A 4HM1A 4U3FE 3BCCE 1Q90C 4NBAD 4OGQD 1Z02A 3VMID 5BOKA 1WQLA 3L75E 1RIEA 1O7NA 2B1XA 3GZXA 1NDOA 2D2CD 5AEWA 1FQTA 1SQQE 2HMLA 2NVEA 1EG9A 4NB9D 1PP9E 4H44D 3CXHE 2YFIA 1RFSA 5AEUA 1SJGA 1ULIA 1SQPE 3VMHD 3GTSA 2YFLA 1G8JB 4HJLA 2ZYLA 2BCCE 2IBZE 4HM6A 4NBBD 3VMHA 1NTKE 4EMJB 3D89A 1UUWA 4H13D 2HMJA 3H1KE 4QDFA 3L73E 4NBFD 4AAYB 5HL4A 4NBBA 3EN1A 2NUKA 1O7HA 3GZYA 1NTME 1NTZE 3H1LE 5CXMA 2DE6A 2GBWA 2A06E 3EQQA 1L0NE 2CKFA 3GOBA 3GKEA 3DQYA 1EZVE 4NBDD 4NBFA 3GCEA 4HM8A 2E4QA 2E74D 1VF5D 1SQXE 4HM7A 4NBCA 3AZCA 2DE7D 3CWBE 3GL2A 3N0QA 4P1CH 2I7FA 2B24A 2YVJB 3GB4A 1G8KB 3H1IE 2QJPC 1Z01A 4NBDA 1L0LE 2E76D 2XSHA 2NUMA 3H1HE 2DE7A 2JO6A 3VMGA 2DE6D 4QDCA 1UUVA 3C0DA 4QDDA 2E4PA 3L72E 2BMQA 2YIUC 4NB8D 2YFJA 4QURA 4AIVA 1JM1A 1Z03A 4HM2A 3L74E 4NBCD 1P84E 4HM5A 5KKZC 1NU1E 4NBGA 4NB8A 1KB9E 2QJYC 2NVGA 1SQBE 2HMKA 3H1JE 1NYKA 2JZAA 2E75D 2FYUE 2XR8A 3GL0A 2BMOA 4QUQA 4QCKA 1VCKA 1SQVE 3L70E 4HKVA 3VMGD 1ZRTE 1BE3E 1O7GA 2HMMA 3GTEA 5KLVE 4QUPA 3VCPA 1WW9A 3TGUE 4NBHA 5KLIC 3VCAA 2HMNA 3GKQA 2DE5A 2FYNC 4NBGD 1O7PA 4NBAA 3VMIA 2XRXA 2NVFA 1O7WA 4P1BH 2QPZA 2ZT9D 4QDFB 2Q3WA 4H0LD 4HM0A 4PD4E 1PPJE 4NBED 2BMRA 3FOUA 1BCCE 1O7MA 4NB9A
chains in the Genus database with same CATH superfamily
2QJKC 1KYOE 2HMOA 4HM4A 3CX5E 3L71E 2XSOA 4NBEA 4PV1D 2NWFA 4NBHD 3GCFA 2GBXA 1ULJA 2DE5D 4HM3A 1VM9A 4HM1A 4U3FE 3BCCE 1Q90C 4NBAD 4OGQD 1Z02A 3VMID 5BOKA 1WQLA 3L75E 1RIEA 1O7NA 2B1XA 3GZXA 1NDOA 2D2CD 5AEWA 1FQTA 1SQQE 2HMLA 2NVEA 1EG9A 4NB9D 1PP9E 4H44D 3CXHE 2YFIA 1RFSA 5AEUA 1SJGA 1ULIA 1SQPE 3VMHD 3GTSA 2YFLA 1G8JB 4HJLA 2ZYLA 2BCCE 2IBZE 4HM6A 4NBBD 3VMHA 1NTKE 4EMJB 3D89A 1UUWA 4H13D 2HMJA 3H1KE 4QDFA 3L73E 4NBFD 4AAYB 5HL4A 4NBBA 3EN1A 2NUKA 1O7HA 3GZYA 1NTME 1NTZE 3H1LE 5CXMA 2DE6A 2GBWA 2A06E 3EQQA 1L0NE 2CKFA 3GOBA 3GKEA 3DQYA 1EZVE 4NBDD 4NBFA 3GCEA 4HM8A 2E4QA 2E74D 1VF5D 1SQXE 4HM7A 4NBCA 3AZCA 2DE7D 3CWBE 3GL2A 3N0QA 4P1CH 2I7FA 2B24A 2YVJB 3GB4A 1G8KB 3H1IE 2QJPC 1Z01A 4NBDA 1L0LE 2E76D 2XSHA 2NUMA 3H1HE 2DE7A 2JO6A 3VMGA 2DE6D 4QDCA 1UUVA 3C0DA 4QDDA 2E4PA 3L72E 2BMQA 2YIUC 4NB8D 2YFJA 4QURA 4AIVA 1JM1A 1Z03A 4HM2A 3L74E 4NBCD 1P84E 4HM5A 5KKZC 1NU1E 4NBGA 4NB8A 1KB9E 2QJYC 2NVGA 1SQBE 2HMKA 3H1JE 1NYKA 2JZAA 2E75D 2FYUE 2XR8A 3GL0A 2BMOA 4QUQA 4QCKA 1VCKA 1SQVE 3L70E 4HKVA 3VMGD 1ZRTE 1BE3E 1O7GA 2HMMA 3GTEA 5KLVE 4QUPA 3VCPA 1WW9A 3TGUE 4NBHA 5KLIC 3VCAA 2HMNA 3GKQA 2DE5A 2FYNC 4NBGD 1O7PA 4NBAA 3VMIA 2XRXA 2NVFA 1O7WA 4P1BH 2QPZA 2ZT9D 4QDFB 2Q3WA 4H0LD 4HM0A 4PD4E 1PPJE 4NBED 2BMRA 3FOUA 1BCCE 1O7MA 4NB9A
chains in the Genus database with same CATH topology
2QJKC 1KYOE 2HMOA 4HM4A 3CX5E 3L71E 2XSOA 4NBEA 4PV1D 2NWFA 4NBHD 3GCFA 2GBXA 1ULJA 2DE5D 4HM3A 1VM9A 4HM1A 4U3FE 3BCCE 1Q90C 4NBAD 4OGQD 1Z02A 3VMID 5BOKA 1WQLA 3L75E 1RIEA 1O7NA 2B1XA 3GZXA 1NDOA 2D2CD 5AEWA 1FQTA 1SQQE 2HMLA 2NVEA 1EG9A 4NB9D 1PP9E 4H44D 3CXHE 2YFIA 1RFSA 5AEUA 1SJGA 1ULIA 1SQPE 3VMHD 3GTSA 2YFLA 1G8JB 4HJLA 2ZYLA 2BCCE 2IBZE 4HM6A 4NBBD 3VMHA 1NTKE 4EMJB 3D89A 1UUWA 4H13D 2HMJA 3H1KE 4QDFA 3L73E 4NBFD 4AAYB 5HL4A 4NBBA 3EN1A 2NUKA 1O7HA 3GZYA 1NTME 1NTZE 3H1LE 5CXMA 2DE6A 2GBWA 2A06E 3EQQA 1L0NE 2CKFA 3GOBA 3GKEA 3DQYA 1EZVE 4NBDD 4NBFA 3GCEA 4HM8A 2E4QA 2E74D 1VF5D 1SQXE 4HM7A 4NBCA 3AZCA 2DE7D 3CWBE 3GL2A 3N0QA 4P1CH 2I7FA 2B24A 2YVJB 3GB4A 1G8KB 3H1IE 2QJPC 1Z01A 4NBDA 1L0LE 2E76D 2XSHA 2NUMA 3H1HE 2DE7A 2JO6A 3VMGA 2DE6D 4QDCA 1UUVA 3C0DA 4QDDA 2E4PA 3L72E 2BMQA 2YIUC 4NB8D 2YFJA 4QURA 4AIVA 1JM1A 1Z03A 4HM2A 3L74E 4NBCD 1P84E 4HM5A 5KKZC 1NU1E 4NBGA 4NB8A 1KB9E 2QJYC 2NVGA 1SQBE 2HMKA 3H1JE 1NYKA 2JZAA 2E75D 2FYUE 2XR8A 3GL0A 2BMOA 4QUQA 4QCKA 1VCKA 1SQVE 3L70E 4HKVA 3VMGD 1ZRTE 1BE3E 1O7GA 2HMMA 3GTEA 5KLVE 4QUPA 3VCPA 1WW9A 3TGUE 4NBHA 5KLIC 3VCAA 2HMNA 3GKQA 2DE5A 2FYNC 4NBGD 1O7PA 4NBAA 3VMIA 2XRXA 2NVFA 1O7WA 4P1BH 2QPZA 2ZT9D 4QDFB 2Q3WA 4H0LD 4HM0A 4PD4E 1PPJE 4NBED 2BMRA 3FOUA 1BCCE 1O7MA 4NB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJK C;  1KYO E;  2HMO A;  4HM4 A;  3CX5 E;  3L71 E;  2XSO A;  4NBE A;  4PV1 D;  2NWF A;  4NBH D;  3GCF A;  2GBX A;  1ULJ A;  2DE5 D;  4HM3 A;  1VM9 A;  4HM1 A;  4U3F E;  3BCC E;  1Q90 C;  4NBA D;  4OGQ D;  1Z02 A;  3VMI D;  5BOK A;  1WQL A;  3L75 E;  1RIE A;  1O7N A;  2B1X A;  3GZX A;  1NDO A;  2D2C D;  5AEW A;  1FQT A;  1SQQ E;  2HML A;  2NVE A;  1EG9 A;  4NB9 D;  1PP9 E;  4H44 D;  3CXH E;  2YFI A;  1RFS A;  5AEU A;  1SJG A;  1ULI A;  1SQP E;  3VMH D;  3GTS A;  2YFL A;  1G8J B;  4HJL A;  2ZYL A;  2BCC E;  2IBZ E;  4HM6 A;  4NBB D;  3VMH A;  1NTK E;  4EMJ B;  3D89 A;  1UUW A;  4H13 D;  2HMJ A;  3H1K E;  4QDF A;  3L73 E;  4NBF D;  4AAY B;  5HL4 A;  4NBB A;  3EN1 A;  2NUK A;  1O7H A;  3GZY A;  1NTM E;  1NTZ E;  3H1L E;  5CXM A;  2DE6 A;  2GBW A;  2A06 E;  3EQQ A;  1L0N E;  2CKF A;  3GOB A;  3GKE A;  3DQY A;  1EZV E;  4NBD D;  4NBF A;  3GCE A;  4HM8 A;  2E4Q A;  2E74 D;  1VF5 D;  1SQX E;  4HM7 A;  4NBC A;  3AZC A;  2DE7 D;  3CWB E;  3GL2 A;  3N0Q A;  4P1C H;  2I7F A;  2B24 A;  2YVJ B;  3GB4 A;  1G8K B;  3H1I E;  2QJP C;  1Z01 A;  4NBD A;  1L0L E;  2E76 D;  2XSH A;  2NUM A;  3H1H E;  2DE7 A;  2JO6 A;  3VMG A;  2DE6 D;  4QDC A;  1UUV A;  3C0D A;  4QDD A;  2E4P A;  3L72 E;  2BMQ A;  2YIU C;  4NB8 D;  2YFJ A;  4QUR A;  4AIV A;  1JM1 A;  1Z03 A;  4HM2 A;  3L74 E;  4NBC D;  1P84 E;  4HM5 A;  5KKZ C;  1NU1 E;  4NBG A;  4NB8 A;  1KB9 E;  2QJY C;  2NVG A;  1SQB E;  2HMK A;  3H1J E;  1NYK A;  2JZA A;  2E75 D;  2FYU E;  2XR8 A;  3GL0 A;  2BMO A;  4QUQ A;  4QCK A;  1VCK A;  1SQV E;  3L70 E;  4HKV A;  3VMG D;  1ZRT E;  1BE3 E;  1O7G A;  2HMM A;  3GTE A;  5KLV E;  4QUP A;  3VCP A;  1WW9 A;  3TGU E;  4NBH A;  5KLI C;  3VCA A;  2HMN A;  3GKQ A;  2DE5 A;  2FYN C;  4NBG D;  1O7P A;  4NBA A;  3VMI A;  2XRX A;  2NVF A;  1O7W A;  4P1B H;  2QPZ A;  2ZT9 D;  4QDF B;  2Q3W A;  4H0L D;  4HM0 A;  4PD4 E;  1PPJ E;  4NBE D;  2BMR A;  3FOU A;  1BCC E;  1O7M A;  4NB9 A; 
#chains in the Genus database with same CATH topology
 2QJK C;  1KYO E;  2HMO A;  4HM4 A;  3CX5 E;  3L71 E;  2XSO A;  4NBE A;  4PV1 D;  2NWF A;  4NBH D;  3GCF A;  2GBX A;  1ULJ A;  2DE5 D;  4HM3 A;  1VM9 A;  4HM1 A;  4U3F E;  3BCC E;  1Q90 C;  4NBA D;  4OGQ D;  1Z02 A;  3VMI D;  5BOK A;  1WQL A;  3L75 E;  1RIE A;  1O7N A;  2B1X A;  3GZX A;  1NDO A;  2D2C D;  5AEW A;  1FQT A;  1SQQ E;  2HML A;  2NVE A;  1EG9 A;  4NB9 D;  1PP9 E;  4H44 D;  3CXH E;  2YFI A;  1RFS A;  5AEU A;  1SJG A;  1ULI A;  1SQP E;  3VMH D;  3GTS A;  2YFL A;  1G8J B;  4HJL A;  2ZYL A;  2BCC E;  2IBZ E;  4HM6 A;  4NBB D;  3VMH A;  1NTK E;  4EMJ B;  3D89 A;  1UUW A;  4H13 D;  2HMJ A;  3H1K E;  4QDF A;  3L73 E;  4NBF D;  4AAY B;  5HL4 A;  4NBB A;  3EN1 A;  2NUK A;  1O7H A;  3GZY A;  1NTM E;  1NTZ E;  3H1L E;  5CXM A;  2DE6 A;  2GBW A;  2A06 E;  3EQQ A;  1L0N E;  2CKF A;  3GOB A;  3GKE A;  3DQY A;  1EZV E;  4NBD D;  4NBF A;  3GCE A;  4HM8 A;  2E4Q A;  2E74 D;  1VF5 D;  1SQX E;  4HM7 A;  4NBC A;  3AZC A;  2DE7 D;  3CWB E;  3GL2 A;  3N0Q A;  4P1C H;  2I7F A;  2B24 A;  2YVJ B;  3GB4 A;  1G8K B;  3H1I E;  2QJP C;  1Z01 A;  4NBD A;  1L0L E;  2E76 D;  2XSH A;  2NUM A;  3H1H E;  2DE7 A;  2JO6 A;  3VMG A;  2DE6 D;  4QDC A;  1UUV A;  3C0D A;  4QDD A;  2E4P A;  3L72 E;  2BMQ A;  2YIU C;  4NB8 D;  2YFJ A;  4QUR A;  4AIV A;  1JM1 A;  1Z03 A;  4HM2 A;  3L74 E;  4NBC D;  1P84 E;  4HM5 A;  5KKZ C;  1NU1 E;  4NBG A;  4NB8 A;  1KB9 E;  2QJY C;  2NVG A;  1SQB E;  2HMK A;  3H1J E;  1NYK A;  2JZA A;  2E75 D;  2FYU E;  2XR8 A;  3GL0 A;  2BMO A;  4QUQ A;  4QCK A;  1VCK A;  1SQV E;  3L70 E;  4HKV A;  3VMG D;  1ZRT E;  1BE3 E;  1O7G A;  2HMM A;  3GTE A;  5KLV E;  4QUP A;  3VCP A;  1WW9 A;  3TGU E;  4NBH A;  5KLI C;  3VCA A;  2HMN A;  3GKQ A;  2DE5 A;  2FYN C;  4NBG D;  1O7P A;  4NBA A;  3VMI A;  2XRX A;  2NVF A;  1O7W A;  4P1B H;  2QPZ A;  2ZT9 D;  4QDF B;  2Q3W A;  4H0L D;  4HM0 A;  4PD4 E;  1PPJ E;  4NBE D;  2BMR A;  3FOU A;  1BCC E;  1O7M A;  4NB9 A; 
#chains in the Genus database with same CATH homology
 2QJK C;  1KYO E;  2HMO A;  4HM4 A;  3CX5 E;  3L71 E;  2XSO A;  4NBE A;  4PV1 D;  2NWF A;  4NBH D;  3GCF A;  2GBX A;  1ULJ A;  2DE5 D;  4HM3 A;  1VM9 A;  4HM1 A;  4U3F E;  3BCC E;  1Q90 C;  4NBA D;  4OGQ D;  1Z02 A;  3VMI D;  5BOK A;  1WQL A;  3L75 E;  1RIE A;  1O7N A;  2B1X A;  3GZX A;  1NDO A;  2D2C D;  5AEW A;  1FQT A;  1SQQ E;  2HML A;  2NVE A;  1EG9 A;  4NB9 D;  1PP9 E;  4H44 D;  3CXH E;  2YFI A;  1RFS A;  5AEU A;  1SJG A;  1ULI A;  1SQP E;  3VMH D;  3GTS A;  2YFL A;  1G8J B;  4HJL A;  2ZYL A;  2BCC E;  2IBZ E;  4HM6 A;  4NBB D;  3VMH A;  1NTK E;  4EMJ B;  3D89 A;  1UUW A;  4H13 D;  2HMJ A;  3H1K E;  4QDF A;  3L73 E;  4NBF D;  4AAY B;  5HL4 A;  4NBB A;  3EN1 A;  2NUK A;  1O7H A;  3GZY A;  1NTM E;  1NTZ E;  3H1L E;  5CXM A;  2DE6 A;  2GBW A;  2A06 E;  3EQQ A;  1L0N E;  2CKF A;  3GOB A;  3GKE A;  3DQY A;  1EZV E;  4NBD D;  4NBF A;  3GCE A;  4HM8 A;  2E4Q A;  2E74 D;  1VF5 D;  1SQX E;  4HM7 A;  4NBC A;  3AZC A;  2DE7 D;  3CWB E;  3GL2 A;  3N0Q A;  4P1C H;  2I7F A;  2B24 A;  2YVJ B;  3GB4 A;  1G8K B;  3H1I E;  2QJP C;  1Z01 A;  4NBD A;  1L0L E;  2E76 D;  2XSH A;  2NUM A;  3H1H E;  2DE7 A;  2JO6 A;  3VMG A;  2DE6 D;  4QDC A;  1UUV A;  3C0D A;  4QDD A;  2E4P A;  3L72 E;  2BMQ A;  2YIU C;  4NB8 D;  2YFJ A;  4QUR A;  4AIV A;  1JM1 A;  1Z03 A;  4HM2 A;  3L74 E;  4NBC D;  1P84 E;  4HM5 A;  5KKZ C;  1NU1 E;  4NBG A;  4NB8 A;  1KB9 E;  2QJY C;  2NVG A;  1SQB E;  2HMK A;  3H1J E;  1NYK A;  2JZA A;  2E75 D;  2FYU E;  2XR8 A;  3GL0 A;  2BMO A;  4QUQ A;  4QCK A;  1VCK A;  1SQV E;  3L70 E;  4HKV A;  3VMG D;  1ZRT E;  1BE3 E;  1O7G A;  2HMM A;  3GTE A;  5KLV E;  4QUP A;  3VCP A;  1WW9 A;  3TGU E;  4NBH A;  5KLI C;  3VCA A;  2HMN A;  3GKQ A;  2DE5 A;  2FYN C;  4NBG D;  1O7P A;  4NBA A;  3VMI A;  2XRX A;  2NVF A;  1O7W A;  4P1B H;  2QPZ A;  2ZT9 D;  4QDF B;  2Q3W A;  4H0L D;  4HM0 A;  4PD4 E;  1PPJ E;  4NBE D;  2BMR A;  3FOU A;  1BCC E;  1O7M A;  4NB9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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