4HM0A

Naphthalene 1,2-dioxygenase bound to indole-3-acetate
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm0A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm0A01
1G8JB 3GZXA 4QUPA 3CXHE 4NBCA 4QDDA 3AZCA 1RIEA 2DE6D 4P1BH 4NBHD 3N0QA 2GBWA 1ULJA 3GKEA 2B1XA 1NYKA 5KLIC 2QPZA 3VMGA 2YFIA 2YVJB 2HMKA 1BE3E 4QUQA 2XR8A 1FQTA 4NBBA 2FYUE 4HM8A 5CXMA 1O7WA 1ULIA 2CKFA 3H1JE 4NBCD 4NBDA 4HKVA 1O7HA 2NVFA 3H1KE 1L0NE 5BOKA 4HM0A 2E74D 2YFLA 4H0LD 1O7NA 1P84E 4U3FE 2IBZE 2XSHA 4P1CH 3EN1A 3VMGD 4QDCA 3VCPA 4NBEA 4QDFB 2D2CD 4OGQD 4QURA 3GTSA 4NBBD 3VMHA 5KKZC 1SQXE 2Q3WA 2BMQA 5KLVE 2JZAA 2ZYLA 4NB8A 2NUMA 1PPJE 2E4PA 1Z02A 2XRXA 3GB4A 2HMJA 3DQYA 2NUKA 4NBED 2YFJA 4AIVA 4HM1A 1BCCE 2QJPC 2GBXA 3VMHD 1VCKA 1Z03A 2DE5A 4PV1D 1SJGA 2NWFA 2XSOA 1EG9A 2ZT9D 2E4QA 1L0LE 1SQBE 1WQLA 2DE5D 2HMOA 3GTEA 4NBDD 3H1IE 4NB9A 1O7GA 2BCCE 3GCFA 1NTZE 2NVGA 2YIUC 4HM3A 3GKQA 4HJLA 1WW9A 1SQQE 1Z01A 3H1HE 4QCKA 2B24A 4AAYB 1NDOA 1KB9E 2HMMA 3VCAA 2NVEA 1VM9A 4NBFA 2JO6A 3GL2A 4HM4A 3L71E 4NBHA 4NBAA 1NTME 1O7PA 3FOUA 4NBGA 4NB9D 3L75E 2HMNA 1SQPE 2A06E 3C0DA 4NB8D 3GCEA 1O7MA 1UUVA 4HM2A 3GOBA 3L74E 3L73E 1NU1E 3VMIA 4QDFA 2E75D 2FYNC 2I7FA 4NBFD 1NTKE 2HMLA 3L70E 2BMRA 4NBAD 4NBGD 3CX5E 4H13D 1EZVE 1Q90C 3L72E 3CWBE 3VMID 2DE7A 1JM1A 1RFSA 1G8KB 3GL0A 3D89A 1KYOE 2E76D 1PP9E 4HM5A 4HM6A 3H1LE 4HM7A 2DE6A 4H44D 5HL4A 1VF5D 3EQQA 2QJKC 4EMJB 5AEWA 5AEUA 1ZRTE 3TGUE 1UUWA 2BMOA 1SQVE 3BCCE 2QJYC 4PD4E 3GZYA 2DE7D
chains in the Genus database with same CATH superfamily
1G8JB 3GZXA 4QUPA 3CXHE 4NBCA 4QDDA 3AZCA 1RIEA 2DE6D 4P1BH 4NBHD 3N0QA 2GBWA 1ULJA 3GKEA 2B1XA 1NYKA 5KLIC 2QPZA 3VMGA 2YFIA 2YVJB 2HMKA 1BE3E 4QUQA 2XR8A 1FQTA 4NBBA 2FYUE 4HM8A 5CXMA 1O7WA 1ULIA 2CKFA 3H1JE 4NBCD 4NBDA 4HKVA 1O7HA 2NVFA 3H1KE 1L0NE 5BOKA 4HM0A 2E74D 2YFLA 4H0LD 1O7NA 1P84E 4U3FE 2IBZE 2XSHA 4P1CH 3EN1A 3VMGD 4QDCA 3VCPA 4NBEA 4QDFB 2D2CD 4OGQD 4QURA 3GTSA 4NBBD 3VMHA 5KKZC 1SQXE 2Q3WA 2BMQA 5KLVE 2JZAA 2ZYLA 4NB8A 2NUMA 1PPJE 2E4PA 1Z02A 2XRXA 3GB4A 2HMJA 3DQYA 2NUKA 4NBED 2YFJA 4AIVA 4HM1A 1BCCE 2QJPC 2GBXA 3VMHD 1VCKA 1Z03A 2DE5A 4PV1D 1SJGA 2NWFA 2XSOA 1EG9A 2ZT9D 2E4QA 1L0LE 1SQBE 1WQLA 2DE5D 2HMOA 3GTEA 4NBDD 3H1IE 4NB9A 1O7GA 2BCCE 3GCFA 1NTZE 2NVGA 2YIUC 4HM3A 3GKQA 4HJLA 1WW9A 1SQQE 1Z01A 3H1HE 4QCKA 2B24A 4AAYB 1NDOA 1KB9E 2HMMA 3VCAA 2NVEA 1VM9A 4NBFA 2JO6A 3GL2A 4HM4A 3L71E 4NBHA 4NBAA 1NTME 1O7PA 3FOUA 4NBGA 4NB9D 3L75E 2HMNA 1SQPE 2A06E 3C0DA 4NB8D 3GCEA 1O7MA 1UUVA 4HM2A 3GOBA 3L74E 3L73E 1NU1E 3VMIA 4QDFA 2E75D 2FYNC 2I7FA 4NBFD 1NTKE 2HMLA 3L70E 2BMRA 4NBAD 4NBGD 3CX5E 4H13D 1EZVE 1Q90C 3L72E 3CWBE 3VMID 2DE7A 1JM1A 1RFSA 1G8KB 3GL0A 3D89A 1KYOE 2E76D 1PP9E 4HM5A 4HM6A 3H1LE 4HM7A 2DE6A 4H44D 5HL4A 1VF5D 3EQQA 2QJKC 4EMJB 5AEWA 5AEUA 1ZRTE 3TGUE 1UUWA 2BMOA 1SQVE 3BCCE 2QJYC 4PD4E 3GZYA 2DE7D
chains in the Genus database with same CATH topology
1G8JB 3GZXA 4QUPA 3CXHE 4NBCA 4QDDA 3AZCA 1RIEA 2DE6D 4P1BH 4NBHD 3N0QA 2GBWA 1ULJA 3GKEA 2B1XA 1NYKA 5KLIC 2QPZA 3VMGA 2YFIA 2YVJB 2HMKA 1BE3E 4QUQA 2XR8A 1FQTA 4NBBA 2FYUE 4HM8A 5CXMA 1O7WA 1ULIA 2CKFA 3H1JE 4NBCD 4NBDA 4HKVA 1O7HA 2NVFA 3H1KE 1L0NE 5BOKA 4HM0A 2E74D 2YFLA 4H0LD 1O7NA 1P84E 4U3FE 2IBZE 2XSHA 4P1CH 3EN1A 3VMGD 4QDCA 3VCPA 4NBEA 4QDFB 2D2CD 4OGQD 4QURA 3GTSA 4NBBD 3VMHA 5KKZC 1SQXE 2Q3WA 2BMQA 5KLVE 2JZAA 2ZYLA 4NB8A 2NUMA 1PPJE 2E4PA 1Z02A 2XRXA 3GB4A 2HMJA 3DQYA 2NUKA 4NBED 2YFJA 4AIVA 4HM1A 1BCCE 2QJPC 2GBXA 3VMHD 1VCKA 1Z03A 2DE5A 4PV1D 1SJGA 2NWFA 2XSOA 1EG9A 2ZT9D 2E4QA 1L0LE 1SQBE 1WQLA 2DE5D 2HMOA 3GTEA 4NBDD 3H1IE 4NB9A 1O7GA 2BCCE 3GCFA 1NTZE 2NVGA 2YIUC 4HM3A 3GKQA 4HJLA 1WW9A 1SQQE 1Z01A 3H1HE 4QCKA 2B24A 4AAYB 1NDOA 1KB9E 2HMMA 3VCAA 2NVEA 1VM9A 4NBFA 2JO6A 3GL2A 4HM4A 3L71E 4NBHA 4NBAA 1NTME 1O7PA 3FOUA 4NBGA 4NB9D 3L75E 2HMNA 1SQPE 2A06E 3C0DA 4NB8D 3GCEA 1O7MA 1UUVA 4HM2A 3GOBA 3L74E 3L73E 1NU1E 3VMIA 4QDFA 2E75D 2FYNC 2I7FA 4NBFD 1NTKE 2HMLA 3L70E 2BMRA 4NBAD 4NBGD 3CX5E 4H13D 1EZVE 1Q90C 3L72E 3CWBE 3VMID 2DE7A 1JM1A 1RFSA 1G8KB 3GL0A 3D89A 1KYOE 2E76D 1PP9E 4HM5A 4HM6A 3H1LE 4HM7A 2DE6A 4H44D 5HL4A 1VF5D 3EQQA 2QJKC 4EMJB 5AEWA 5AEUA 1ZRTE 3TGUE 1UUWA 2BMOA 1SQVE 3BCCE 2QJYC 4PD4E 3GZYA 2DE7D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8J B;  3GZX A;  4QUP A;  3CXH E;  4NBC A;  4QDD A;  3AZC A;  1RIE A;  2DE6 D;  4P1B H;  4NBH D;  3N0Q A;  2GBW A;  1ULJ A;  3GKE A;  2B1X A;  1NYK A;  5KLI C;  2QPZ A;  3VMG A;  2YFI A;  2YVJ B;  2HMK A;  1BE3 E;  4QUQ A;  2XR8 A;  1FQT A;  4NBB A;  2FYU E;  4HM8 A;  5CXM A;  1O7W A;  1ULI A;  2CKF A;  3H1J E;  4NBC D;  4NBD A;  4HKV A;  1O7H A;  2NVF A;  3H1K E;  1L0N E;  5BOK A;  4HM0 A;  2E74 D;  2YFL A;  4H0L D;  1O7N A;  1P84 E;  4U3F E;  2IBZ E;  2XSH A;  4P1C H;  3EN1 A;  3VMG D;  4QDC A;  3VCP A;  4NBE A;  4QDF B;  2D2C D;  4OGQ D;  4QUR A;  3GTS A;  4NBB D;  3VMH A;  5KKZ C;  1SQX E;  2Q3W A;  2BMQ A;  5KLV E;  2JZA A;  2ZYL A;  4NB8 A;  2NUM A;  1PPJ E;  2E4P A;  1Z02 A;  2XRX A;  3GB4 A;  2HMJ A;  3DQY A;  2NUK A;  4NBE D;  2YFJ A;  4AIV A;  4HM1 A;  1BCC E;  2QJP C;  2GBX A;  3VMH D;  1VCK A;  1Z03 A;  2DE5 A;  4PV1 D;  1SJG A;  2NWF A;  2XSO A;  1EG9 A;  2ZT9 D;  2E4Q A;  1L0L E;  1SQB E;  1WQL A;  2DE5 D;  2HMO A;  3GTE A;  4NBD D;  3H1I E;  4NB9 A;  1O7G A;  2BCC E;  3GCF A;  1NTZ E;  2NVG A;  2YIU C;  4HM3 A;  3GKQ A;  4HJL A;  1WW9 A;  1SQQ E;  1Z01 A;  3H1H E;  4QCK A;  2B24 A;  4AAY B;  1NDO A;  1KB9 E;  2HMM A;  3VCA A;  2NVE A;  1VM9 A;  4NBF A;  2JO6 A;  3GL2 A;  4HM4 A;  3L71 E;  4NBH A;  4NBA A;  1NTM E;  1O7P A;  3FOU A;  4NBG A;  4NB9 D;  3L75 E;  2HMN A;  1SQP E;  2A06 E;  3C0D A;  4NB8 D;  3GCE A;  1O7M A;  1UUV A;  4HM2 A;  3GOB A;  3L74 E;  3L73 E;  1NU1 E;  3VMI A;  4QDF A;  2E75 D;  2FYN C;  2I7F A;  4NBF D;  1NTK E;  2HML A;  3L70 E;  2BMR A;  4NBA D;  4NBG D;  3CX5 E;  4H13 D;  1EZV E;  1Q90 C;  3L72 E;  3CWB E;  3VMI D;  2DE7 A;  1JM1 A;  1RFS A;  1G8K B;  3GL0 A;  3D89 A;  1KYO E;  2E76 D;  1PP9 E;  4HM5 A;  4HM6 A;  3H1L E;  4HM7 A;  2DE6 A;  4H44 D;  5HL4 A;  1VF5 D;  3EQQ A;  2QJK C;  4EMJ B;  5AEW A;  5AEU A;  1ZRT E;  3TGU E;  1UUW A;  2BMO A;  1SQV E;  3BCC E;  2QJY C;  4PD4 E;  3GZY A;  2DE7 D; 
#chains in the Genus database with same CATH topology
 1G8J B;  3GZX A;  4QUP A;  3CXH E;  4NBC A;  4QDD A;  3AZC A;  1RIE A;  2DE6 D;  4P1B H;  4NBH D;  3N0Q A;  2GBW A;  1ULJ A;  3GKE A;  2B1X A;  1NYK A;  5KLI C;  2QPZ A;  3VMG A;  2YFI A;  2YVJ B;  2HMK A;  1BE3 E;  4QUQ A;  2XR8 A;  1FQT A;  4NBB A;  2FYU E;  4HM8 A;  5CXM A;  1O7W A;  1ULI A;  2CKF A;  3H1J E;  4NBC D;  4NBD A;  4HKV A;  1O7H A;  2NVF A;  3H1K E;  1L0N E;  5BOK A;  4HM0 A;  2E74 D;  2YFL A;  4H0L D;  1O7N A;  1P84 E;  4U3F E;  2IBZ E;  2XSH A;  4P1C H;  3EN1 A;  3VMG D;  4QDC A;  3VCP A;  4NBE A;  4QDF B;  2D2C D;  4OGQ D;  4QUR A;  3GTS A;  4NBB D;  3VMH A;  5KKZ C;  1SQX E;  2Q3W A;  2BMQ A;  5KLV E;  2JZA A;  2ZYL A;  4NB8 A;  2NUM A;  1PPJ E;  2E4P A;  1Z02 A;  2XRX A;  3GB4 A;  2HMJ A;  3DQY A;  2NUK A;  4NBE D;  2YFJ A;  4AIV A;  4HM1 A;  1BCC E;  2QJP C;  2GBX A;  3VMH D;  1VCK A;  1Z03 A;  2DE5 A;  4PV1 D;  1SJG A;  2NWF A;  2XSO A;  1EG9 A;  2ZT9 D;  2E4Q A;  1L0L E;  1SQB E;  1WQL A;  2DE5 D;  2HMO A;  3GTE A;  4NBD D;  3H1I E;  4NB9 A;  1O7G A;  2BCC E;  3GCF A;  1NTZ E;  2NVG A;  2YIU C;  4HM3 A;  3GKQ A;  4HJL A;  1WW9 A;  1SQQ E;  1Z01 A;  3H1H E;  4QCK A;  2B24 A;  4AAY B;  1NDO A;  1KB9 E;  2HMM A;  3VCA A;  2NVE A;  1VM9 A;  4NBF A;  2JO6 A;  3GL2 A;  4HM4 A;  3L71 E;  4NBH A;  4NBA A;  1NTM E;  1O7P A;  3FOU A;  4NBG A;  4NB9 D;  3L75 E;  2HMN A;  1SQP E;  2A06 E;  3C0D A;  4NB8 D;  3GCE A;  1O7M A;  1UUV A;  4HM2 A;  3GOB A;  3L74 E;  3L73 E;  1NU1 E;  3VMI A;  4QDF A;  2E75 D;  2FYN C;  2I7F A;  4NBF D;  1NTK E;  2HML A;  3L70 E;  2BMR A;  4NBA D;  4NBG D;  3CX5 E;  4H13 D;  1EZV E;  1Q90 C;  3L72 E;  3CWB E;  3VMI D;  2DE7 A;  1JM1 A;  1RFS A;  1G8K B;  3GL0 A;  3D89 A;  1KYO E;  2E76 D;  1PP9 E;  4HM5 A;  4HM6 A;  3H1L E;  4HM7 A;  2DE6 A;  4H44 D;  5HL4 A;  1VF5 D;  3EQQ A;  2QJK C;  4EMJ B;  5AEW A;  5AEU A;  1ZRT E;  3TGU E;  1UUW A;  2BMO A;  1SQV E;  3BCC E;  2QJY C;  4PD4 E;  3GZY A;  2DE7 D; 
#chains in the Genus database with same CATH homology
 1G8J B;  3GZX A;  4QUP A;  3CXH E;  4NBC A;  4QDD A;  3AZC A;  1RIE A;  2DE6 D;  4P1B H;  4NBH D;  3N0Q A;  2GBW A;  1ULJ A;  3GKE A;  2B1X A;  1NYK A;  5KLI C;  2QPZ A;  3VMG A;  2YFI A;  2YVJ B;  2HMK A;  1BE3 E;  4QUQ A;  2XR8 A;  1FQT A;  4NBB A;  2FYU E;  4HM8 A;  5CXM A;  1O7W A;  1ULI A;  2CKF A;  3H1J E;  4NBC D;  4NBD A;  4HKV A;  1O7H A;  2NVF A;  3H1K E;  1L0N E;  5BOK A;  4HM0 A;  2E74 D;  2YFL A;  4H0L D;  1O7N A;  1P84 E;  4U3F E;  2IBZ E;  2XSH A;  4P1C H;  3EN1 A;  3VMG D;  4QDC A;  3VCP A;  4NBE A;  4QDF B;  2D2C D;  4OGQ D;  4QUR A;  3GTS A;  4NBB D;  3VMH A;  5KKZ C;  1SQX E;  2Q3W A;  2BMQ A;  5KLV E;  2JZA A;  2ZYL A;  4NB8 A;  2NUM A;  1PPJ E;  2E4P A;  1Z02 A;  2XRX A;  3GB4 A;  2HMJ A;  3DQY A;  2NUK A;  4NBE D;  2YFJ A;  4AIV A;  4HM1 A;  1BCC E;  2QJP C;  2GBX A;  3VMH D;  1VCK A;  1Z03 A;  2DE5 A;  4PV1 D;  1SJG A;  2NWF A;  2XSO A;  1EG9 A;  2ZT9 D;  2E4Q A;  1L0L E;  1SQB E;  1WQL A;  2DE5 D;  2HMO A;  3GTE A;  4NBD D;  3H1I E;  4NB9 A;  1O7G A;  2BCC E;  3GCF A;  1NTZ E;  2NVG A;  2YIU C;  4HM3 A;  3GKQ A;  4HJL A;  1WW9 A;  1SQQ E;  1Z01 A;  3H1H E;  4QCK A;  2B24 A;  4AAY B;  1NDO A;  1KB9 E;  2HMM A;  3VCA A;  2NVE A;  1VM9 A;  4NBF A;  2JO6 A;  3GL2 A;  4HM4 A;  3L71 E;  4NBH A;  4NBA A;  1NTM E;  1O7P A;  3FOU A;  4NBG A;  4NB9 D;  3L75 E;  2HMN A;  1SQP E;  2A06 E;  3C0D A;  4NB8 D;  3GCE A;  1O7M A;  1UUV A;  4HM2 A;  3GOB A;  3L74 E;  3L73 E;  1NU1 E;  3VMI A;  4QDF A;  2E75 D;  2FYN C;  2I7F A;  4NBF D;  1NTK E;  2HML A;  3L70 E;  2BMR A;  4NBA D;  4NBG D;  3CX5 E;  4H13 D;  1EZV E;  1Q90 C;  3L72 E;  3CWB E;  3VMI D;  2DE7 A;  1JM1 A;  1RFS A;  1G8K B;  3GL0 A;  3D89 A;  1KYO E;  2E76 D;  1PP9 E;  4HM5 A;  4HM6 A;  3H1L E;  4HM7 A;  2DE6 A;  4H44 D;  5HL4 A;  1VF5 D;  3EQQ A;  2QJK C;  4EMJ B;  5AEW A;  5AEU A;  1ZRT E;  3TGU E;  1UUW A;  2BMO A;  1SQV E;  3BCC E;  2QJY C;  4PD4 E;  3GZY A;  2DE7 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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